Wall clock time and date at job start Mon Mar 30 2020 03:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 120.00362 * 2 1 4 4 H 1.48499 * 109.47001 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46584 * 299.99673 * 3 2 1 6 6 H 1.48495 * 109.46974 * 59.99863 * 3 2 1 7 7 C 1.37881 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00104 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99844 * 0.27829 * 7 2 1 10 10 H 1.09001 * 109.73807 * 358.60685 * 9 7 2 11 11 C 1.50819 * 109.74596 * 119.33599 * 9 7 2 12 12 C 1.53814 * 111.62100 * 214.69185 * 11 9 7 13 13 C 1.54173 * 111.97485 * 319.04415 * 12 11 9 14 14 C 1.50761 * 112.60598 * 318.48325 * 13 12 11 15 15 C 1.54437 * 109.02145 * 93.01509 * 14 13 12 16 16 N 1.39776 * 111.77144 * 282.59502 * 15 14 13 17 17 C 1.46897 * 110.99778 * 189.13174 * 16 15 14 18 18 C 1.53004 * 109.47327 * 60.72989 * 17 16 15 19 19 C 1.53000 * 117.49708 * 243.75047 * 18 17 16 20 20 C 1.53001 * 117.49910 * 175.08791 * 18 17 16 21 21 H 0.96999 * 119.99562 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.05201 * 335.24795 * 11 9 7 23 23 H 1.09000 * 109.04556 * 94.14175 * 11 9 7 24 24 H 1.09001 * 108.98252 * 198.40007 * 12 11 9 25 25 H 1.09002 * 108.91774 * 79.63972 * 12 11 9 26 26 H 1.08999 * 108.85662 * 197.67719 * 13 12 11 27 27 H 1.09000 * 108.77811 * 79.22936 * 13 12 11 28 28 H 1.08999 * 109.54105 * 333.15591 * 14 13 12 29 29 H 1.09001 * 109.61849 * 212.92368 * 14 13 12 30 30 H 1.08993 * 109.01431 * 162.00599 * 15 14 13 31 31 H 1.08998 * 108.95598 * 43.14656 * 15 14 13 32 32 H 1.09000 * 109.47161 * 180.73187 * 17 16 15 33 33 H 1.09003 * 109.47103 * 300.72882 * 17 16 15 34 34 H 1.09002 * 115.54706 * 29.41605 * 18 17 16 35 35 H 1.08995 * 117.50155 * 359.97438 * 19 18 17 36 36 H 1.09003 * 117.49676 * 145.02310 * 19 18 17 37 37 H 1.09000 * 117.49563 * 214.98299 * 20 18 17 38 38 H 1.09000 * 117.49739 * 0.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 -0.0052 10 1 0.1785 -2.3051 0.0156 11 6 1.6036 -3.2857 -1.2428 12 6 0.4001 -4.0874 -1.7669 13 6 -0.4058 -4.7330 -0.6221 14 6 0.4778 -5.3212 0.4486 15 6 0.6985 -4.2664 1.5548 16 7 1.6355 -3.3023 1.1723 17 6 1.9938 -2.4381 2.3048 18 6 2.6115 -3.2864 3.4183 19 6 1.8617 -3.3585 4.7500 20 6 3.1590 -2.5527 4.6443 21 1 -0.4849 0.8401 -0.0004 22 1 1.9377 -2.5971 -2.0188 23 1 2.4147 -3.9747 -1.0072 24 1 0.7595 -4.8714 -2.4334 25 1 -0.2533 -3.4184 -2.3269 26 1 -1.0329 -5.5232 -1.0347 27 1 -1.0462 -3.9742 -0.1725 28 1 1.4378 -5.6018 0.0155 29 1 -0.0015 -6.2024 0.8753 30 1 1.0511 -4.7663 2.4569 31 1 -0.2502 -3.7744 1.7692 32 1 2.7144 -1.6890 1.9765 33 1 1.0991 -1.9415 2.6802 34 1 3.1403 -4.1810 3.0894 35 1 0.9286 -2.8012 4.8331 36 1 1.8976 -4.3003 5.2975 37 1 4.0478 -2.9649 5.1220 38 1 3.0788 -1.4658 4.6577 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259980742.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:57 Heat of formation + Delta-G solvation = 2.365392 kcal Electronic energy + Delta-G solvation = -16405.621162 eV Core-core repulsion = 14054.610578 eV Total energy + Delta-G solvation = -2351.010584 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.38788 -37.93733 -35.22963 -34.55951 -32.52327 -28.65808 -27.75681 -25.31119 -24.59780 -23.16331 -21.63264 -20.82771 -20.02129 -18.62975 -17.05049 -16.61275 -15.99089 -15.75321 -15.52383 -15.33006 -14.59101 -14.28544 -14.18159 -13.38737 -13.29661 -12.93899 -12.81178 -12.68168 -12.37577 -12.33414 -12.24883 -11.97246 -11.58475 -11.40862 -11.28119 -11.02056 -10.86704 -10.79239 -10.66181 -10.48473 -8.66112 -8.16410 -6.23725 1.35673 1.38569 1.50158 2.38750 2.96334 3.10886 3.49688 3.98500 4.09373 4.12992 4.16012 4.22334 4.35038 4.55193 4.56247 4.63801 4.77041 4.79649 4.91857 5.00314 5.05989 5.08433 5.12298 5.13806 5.24599 5.30148 5.33419 5.37274 5.49664 5.52529 5.58416 5.66173 5.78917 5.92047 6.23430 6.58420 7.02375 7.18596 7.43391 8.91453 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.017288 B = 0.013907 C = 0.008529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.265088 B = 2012.889935 C = 3282.220140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.016 3.984 3 Si 0.949 3.051 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.511 4.511 8 H 0.052 0.948 9 C 0.203 3.797 10 H 0.014 0.986 11 C -0.096 4.096 12 C -0.111 4.111 13 C -0.113 4.113 14 C -0.106 4.106 15 C 0.080 3.920 16 N -0.553 5.553 17 C 0.117 3.883 18 C -0.153 4.153 19 C -0.179 4.179 20 C -0.172 4.172 21 H 0.260 0.740 22 H 0.036 0.964 23 H 0.057 0.943 24 H 0.072 0.928 25 H 0.035 0.965 26 H 0.075 0.925 27 H 0.026 0.974 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.074 0.926 31 H -0.025 1.025 32 H 0.068 0.932 33 H -0.014 1.014 34 H 0.112 0.888 35 H 0.075 0.925 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.830 -8.609 4.443 10.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.182 4.182 3 Si 0.775 3.225 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.550 4.550 8 H 0.070 0.930 9 C 0.098 3.902 10 H 0.032 0.968 11 C -0.134 4.134 12 C -0.148 4.148 13 C -0.151 4.151 14 C -0.144 4.144 15 C -0.050 4.050 16 N -0.277 5.277 17 C -0.010 4.010 18 C -0.172 4.172 19 C -0.216 4.216 20 C -0.210 4.210 21 H 0.070 0.930 22 H 0.055 0.945 23 H 0.076 0.924 24 H 0.090 0.910 25 H 0.054 0.946 26 H 0.094 0.906 27 H 0.045 0.955 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.092 0.908 31 H -0.007 1.007 32 H 0.087 0.913 33 H 0.004 0.996 34 H 0.130 0.870 35 H 0.094 0.906 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.043 -8.745 4.286 10.203 hybrid contribution -0.751 1.858 0.083 2.006 sum 2.292 -6.887 4.369 8.472 Atomic orbital electron populations 1.70056 1.07437 1.27190 1.52144 1.25708 0.95496 1.02467 0.94577 0.85634 0.79452 0.79880 0.77568 1.18650 1.20587 1.20825 1.21329 0.92971 0.91335 1.49347 0.92969 1.19062 0.95138 0.89422 0.86583 0.96832 1.21410 0.97279 0.97348 0.97375 1.21879 0.96954 0.98475 0.97525 1.21339 0.98163 0.99045 0.96514 1.21429 1.00400 0.97182 0.95384 1.20940 0.91924 0.93779 0.98401 1.59227 1.44720 1.17157 1.06616 1.21222 0.96793 0.94035 0.88978 1.22369 1.04116 1.01819 0.88848 1.23066 0.95546 1.02611 1.00378 1.22998 0.97969 0.98719 1.01297 0.93043 0.94543 0.92436 0.90974 0.94566 0.90649 0.95523 0.90960 0.89747 0.90766 1.00712 0.91347 0.99612 0.87006 0.90640 0.86918 0.86677 0.89990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.20 12.61 21.45 0.27 -54.93 16 2 C 0.02 0.92 5.46 84.66 0.46 1.38 16 3 Si 0.95 44.05 29.54 68.60 2.03 46.08 16 4 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 7 C -0.51 -28.08 5.66 25.60 0.14 -27.94 16 8 H 0.05 2.88 7.60 -2.91 -0.02 2.86 16 9 C 0.20 10.29 2.17 43.32 0.09 10.39 16 10 H 0.01 0.80 5.45 -2.39 -0.01 0.79 16 11 C -0.10 -4.24 4.97 30.16 0.15 -4.09 16 12 C -0.11 -4.16 5.91 31.27 0.18 -3.98 16 13 C -0.11 -3.96 5.32 30.26 0.16 -3.80 16 14 C -0.11 -3.46 5.65 30.36 0.17 -3.29 16 15 C 0.08 3.10 4.82 88.07 0.42 3.52 16 16 N -0.55 -24.54 3.96 -892.27 -3.54 -28.07 16 17 C 0.12 5.18 4.70 86.31 0.41 5.59 16 18 C -0.15 -5.14 4.33 -10.79 -0.05 -5.18 16 19 C -0.18 -5.10 10.11 30.62 0.31 -4.79 16 20 C -0.17 -4.88 10.26 30.62 0.31 -4.56 16 21 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 22 H 0.04 1.70 7.71 -2.39 -0.02 1.68 16 23 H 0.06 2.42 7.26 -2.39 -0.02 2.40 16 24 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 25 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.03 1.09 6.57 -2.39 -0.02 1.08 16 28 H 0.07 2.34 7.11 -2.39 -0.02 2.32 16 29 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.07 2.56 6.50 -2.39 -0.02 2.55 16 31 H -0.03 -1.12 7.54 -2.39 -0.02 -1.14 16 32 H 0.07 3.34 6.06 -2.39 -0.01 3.32 16 33 H -0.01 -0.72 7.88 -2.39 -0.02 -0.74 16 34 H 0.11 3.58 8.10 -2.39 -0.02 3.56 16 35 H 0.07 2.35 8.03 -2.39 -0.02 2.34 16 36 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -60.93 287.89 2.54 -58.39 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 1.01 Total: 15.30 kcal Atomic # 6 Polarization: -39.53 SS G_CDS: 2.77 Total: -36.76 kcal Atomic # 7 Polarization: -79.73 SS G_CDS: -3.27 Total: -83.00 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -60.93 2.54 -58.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259980742.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.752 kcal (2) G-P(sol) polarization free energy of solvation -60.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds