Wall clock time and date at job start Mon Mar 30 2020 02:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37022 * 126.03447 * 2 1 4 4 N 1.37709 * 122.94941 * 355.35442 * 3 2 1 5 5 C 1.37095 * 120.00314 * 179.97438 * 4 3 2 6 6 H 1.08000 * 119.99374 * 0.02562 * 5 4 3 7 7 C 1.38831 * 120.00121 * 180.02562 * 5 4 3 8 8 N 1.31523 * 120.00438 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99922 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46960 * 89.99892 * 9 7 5 11 11 H 1.48495 * 109.46934 * 209.99819 * 9 7 5 12 12 H 1.48499 * 109.46955 * 330.00262 * 9 7 5 13 13 N 1.29802 * 114.10399 * 175.33847 * 3 2 1 14 14 C 1.46221 * 108.94687 * 358.47575 * 13 3 2 15 15 H 1.09002 * 105.34506 * 256.15045 * 14 13 3 16 16 C 1.49467 * 114.25230 * 140.19685 * 14 13 3 17 17 C 1.52531 * 113.23911 * 266.16424 * 16 14 13 18 18 C 1.53424 * 107.67848 * 305.14281 * 17 16 14 19 19 C 1.52242 * 108.08230 * 68.25495 * 18 17 16 20 20 C 1.48448 * 126.03933 * 179.68959 * 2 1 3 21 21 H 1.09003 * 109.92967 * 305.15970 * 20 2 1 22 22 H 1.09002 * 109.47391 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46813 * 240.02531 * 1 2 3 24 24 H 1.09004 * 109.47041 * 120.02658 * 1 2 3 25 25 H 0.97005 * 120.00251 * 0.02562 * 4 3 2 26 26 H 0.97001 * 120.00044 * 179.97438 * 8 7 5 27 27 H 1.08994 * 108.73105 * 27.13429 * 16 14 13 28 28 H 1.09004 * 108.72991 * 145.32083 * 16 14 13 29 29 H 1.08996 * 109.81588 * 64.69283 * 17 16 14 30 30 H 1.09004 * 109.81476 * 185.60068 * 17 16 14 31 31 H 1.08996 * 109.73816 * 187.90295 * 18 17 16 32 32 H 1.09001 * 109.74084 * 308.61480 * 18 17 16 33 33 H 1.09003 * 108.81821 * 62.15730 * 19 18 17 34 34 H 1.09007 * 108.81887 * 180.44399 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2710 1.1080 0.0000 4 7 1.7803 2.3913 -0.0936 5 6 2.6424 3.4572 -0.0874 6 1 3.7066 3.2903 -0.0095 7 6 2.1476 4.7509 -0.1812 8 7 0.8516 4.9541 -0.2755 9 14 3.3225 6.2032 -0.1734 10 1 3.7250 6.5217 -1.5669 11 1 2.6488 7.3816 0.4288 12 1 4.5275 5.8607 0.6239 13 7 3.5379 0.8420 0.0963 14 6 3.7115 -0.6051 0.2141 15 1 3.9337 -0.7843 1.2660 16 6 4.8745 -1.1482 -0.5517 17 6 4.4996 -1.6428 -1.9451 18 6 3.3679 -2.6667 -1.7872 19 6 2.1245 -1.9274 -1.3128 20 6 2.3384 -1.2004 0.0065 21 1 2.0798 -1.8434 0.8478 22 1 -0.3634 1.0277 -0.0005 23 1 -0.3633 -0.5135 0.8902 24 1 -0.3633 -0.5143 -0.8898 25 1 0.8244 2.5412 -0.1632 26 1 0.5058 5.8581 -0.3407 27 1 5.6261 -0.3649 -0.6489 28 1 5.3053 -1.9783 0.0082 29 1 4.1586 -0.8061 -2.5548 30 1 5.3626 -2.1152 -2.4141 31 1 3.1684 -3.1455 -2.7457 32 1 3.6521 -3.4189 -1.0512 33 1 1.8352 -1.2021 -2.0733 34 1 1.3141 -2.6458 -1.1889 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260159218.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:03 Heat of formation + Delta-G solvation = 40.732964 kcal Electronic energy + Delta-G solvation = -15809.946127 eV Core-core repulsion = 13357.058942 eV Total energy + Delta-G solvation = -2452.887185 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.98072 -36.27281 -34.15999 -32.67458 -31.20082 -29.82873 -27.86622 -25.52592 -24.39741 -22.10587 -21.84284 -19.00389 -18.68410 -17.13649 -16.15944 -15.42908 -14.87808 -14.43035 -14.08710 -13.87892 -13.32659 -13.12100 -12.53334 -12.27646 -12.17205 -11.70741 -11.57796 -11.45513 -11.26840 -10.90649 -10.75767 -10.33525 -10.27536 -10.10713 -9.99612 -9.91221 -9.07812 -8.32248 -7.70952 -6.67964 -6.20995 -3.54634 3.29603 3.36295 3.41442 3.67545 4.03280 4.38260 4.96036 5.06712 5.20995 5.28336 5.41784 5.48436 5.54661 5.59943 5.64436 5.78239 5.90996 5.95368 6.01304 6.06932 6.13048 6.27596 6.39690 6.50551 6.57977 6.66559 6.89532 7.11672 7.36939 7.64023 7.82273 8.55524 8.87530 9.29456 9.70837 10.09719 10.99108 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.036649 B = 0.008129 C = 0.007102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.817748 B = 3443.840211 C = 3941.544803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.116 3.884 2 N -0.671 5.671 3 C 0.570 3.430 4 N -0.570 5.570 5 C -0.264 4.264 6 H 0.106 0.894 7 C 0.007 3.993 8 N -0.920 5.920 9 Si 0.930 3.070 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.271 1.271 13 N -0.647 5.647 14 C 0.086 3.914 15 H 0.032 0.968 16 C -0.091 4.091 17 C -0.116 4.116 18 C -0.113 4.113 19 C -0.122 4.122 20 C 0.142 3.858 21 H 0.064 0.936 22 H 0.071 0.929 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.397 0.603 26 H 0.266 0.734 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.769 -12.583 -1.497 12.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.400 5.400 3 C 0.211 3.789 4 N -0.196 5.196 5 C -0.394 4.394 6 H 0.124 0.876 7 C -0.192 4.192 8 N -0.563 5.563 9 Si 0.758 3.242 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.196 1.196 13 N -0.399 5.399 14 C -0.027 4.027 15 H 0.050 0.950 16 C -0.129 4.129 17 C -0.154 4.154 18 C -0.151 4.151 19 C -0.160 4.160 20 C 0.036 3.964 21 H 0.082 0.918 22 H 0.090 0.910 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.232 0.768 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.507 -11.926 -1.439 12.107 hybrid contribution -0.875 0.270 0.046 0.916 sum 0.633 -11.657 -1.393 11.757 Atomic orbital electron populations 1.21193 0.79759 1.02182 0.99760 1.48385 1.04175 1.04349 1.83118 1.19963 0.86644 0.81774 0.90530 1.39902 1.08681 0.99312 1.71699 1.19683 0.91357 0.83149 1.45231 0.87598 1.25135 0.96445 0.98501 0.99112 1.69645 1.11412 1.22121 1.53108 0.85844 0.79758 0.80402 0.78191 1.20820 1.21319 1.19621 1.75051 1.10167 1.07303 1.47338 1.20416 0.91690 0.92413 0.98135 0.95011 1.20553 0.97871 0.99591 0.94899 1.21506 0.97593 0.98511 0.97784 1.21413 0.95579 0.97705 1.00361 1.21560 0.97641 0.99067 0.97774 1.21360 0.92294 0.86490 0.96252 0.91803 0.91025 0.93759 0.93732 0.76768 0.92402 0.91010 0.93114 0.91739 0.92443 0.92330 0.92114 0.91622 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.85 11.08 59.85 0.66 2.51 16 2 N -0.67 -13.09 2.95 -175.99 -0.52 -13.61 16 3 C 0.57 13.66 8.26 -321.08 -2.65 11.01 16 4 N -0.57 -14.92 5.38 -12.49 -0.07 -14.99 16 5 C -0.26 -7.44 9.75 -14.98 -0.15 -7.59 16 6 H 0.11 3.09 7.23 -52.49 -0.38 2.71 16 7 C 0.01 0.21 5.50 -17.46 -0.10 0.11 16 8 N -0.92 -26.07 13.05 55.49 0.72 -25.34 16 9 Si 0.93 21.86 29.55 -169.99 -5.02 16.84 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 13 N -0.65 -15.70 10.45 -58.31 -0.61 -16.31 16 14 C 0.09 1.67 3.23 -70.78 -0.23 1.44 16 15 H 0.03 0.63 8.06 -51.93 -0.42 0.21 16 16 C -0.09 -1.48 5.55 -28.72 -0.16 -1.64 16 17 C -0.12 -1.68 6.05 -26.75 -0.16 -1.84 16 18 C -0.11 -1.43 5.97 -26.90 -0.16 -1.59 16 19 C -0.12 -1.77 5.26 -27.55 -0.14 -1.92 16 20 C 0.14 2.43 3.73 -68.25 -0.25 2.18 16 21 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 22 H 0.07 1.21 6.53 -51.93 -0.34 0.87 16 23 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.04 0.63 8.13 -51.93 -0.42 0.20 16 25 H 0.40 10.24 6.37 -40.82 -0.26 9.98 16 26 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 27 H 0.07 1.28 8.08 -51.93 -0.42 0.86 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 1.08 8.11 -51.93 -0.42 0.66 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.07 1.09 7.93 -51.93 -0.41 0.68 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 272.80 15.07 4.11 4.11 Total: -1.00 -29.96 272.80 -9.89 -39.85 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -5.16 Total: 6.77 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -3.34 Total: 2.68 kcal Atomic # 7 Polarization: -69.78 SS G_CDS: -0.47 Total: -70.25 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.96 -9.89 -39.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260159218.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.580 kcal (2) G-P(sol) polarization free energy of solvation -29.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds