Wall clock time and date at job start Mon Mar 30 2020 02:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37022 * 126.03447 * 2 1 4 4 N 1.37709 * 122.94941 * 355.35442 * 3 2 1 5 5 C 1.37095 * 120.00314 * 179.97438 * 4 3 2 6 6 H 1.08000 * 119.99374 * 0.02562 * 5 4 3 7 7 C 1.38831 * 120.00121 * 180.02562 * 5 4 3 8 8 N 1.31523 * 120.00438 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99922 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46960 * 89.99892 * 9 7 5 11 11 H 1.48495 * 109.46934 * 209.99819 * 9 7 5 12 12 H 1.48499 * 109.46955 * 330.00262 * 9 7 5 13 13 N 1.29802 * 114.10399 * 175.33847 * 3 2 1 14 14 C 1.46221 * 108.94687 * 358.47575 * 13 3 2 15 15 H 1.09002 * 105.34506 * 256.15045 * 14 13 3 16 16 C 1.49467 * 114.25230 * 140.19685 * 14 13 3 17 17 C 1.52531 * 113.23911 * 266.16424 * 16 14 13 18 18 C 1.53424 * 107.67848 * 305.14281 * 17 16 14 19 19 C 1.52242 * 108.08230 * 68.25495 * 18 17 16 20 20 C 1.48448 * 126.03933 * 179.68959 * 2 1 3 21 21 H 1.09003 * 109.92967 * 305.15970 * 20 2 1 22 22 H 1.09002 * 109.47391 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46813 * 240.02531 * 1 2 3 24 24 H 1.09004 * 109.47041 * 120.02658 * 1 2 3 25 25 H 0.97005 * 120.00251 * 0.02562 * 4 3 2 26 26 H 0.97001 * 120.00044 * 179.97438 * 8 7 5 27 27 H 1.08994 * 108.73105 * 27.13429 * 16 14 13 28 28 H 1.09004 * 108.72991 * 145.32083 * 16 14 13 29 29 H 1.08996 * 109.81588 * 64.69283 * 17 16 14 30 30 H 1.09004 * 109.81476 * 185.60068 * 17 16 14 31 31 H 1.08996 * 109.73816 * 187.90295 * 18 17 16 32 32 H 1.09001 * 109.74084 * 308.61480 * 18 17 16 33 33 H 1.09003 * 108.81821 * 62.15730 * 19 18 17 34 34 H 1.09007 * 108.81887 * 180.44399 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2710 1.1080 0.0000 4 7 1.7803 2.3913 -0.0936 5 6 2.6424 3.4572 -0.0874 6 1 3.7066 3.2903 -0.0095 7 6 2.1476 4.7509 -0.1812 8 7 0.8516 4.9541 -0.2755 9 14 3.3225 6.2032 -0.1734 10 1 3.7250 6.5217 -1.5669 11 1 2.6488 7.3816 0.4288 12 1 4.5275 5.8607 0.6239 13 7 3.5379 0.8420 0.0963 14 6 3.7115 -0.6051 0.2141 15 1 3.9337 -0.7843 1.2660 16 6 4.8745 -1.1482 -0.5517 17 6 4.4996 -1.6428 -1.9451 18 6 3.3679 -2.6667 -1.7872 19 6 2.1245 -1.9274 -1.3128 20 6 2.3384 -1.2004 0.0065 21 1 2.0798 -1.8434 0.8478 22 1 -0.3634 1.0277 -0.0005 23 1 -0.3633 -0.5135 0.8902 24 1 -0.3633 -0.5143 -0.8898 25 1 0.8244 2.5412 -0.1632 26 1 0.5058 5.8581 -0.3407 27 1 5.6261 -0.3649 -0.6489 28 1 5.3053 -1.9783 0.0082 29 1 4.1586 -0.8061 -2.5548 30 1 5.3626 -2.1152 -2.4141 31 1 3.1684 -3.1455 -2.7457 32 1 3.6521 -3.4189 -1.0512 33 1 1.8352 -1.2021 -2.0733 34 1 1.3141 -2.6458 -1.1889 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260159218.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:02 Heat of formation + Delta-G solvation = 23.150887 kcal Electronic energy + Delta-G solvation = -15810.708543 eV Core-core repulsion = 13357.058942 eV Total energy + Delta-G solvation = -2453.649601 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.50964 -37.83415 -35.87565 -34.19407 -33.13986 -31.11690 -29.43083 -27.03420 -26.32483 -23.40176 -23.18956 -20.66453 -20.30583 -18.95623 -17.79553 -16.85521 -16.39250 -16.24377 -15.50742 -15.31931 -15.00408 -14.51530 -13.89616 -13.66486 -13.56654 -13.27672 -13.22953 -12.99491 -12.78428 -12.62654 -12.26928 -12.11737 -11.94013 -11.54136 -11.32998 -11.16498 -10.98910 -10.01889 -9.56089 -8.38381 -8.30394 -5.68631 1.43435 1.43773 1.56984 2.11225 2.22259 2.48931 3.30209 3.47752 3.70465 3.89069 4.01711 4.20427 4.27155 4.36162 4.39364 4.55776 4.65699 4.72781 4.78496 4.85568 5.03408 5.09056 5.13977 5.28732 5.32961 5.37731 5.46936 5.60325 5.66646 5.82638 5.93057 6.70299 6.90100 7.30364 7.74325 8.17950 8.90163 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.036649 B = 0.008129 C = 0.007102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.817748 B = 3443.840211 C = 3941.544803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.671 5.671 3 C 0.563 3.437 4 N -0.589 5.589 5 C -0.281 4.281 6 H 0.088 0.912 7 C -0.037 4.037 8 N -0.946 5.946 9 Si 0.993 3.007 10 H -0.276 1.276 11 H -0.279 1.279 12 H -0.271 1.271 13 N -0.689 5.689 14 C 0.079 3.921 15 H 0.022 0.978 16 C -0.089 4.089 17 C -0.113 4.113 18 C -0.105 4.105 19 C -0.115 4.115 20 C 0.140 3.860 21 H 0.086 0.914 22 H 0.054 0.946 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.394 0.606 26 H 0.268 0.732 27 H 0.046 0.954 28 H 0.081 0.919 29 H 0.031 0.969 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.039 0.961 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.850 -14.675 -1.750 14.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.401 5.401 3 C 0.203 3.797 4 N -0.217 5.217 5 C -0.412 4.412 6 H 0.106 0.894 7 C -0.233 4.233 8 N -0.590 5.590 9 Si 0.818 3.182 10 H -0.202 1.202 11 H -0.204 1.204 12 H -0.196 1.196 13 N -0.440 5.440 14 C -0.033 4.033 15 H 0.040 0.960 16 C -0.128 4.128 17 C -0.151 4.151 18 C -0.143 4.143 19 C -0.154 4.154 20 C 0.035 3.965 21 H 0.104 0.896 22 H 0.073 0.927 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.229 0.771 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.100 0.900 29 H 0.050 0.950 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.058 0.942 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.590 -14.077 -1.693 14.267 hybrid contribution -0.871 0.790 0.161 1.186 sum 0.719 -13.288 -1.531 13.395 Atomic orbital electron populations 1.21389 0.77704 1.01917 1.02088 1.48596 1.05523 1.03672 1.82311 1.20114 0.87552 0.82153 0.89930 1.39835 1.08249 0.99991 1.73640 1.19662 0.90947 0.84452 1.46147 0.89443 1.25918 0.98074 1.00554 0.98755 1.69740 1.12656 1.22669 1.53912 0.84897 0.77727 0.77272 0.78275 1.20221 1.20388 1.19622 1.74954 1.11162 1.11185 1.46650 1.20672 0.94194 0.90212 0.98268 0.96005 1.20548 0.96012 0.99785 0.96420 1.21485 0.99488 0.98173 0.95942 1.21420 0.93495 0.97221 1.02181 1.21509 0.99745 0.98892 0.95248 1.21588 0.90187 0.85938 0.98758 0.89587 0.92668 0.91229 0.91338 0.77070 0.92249 0.93508 0.90002 0.95030 0.89825 0.90100 0.89792 0.94201 0.90061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.43 11.08 127.77 1.42 4.85 16 2 N -0.67 -25.76 2.95 -710.71 -2.10 -27.86 16 3 C 0.56 27.58 8.26 260.88 2.16 29.74 16 4 N -0.59 -31.98 5.38 -193.43 -1.04 -33.02 16 5 C -0.28 -16.45 9.75 84.01 0.82 -15.63 16 6 H 0.09 5.33 7.23 -2.91 -0.02 5.30 16 7 C -0.04 -2.06 5.50 84.88 0.47 -1.60 16 8 N -0.95 -54.56 13.05 21.65 0.28 -54.28 16 9 Si 0.99 45.55 29.55 68.60 2.03 47.58 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 13 N -0.69 -34.28 10.45 -338.38 -3.54 -37.81 16 14 C 0.08 3.01 3.23 43.29 0.14 3.15 16 15 H 0.02 0.86 8.06 -2.39 -0.02 0.84 16 16 C -0.09 -2.80 5.55 29.31 0.16 -2.64 16 17 C -0.11 -3.03 6.05 30.58 0.19 -2.85 16 18 C -0.11 -2.26 5.97 30.49 0.18 -2.07 16 19 C -0.12 -3.01 5.26 30.06 0.16 -2.85 16 20 C 0.14 4.51 3.73 43.71 0.16 4.68 16 21 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 22 H 0.05 1.87 6.53 -2.39 -0.02 1.86 16 23 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.07 1.77 8.13 -2.38 -0.02 1.75 16 25 H 0.39 21.15 6.37 -92.70 -0.59 20.56 16 26 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 27 H 0.05 1.68 8.08 -2.39 -0.02 1.66 16 28 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 29 H 0.03 1.04 8.11 -2.39 -0.02 1.02 16 30 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.08 1.48 8.10 -2.39 -0.02 1.46 16 33 H 0.04 1.25 7.93 -2.39 -0.02 1.23 16 34 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 Total: -1.00 -66.78 272.80 1.97 -64.81 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: 0.49 Total: 25.82 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: 5.85 Total: 14.77 kcal Atomic # 7 Polarization: -146.58 SS G_CDS: -6.40 Total: -152.98 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -66.78 1.97 -64.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260159218.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.957 kcal (2) G-P(sol) polarization free energy of solvation -66.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds