Wall clock time and date at job start Mon Mar 30 2020 02:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.39285 * 127.95586 * 2 1 4 4 N 1.37712 * 123.70923 * 335.55837 * 3 2 1 5 5 C 1.37085 * 120.00428 * 179.97438 * 4 3 2 6 6 H 1.08002 * 120.00017 * 359.97438 * 5 4 3 7 7 C 1.38833 * 120.00148 * 179.97438 * 5 4 3 8 8 N 1.31524 * 120.00192 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00358 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46670 * 89.99925 * 9 7 5 11 11 H 1.48494 * 109.47548 * 209.99889 * 9 7 5 12 12 H 1.48498 * 109.46891 * 330.00383 * 9 7 5 13 13 N 1.31534 * 112.59272 * 155.55299 * 3 2 1 14 14 C 1.44540 * 107.88763 * 0.17747 * 13 3 2 15 15 H 1.09001 * 109.16394 * 267.19529 * 14 13 3 16 16 C 1.51039 * 120.86049 * 140.22262 * 14 13 3 17 17 C 1.54208 * 106.32348 * 178.57398 * 16 14 13 18 18 C 1.52495 * 111.74156 * 57.23591 * 17 16 14 19 19 C 1.53948 * 112.07527 * 306.60585 * 18 17 16 20 20 C 1.45579 * 127.95652 * 180.02562 * 2 1 3 21 21 H 1.09000 * 109.98265 * 98.99454 * 20 2 1 22 22 H 1.09000 * 109.47092 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47008 * 120.01803 * 1 2 3 24 24 H 1.08998 * 109.47142 * 240.02320 * 1 2 3 25 25 H 0.96998 * 119.99560 * 359.97212 * 4 3 2 26 26 H 0.96996 * 120.00609 * 180.02562 * 8 7 5 27 27 H 1.09001 * 110.07748 * 59.36870 * 16 14 13 28 28 H 1.09002 * 110.16936 * 297.82454 * 16 14 13 29 29 H 1.08996 * 109.02601 * 296.65074 * 17 16 14 30 30 H 1.08999 * 109.02533 * 177.81562 * 17 16 14 31 31 H 1.08997 * 108.95836 * 185.93749 * 18 17 16 32 32 H 1.08999 * 108.96066 * 67.27534 * 18 17 16 33 33 H 1.08999 * 109.98374 * 297.43613 * 19 18 17 34 34 H 1.09003 * 109.97784 * 176.08818 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3217 1.0982 0.0000 4 7 1.9695 2.3423 -0.4740 5 6 2.8743 3.3715 -0.4369 6 1 3.8633 3.2068 -0.0355 7 6 2.5193 4.6255 -0.9152 8 7 1.3150 4.8260 -1.4045 9 14 3.7519 6.0282 -0.8640 10 1 4.5369 6.0435 -2.1245 11 1 3.0295 7.3170 -0.7151 12 1 4.6694 5.8389 0.2882 13 7 3.5042 0.8167 0.5026 14 6 3.5029 -0.5766 0.8870 15 1 3.2137 -0.6584 1.9348 16 6 4.7153 -1.4463 0.6521 17 6 4.3650 -2.8390 1.2138 18 6 3.1099 -3.4111 0.5635 19 6 1.9192 -2.4392 0.6500 20 6 2.3604 -1.1479 -0.0005 21 1 2.7158 -1.3426 -1.0124 22 1 -0.3633 1.0277 -0.0005 23 1 -0.3633 -0.5141 -0.8898 24 1 -0.3633 -0.5135 0.8902 25 1 1.0811 2.4903 -0.8342 26 1 1.0670 5.7021 -1.7391 27 1 5.5774 -1.0365 1.1783 28 1 4.9270 -1.5156 -0.4149 29 1 4.2031 -2.7582 2.2886 30 1 5.1997 -3.5159 1.0314 31 1 2.8444 -4.3420 1.0646 32 1 3.3192 -3.6224 -0.4851 33 1 1.6588 -2.2610 1.6934 34 1 1.0627 -2.8511 0.1163 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260159236.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:04 Heat of formation + Delta-G solvation = 25.337118 kcal Electronic energy + Delta-G solvation = -15673.723750 eV Core-core repulsion = 13220.168952 eV Total energy + Delta-G solvation = -2453.554799 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.53752 -37.92151 -35.97363 -33.93689 -33.12295 -31.03425 -29.07524 -27.25738 -26.38282 -22.89831 -22.57586 -20.97166 -20.43443 -19.52167 -17.67248 -16.73857 -16.47205 -16.12292 -15.55133 -15.18591 -15.13283 -14.51725 -13.94334 -13.67742 -13.48164 -13.42948 -13.08372 -12.90453 -12.75410 -12.52613 -12.28953 -12.12174 -12.03459 -11.61883 -11.44836 -11.30275 -10.88445 -9.77614 -9.51400 -8.43299 -8.34258 -5.72815 1.42240 1.44216 1.57529 2.02823 2.09947 2.47940 3.25759 3.35793 3.68764 3.87716 3.98122 4.21213 4.30847 4.39731 4.44840 4.53040 4.57079 4.65698 4.77173 4.83959 4.95640 5.15406 5.19935 5.22256 5.30403 5.33373 5.42751 5.53752 5.71442 5.78374 6.01037 6.72834 6.86905 7.23680 7.68646 8.09267 8.85418 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.043045 B = 0.007415 C = 0.006456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.329931 B = 3775.018294 C = 4336.057608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.675 5.675 3 C 0.557 3.443 4 N -0.574 5.574 5 C -0.289 4.289 6 H 0.090 0.910 7 C -0.032 4.032 8 N -0.941 5.941 9 Si 0.996 3.004 10 H -0.275 1.275 11 H -0.277 1.277 12 H -0.271 1.271 13 N -0.690 5.690 14 C 0.071 3.929 15 H 0.031 0.969 16 C -0.096 4.096 17 C -0.110 4.110 18 C -0.108 4.108 19 C -0.100 4.100 20 C 0.116 3.884 21 H 0.045 0.955 22 H 0.056 0.944 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.396 0.604 26 H 0.271 0.729 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.349 -14.803 2.958 15.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.407 5.407 3 C 0.198 3.802 4 N -0.199 5.199 5 C -0.420 4.420 6 H 0.108 0.892 7 C -0.229 4.229 8 N -0.584 5.584 9 Si 0.820 3.180 10 H -0.200 1.200 11 H -0.202 1.202 12 H -0.195 1.195 13 N -0.440 5.440 14 C -0.042 4.042 15 H 0.049 0.951 16 C -0.135 4.135 17 C -0.148 4.148 18 C -0.146 4.146 19 C -0.138 4.138 20 C 0.010 3.990 21 H 0.062 0.938 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.231 0.769 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.374 -14.225 3.127 14.569 hybrid contribution -0.752 0.728 -0.383 1.115 sum -0.378 -13.497 2.744 13.778 Atomic orbital electron populations 1.21328 0.77005 1.01945 1.01774 1.47836 1.04710 1.03767 1.84356 1.21150 0.87028 0.82477 0.89523 1.39867 1.15460 1.04982 1.59639 1.19710 0.95694 0.88391 1.38183 0.89249 1.25975 0.98974 1.00425 0.97523 1.69739 1.20153 1.24782 1.43774 0.84862 0.77540 0.76952 0.78602 1.20047 1.20249 1.19548 1.74786 1.18270 1.13909 1.37052 1.21857 0.95891 0.89969 0.96476 0.95150 1.21278 0.96490 0.95121 1.00566 1.21589 0.98488 0.94527 1.00147 1.21489 0.93116 0.98171 1.01818 1.21422 0.99376 0.92603 1.00431 1.21887 0.90824 0.88262 0.98013 0.93758 0.92472 0.91776 0.91341 0.76943 0.92010 0.92451 0.92823 0.91943 0.89713 0.88970 0.91651 0.91669 0.90287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 3.76 11.12 127.77 1.42 5.18 16 2 N -0.68 -26.60 3.44 -707.15 -2.43 -29.03 16 3 C 0.56 27.69 8.09 258.99 2.10 29.79 16 4 N -0.57 -31.17 5.38 -190.53 -1.02 -32.19 16 5 C -0.29 -16.81 9.77 84.01 0.82 -15.98 16 6 H 0.09 5.41 7.27 -2.91 -0.02 5.39 16 7 C -0.03 -1.77 5.50 84.88 0.47 -1.30 16 8 N -0.94 -53.69 13.05 21.65 0.28 -53.41 16 9 Si 1.00 44.95 29.55 68.60 2.03 46.98 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 13 N -0.69 -35.04 10.84 -328.84 -3.57 -38.60 16 14 C 0.07 2.82 3.15 45.59 0.14 2.96 16 15 H 0.03 1.25 7.66 -2.39 -0.02 1.23 16 16 C -0.10 -3.03 6.08 30.36 0.18 -2.85 16 17 C -0.11 -2.40 5.79 30.84 0.18 -2.23 16 18 C -0.11 -2.09 5.81 30.75 0.18 -1.92 16 19 C -0.10 -2.42 5.70 30.32 0.17 -2.24 16 20 C 0.12 4.00 2.98 45.45 0.14 4.14 16 21 H 0.04 1.64 7.94 -2.39 -0.02 1.62 16 22 H 0.06 1.89 7.46 -2.39 -0.02 1.88 16 23 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.40 21.25 7.29 -92.71 -0.68 20.57 16 26 H 0.27 14.58 8.31 -92.71 -0.77 13.80 16 27 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.05 1.74 7.98 -2.39 -0.02 1.72 16 29 H 0.06 1.34 8.11 -2.39 -0.02 1.32 16 30 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.06 1.61 7.90 -2.39 -0.02 1.59 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -66.28 274.47 1.49 -64.79 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: 0.40 Total: 25.92 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: 5.80 Total: 15.54 kcal Atomic # 7 Polarization: -146.50 SS G_CDS: -6.74 Total: -153.23 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -66.28 1.49 -64.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260159236.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.126 kcal (2) G-P(sol) polarization free energy of solvation -66.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds