Wall clock time and date at job start Mon Mar 30 2020 02:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47160 * 2 1 4 4 C 1.50700 * 109.47231 * 120.00334 * 2 1 3 5 5 C 1.35353 * 126.91124 * 300.30243 * 4 2 1 6 6 C 1.50694 * 126.75152 * 359.97438 * 5 4 2 7 7 H 1.08999 * 109.47077 * 359.71593 * 6 5 4 8 8 C 1.52995 * 109.47414 * 239.71067 * 6 5 4 9 9 C 1.50704 * 109.47176 * 119.70948 * 6 5 4 10 10 H 1.08005 * 119.99811 * 5.44829 * 9 6 5 11 11 C 1.37875 * 120.00286 * 185.44826 * 9 6 5 12 12 N 1.31513 * 119.99945 * 8.61085 * 11 9 6 13 13 Si 1.86802 * 120.00107 * 188.61101 * 11 9 6 14 14 H 1.48497 * 109.47330 * 94.98541 * 13 11 9 15 15 H 1.48503 * 109.47049 * 214.98977 * 13 11 9 16 16 H 1.48502 * 109.46931 * 334.98817 * 13 11 9 17 17 N 1.33768 * 106.49464 * 179.73730 * 5 4 2 18 18 N 1.28636 * 108.88750 * 0.26238 * 17 5 4 19 19 N 1.28712 * 110.17984 * 0.02562 * 18 17 5 20 20 C 1.46494 * 125.87053 * 180.02562 * 19 18 17 21 21 H 1.08998 * 109.47061 * 305.89942 * 1 2 3 22 22 H 1.09005 * 109.47339 * 65.90009 * 1 2 3 23 23 H 1.08999 * 109.47132 * 185.89619 * 1 2 3 24 24 H 1.09005 * 109.47490 * 240.00288 * 2 1 3 25 25 H 1.08999 * 109.47314 * 179.97438 * 3 2 1 26 26 H 1.08999 * 109.47444 * 300.00208 * 3 2 1 27 27 H 1.09008 * 109.47013 * 60.00484 * 3 2 1 28 28 H 1.09000 * 109.46781 * 63.57352 * 8 6 5 29 29 H 1.09007 * 109.47047 * 183.56812 * 8 6 5 30 30 H 1.08997 * 109.47376 * 303.56923 * 8 6 5 31 31 H 0.97005 * 120.00141 * 180.02562 * 12 11 9 32 32 H 1.09003 * 109.47783 * 95.33507 * 20 19 18 33 33 H 1.09003 * 109.47317 * 215.33470 * 20 19 18 34 34 H 1.09001 * 109.47095 * 335.33096 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.7885 -0.3756 2.5190 6 6 0.9597 0.7842 3.0079 7 1 0.5730 1.3400 2.1537 8 6 1.8285 1.7063 3.8655 9 6 -0.1906 0.2671 3.8330 10 1 -0.2606 -0.7861 4.0616 11 6 -1.1534 1.1386 4.2960 12 7 -1.1651 2.3865 3.8811 13 14 -2.4414 0.5468 5.5127 14 1 -1.9980 0.8606 6.8948 15 1 -3.7313 1.2299 5.2394 16 1 -2.6188 -0.9208 5.3710 17 7 2.4235 -1.2797 3.2731 18 7 3.0256 -2.1155 2.5026 19 7 2.8210 -1.8093 1.2693 20 6 3.3455 -2.5310 0.1073 21 1 -0.3633 0.6026 0.8324 22 1 -0.3634 0.4196 -0.9381 23 1 -0.3633 -1.0222 0.1056 24 1 1.8934 -0.5138 -0.8900 25 1 3.1299 1.4425 0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6766 1.9563 0.8901 28 1 2.6237 2.1302 3.2522 29 1 1.2145 2.5106 4.2709 30 1 2.2662 1.1353 4.6842 31 1 -1.8423 2.9998 4.2072 32 1 2.5978 -3.2402 -0.2478 33 1 3.5788 -1.8212 -0.6864 34 1 4.2501 -3.0686 0.3914 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260173385.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:25 Heat of formation + Delta-G solvation = 78.697954 kcal Electronic energy + Delta-G solvation = -16000.538301 eV Core-core repulsion = 13549.297402 eV Total energy + Delta-G solvation = -2451.240899 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.51685 -35.82614 -34.78292 -33.09377 -30.72142 -28.49247 -27.29145 -26.72572 -24.99525 -23.08443 -21.80863 -19.80693 -19.33902 -16.71382 -16.04118 -15.65394 -14.79349 -14.14783 -14.06868 -13.16010 -13.07401 -12.75792 -12.66182 -12.53737 -11.71744 -11.66626 -11.56194 -10.91696 -10.83313 -10.82248 -10.69873 -10.63241 -10.46327 -10.21204 -9.69392 -9.52890 -9.20906 -8.89436 -8.26017 -7.94436 -5.97857 -3.96915 2.28427 2.94548 3.36800 3.43369 3.46945 3.57704 4.52257 4.74041 4.90656 5.08078 5.17812 5.34016 5.36048 5.52500 5.65409 5.81227 6.03239 6.10565 6.18431 6.33541 6.34989 6.51705 6.68367 6.83655 6.89763 7.02910 7.21436 7.28255 7.38889 7.73281 7.96067 8.04118 8.45730 9.04602 9.39042 9.65053 11.11053 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.030686 B = 0.009732 C = 0.008852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.241680 B = 2876.311012 C = 3162.387000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.006 4.006 3 C -0.150 4.150 4 C -0.044 4.044 5 C 0.045 3.955 6 C 0.112 3.888 7 H 0.061 0.939 8 C -0.127 4.127 9 C -0.497 4.497 10 H 0.056 0.944 11 C 0.064 3.936 12 N -0.892 5.892 13 Si 0.889 3.111 14 H -0.281 1.281 15 H -0.288 1.288 16 H -0.275 1.275 17 N -0.263 5.263 18 N -0.117 5.117 19 N -0.306 5.306 20 C 0.087 3.913 21 H 0.091 0.909 22 H 0.053 0.947 23 H 0.049 0.951 24 H 0.065 0.935 25 H 0.047 0.953 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.009 0.991 29 H 0.070 0.930 30 H 0.035 0.965 31 H 0.260 0.740 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.680 -3.692 -10.961 12.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 C -0.208 4.208 4 C -0.174 4.174 5 C -0.093 4.093 6 C 0.092 3.908 7 H 0.078 0.922 8 C -0.186 4.186 9 C -0.536 4.536 10 H 0.074 0.926 11 C -0.137 4.137 12 N -0.531 5.531 13 Si 0.717 3.283 14 H -0.207 1.207 15 H -0.214 1.214 16 H -0.200 1.200 17 N -0.129 5.129 18 N -0.095 5.095 19 N -0.101 5.101 20 C -0.055 4.055 21 H 0.109 0.891 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.083 0.917 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.099 0.901 28 H 0.028 0.972 29 H 0.089 0.911 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.306 -4.562 -9.967 12.646 hybrid contribution -1.087 0.137 -0.176 1.109 sum 5.220 -4.425 -10.142 12.235 Atomic orbital electron populations 1.21960 0.92969 1.02697 1.03143 1.19434 0.96776 0.95235 0.91228 1.21970 1.00306 0.95000 1.03480 1.21939 1.02937 0.93603 0.98922 1.22696 0.99270 0.99406 0.87946 1.17486 0.90463 0.86604 0.96225 0.92159 1.21709 0.97466 1.00331 0.99045 1.21022 1.06337 0.94338 1.31888 0.92568 1.24880 0.97356 0.95026 0.96456 1.69938 1.35359 1.04457 1.43319 0.86626 0.80804 0.78892 0.82010 1.20678 1.21406 1.19984 1.74995 1.09731 1.02611 1.25596 1.78192 1.22377 1.22544 0.86373 1.46948 1.34918 1.20767 1.07433 1.22005 1.00852 0.97323 0.85323 0.89053 0.92772 0.93148 0.91700 0.93371 0.92283 0.90073 0.97156 0.91104 0.94546 0.93022 0.90046 0.89284 0.88708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 8.95 37.15 0.33 -2.12 16 2 C -0.01 -0.09 3.02 -91.78 -0.28 -0.37 16 3 C -0.15 -2.24 9.01 37.16 0.33 -1.90 16 4 C -0.04 -0.84 5.70 -82.08 -0.47 -1.31 16 5 C 0.04 1.04 5.51 -82.78 -0.46 0.59 16 6 C 0.11 2.81 1.55 -92.93 -0.14 2.67 16 7 H 0.06 1.51 3.84 -51.93 -0.20 1.31 16 8 C -0.13 -3.14 9.05 37.15 0.34 -2.80 16 9 C -0.50 -13.88 8.47 -34.44 -0.29 -14.17 16 10 H 0.06 1.65 7.76 -52.48 -0.41 1.24 16 11 C 0.06 1.76 5.19 -17.82 -0.09 1.67 16 12 N -0.89 -24.88 12.11 55.43 0.67 -24.21 16 13 Si 0.89 21.73 29.55 -169.99 -5.02 16.71 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 17 N -0.26 -6.46 12.41 33.29 0.41 -6.05 16 18 N -0.12 -2.52 13.16 60.35 0.79 -1.72 16 19 N -0.31 -5.42 3.74 -63.79 -0.24 -5.66 16 20 C 0.09 0.95 10.96 59.84 0.66 1.61 16 21 H 0.09 1.83 5.74 -51.93 -0.30 1.53 16 22 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.06 0.80 6.99 -51.93 -0.36 0.44 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 1.45 5.65 -51.92 -0.29 1.15 16 28 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.07 1.85 6.79 -51.92 -0.35 1.49 16 30 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.09 0.75 7.39 -51.93 -0.38 0.36 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 277.30 15.07 4.18 4.18 Total: -1.00 -31.68 277.30 -4.09 -35.76 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -4.81 Total: -2.87 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -0.07 Total: -16.15 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 1.64 Total: -37.64 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.68 -4.09 -35.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260173385.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.463 kcal (2) G-P(sol) polarization free energy of solvation -31.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds