Wall clock time and date at job start Mon Mar 30 2020 02:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.39285 * 127.95586 * 2 1 4 4 N 1.37712 * 123.70923 * 335.55837 * 3 2 1 5 5 C 1.37085 * 120.00428 * 179.97438 * 4 3 2 6 6 H 1.08002 * 120.00017 * 359.97438 * 5 4 3 7 7 C 1.38833 * 120.00148 * 179.97438 * 5 4 3 8 8 N 1.31524 * 120.00192 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00358 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46670 * 89.99925 * 9 7 5 11 11 H 1.48494 * 109.47548 * 209.99889 * 9 7 5 12 12 H 1.48498 * 109.46891 * 330.00383 * 9 7 5 13 13 N 1.31534 * 112.59272 * 155.55299 * 3 2 1 14 14 C 1.44540 * 107.88763 * 0.17747 * 13 3 2 15 15 H 1.09001 * 109.16394 * 267.19529 * 14 13 3 16 16 C 1.51039 * 120.86049 * 140.22262 * 14 13 3 17 17 C 1.54208 * 106.32348 * 178.57398 * 16 14 13 18 18 C 1.52495 * 111.74156 * 57.23591 * 17 16 14 19 19 C 1.53948 * 112.07527 * 306.60585 * 18 17 16 20 20 C 1.45579 * 127.95652 * 180.02562 * 2 1 3 21 21 H 1.09000 * 109.98265 * 98.99454 * 20 2 1 22 22 H 1.09000 * 109.47092 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47008 * 120.01803 * 1 2 3 24 24 H 1.08998 * 109.47142 * 240.02320 * 1 2 3 25 25 H 0.96998 * 119.99560 * 359.97212 * 4 3 2 26 26 H 0.96996 * 120.00609 * 180.02562 * 8 7 5 27 27 H 1.09001 * 110.07748 * 59.36870 * 16 14 13 28 28 H 1.09002 * 110.16936 * 297.82454 * 16 14 13 29 29 H 1.08996 * 109.02601 * 296.65074 * 17 16 14 30 30 H 1.08999 * 109.02533 * 177.81562 * 17 16 14 31 31 H 1.08997 * 108.95836 * 185.93749 * 18 17 16 32 32 H 1.08999 * 108.96066 * 67.27534 * 18 17 16 33 33 H 1.08999 * 109.98374 * 297.43613 * 19 18 17 34 34 H 1.09003 * 109.97784 * 176.08818 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3217 1.0982 0.0000 4 7 1.9695 2.3423 -0.4740 5 6 2.8743 3.3715 -0.4369 6 1 3.8633 3.2068 -0.0355 7 6 2.5193 4.6255 -0.9152 8 7 1.3150 4.8260 -1.4045 9 14 3.7519 6.0282 -0.8640 10 1 4.5369 6.0435 -2.1245 11 1 3.0295 7.3170 -0.7151 12 1 4.6694 5.8389 0.2882 13 7 3.5042 0.8167 0.5026 14 6 3.5029 -0.5766 0.8870 15 1 3.2137 -0.6584 1.9348 16 6 4.7153 -1.4463 0.6521 17 6 4.3650 -2.8390 1.2138 18 6 3.1099 -3.4111 0.5635 19 6 1.9192 -2.4392 0.6500 20 6 2.3604 -1.1479 -0.0005 21 1 2.7158 -1.3426 -1.0124 22 1 -0.3633 1.0277 -0.0005 23 1 -0.3633 -0.5141 -0.8898 24 1 -0.3633 -0.5135 0.8902 25 1 1.0811 2.4903 -0.8342 26 1 1.0670 5.7021 -1.7391 27 1 5.5774 -1.0365 1.1783 28 1 4.9270 -1.5156 -0.4149 29 1 4.2031 -2.7582 2.2886 30 1 5.1997 -3.5159 1.0314 31 1 2.8444 -4.3420 1.0646 32 1 3.3192 -3.6224 -0.4851 33 1 1.6588 -2.2610 1.6934 34 1 1.0627 -2.8511 0.1163 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260159236.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:05 Heat of formation + Delta-G solvation = 43.381598 kcal Electronic energy + Delta-G solvation = -15672.941283 eV Core-core repulsion = 13220.168952 eV Total energy + Delta-G solvation = -2452.772331 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.00291 -36.38076 -34.24727 -32.38753 -31.17836 -29.79297 -27.59842 -25.73627 -24.46728 -21.49259 -21.25800 -19.69692 -18.70039 -17.55042 -15.94151 -15.12847 -15.02787 -14.47418 -14.20065 -13.75352 -13.37383 -13.25149 -12.69373 -12.28485 -11.86447 -11.78864 -11.69387 -11.33321 -11.15691 -11.05888 -10.66992 -10.46020 -10.39458 -10.29291 -10.08663 -9.99265 -8.97228 -8.07381 -7.68780 -6.66925 -6.26743 -3.59611 3.26239 3.34278 3.39656 3.69651 3.87180 4.35168 4.84090 4.95524 5.05110 5.26814 5.35774 5.50747 5.57748 5.60212 5.69906 5.75498 5.78854 5.83556 5.92371 6.05425 6.10871 6.18943 6.36297 6.41809 6.46245 6.57991 6.90803 7.21805 7.49389 7.66654 7.77850 8.56165 8.82622 9.23157 9.65591 10.03272 10.92676 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.043045 B = 0.007415 C = 0.006456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.329931 B = 3775.018294 C = 4336.057608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.674 5.674 3 C 0.565 3.435 4 N -0.556 5.556 5 C -0.268 4.268 6 H 0.108 0.892 7 C 0.010 3.990 8 N -0.915 5.915 9 Si 0.932 3.068 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.270 1.270 13 N -0.648 5.648 14 C 0.084 3.916 15 H 0.039 0.961 16 C -0.098 4.098 17 C -0.117 4.117 18 C -0.111 4.111 19 C -0.108 4.108 20 C 0.111 3.889 21 H 0.057 0.943 22 H 0.069 0.931 23 H 0.041 0.959 24 H 0.043 0.957 25 H 0.399 0.601 26 H 0.268 0.732 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.262 -12.871 2.667 13.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.406 5.406 3 C 0.207 3.793 4 N -0.180 5.180 5 C -0.399 4.399 6 H 0.126 0.874 7 C -0.190 4.190 8 N -0.558 5.558 9 Si 0.760 3.240 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.195 1.195 13 N -0.399 5.399 14 C -0.030 4.030 15 H 0.057 0.943 16 C -0.137 4.137 17 C -0.155 4.155 18 C -0.149 4.149 19 C -0.147 4.147 20 C 0.005 3.995 21 H 0.074 0.926 22 H 0.087 0.913 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.234 0.766 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.466 -12.236 2.822 12.566 hybrid contribution -0.789 0.225 -0.332 0.885 sum -0.323 -12.011 2.490 12.271 Atomic orbital electron populations 1.21101 0.79267 1.01919 0.99479 1.47617 1.03358 1.04545 1.85060 1.20946 0.86078 0.82081 0.90165 1.39940 1.15758 1.04332 1.57956 1.19730 0.95825 0.87121 1.37231 0.87414 1.25184 0.97161 0.98579 0.98056 1.69649 1.18851 1.24163 1.43120 0.85814 0.79730 0.79834 0.78655 1.20690 1.21241 1.19507 1.74887 1.17198 1.10293 1.37542 1.21648 0.92994 0.91691 0.96686 0.94340 1.21256 0.98268 0.93366 1.00790 1.21620 0.96908 0.96807 1.00148 1.21465 0.94662 0.97743 1.01056 1.21406 0.97675 0.94765 1.00826 1.21772 0.91871 0.87138 0.98722 0.92566 0.91264 0.94093 0.93889 0.76631 0.92238 0.91601 0.92140 0.92342 0.92235 0.92140 0.92216 0.91631 0.92314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.03 11.12 59.85 0.67 2.70 16 2 N -0.67 -13.42 3.44 -174.86 -0.60 -14.03 16 3 C 0.57 13.71 8.09 -315.68 -2.55 11.15 16 4 N -0.56 -14.59 5.38 -11.57 -0.06 -14.65 16 5 C -0.27 -7.55 9.77 -14.98 -0.15 -7.69 16 6 H 0.11 3.13 7.27 -52.49 -0.38 2.75 16 7 C 0.01 0.28 5.50 -17.46 -0.10 0.19 16 8 N -0.92 -25.72 13.05 55.49 0.72 -25.00 16 9 Si 0.93 21.64 29.55 -169.99 -5.02 16.62 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 N -0.65 -16.02 10.84 -55.29 -0.60 -16.62 16 14 C 0.08 1.65 3.15 -68.61 -0.22 1.44 16 15 H 0.04 0.79 7.66 -51.93 -0.40 0.39 16 16 C -0.10 -1.59 6.08 -27.09 -0.16 -1.76 16 17 C -0.12 -1.46 5.79 -26.36 -0.15 -1.61 16 18 C -0.11 -1.30 5.81 -26.50 -0.15 -1.46 16 19 C -0.11 -1.48 5.70 -27.16 -0.15 -1.64 16 20 C 0.11 1.99 2.98 -67.99 -0.20 1.79 16 21 H 0.06 1.06 7.94 -51.93 -0.41 0.65 16 22 H 0.07 1.15 7.46 -51.93 -0.39 0.77 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.40 10.31 7.29 -40.82 -0.30 10.02 16 26 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.06 0.99 7.98 -51.93 -0.41 0.58 16 29 H 0.06 0.72 8.11 -51.93 -0.42 0.30 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.91 7.90 -51.93 -0.41 0.50 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 274.47 15.07 4.14 4.14 Total: -1.00 -29.92 274.47 -9.82 -39.74 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -5.22 Total: 6.68 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -3.18 Total: 3.12 kcal Atomic # 7 Polarization: -69.76 SS G_CDS: -0.54 Total: -70.29 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.92 -9.82 -39.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260159236.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.121 kcal (2) G-P(sol) polarization free energy of solvation -29.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds