Wall clock time and date at job start Mon Mar 30 2020 02:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47160 * 2 1 4 4 C 1.50700 * 109.47231 * 120.00334 * 2 1 3 5 5 C 1.35353 * 126.91124 * 300.30243 * 4 2 1 6 6 C 1.50694 * 126.75152 * 359.97438 * 5 4 2 7 7 H 1.08999 * 109.47077 * 359.71593 * 6 5 4 8 8 C 1.52995 * 109.47414 * 239.71067 * 6 5 4 9 9 C 1.50704 * 109.47176 * 119.70948 * 6 5 4 10 10 H 1.08005 * 119.99811 * 5.44829 * 9 6 5 11 11 C 1.37875 * 120.00286 * 185.44826 * 9 6 5 12 12 N 1.31513 * 119.99945 * 8.61085 * 11 9 6 13 13 Si 1.86802 * 120.00107 * 188.61101 * 11 9 6 14 14 H 1.48497 * 109.47330 * 94.98541 * 13 11 9 15 15 H 1.48503 * 109.47049 * 214.98977 * 13 11 9 16 16 H 1.48502 * 109.46931 * 334.98817 * 13 11 9 17 17 N 1.33768 * 106.49464 * 179.73730 * 5 4 2 18 18 N 1.28636 * 108.88750 * 0.26238 * 17 5 4 19 19 N 1.28712 * 110.17984 * 0.02562 * 18 17 5 20 20 C 1.46494 * 125.87053 * 180.02562 * 19 18 17 21 21 H 1.08998 * 109.47061 * 305.89942 * 1 2 3 22 22 H 1.09005 * 109.47339 * 65.90009 * 1 2 3 23 23 H 1.08999 * 109.47132 * 185.89619 * 1 2 3 24 24 H 1.09005 * 109.47490 * 240.00288 * 2 1 3 25 25 H 1.08999 * 109.47314 * 179.97438 * 3 2 1 26 26 H 1.08999 * 109.47444 * 300.00208 * 3 2 1 27 27 H 1.09008 * 109.47013 * 60.00484 * 3 2 1 28 28 H 1.09000 * 109.46781 * 63.57352 * 8 6 5 29 29 H 1.09007 * 109.47047 * 183.56812 * 8 6 5 30 30 H 1.08997 * 109.47376 * 303.56923 * 8 6 5 31 31 H 0.97005 * 120.00141 * 180.02562 * 12 11 9 32 32 H 1.09003 * 109.47783 * 95.33507 * 20 19 18 33 33 H 1.09003 * 109.47317 * 215.33470 * 20 19 18 34 34 H 1.09001 * 109.47095 * 335.33096 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.7885 -0.3756 2.5190 6 6 0.9597 0.7842 3.0079 7 1 0.5730 1.3400 2.1537 8 6 1.8285 1.7063 3.8655 9 6 -0.1906 0.2671 3.8330 10 1 -0.2606 -0.7861 4.0616 11 6 -1.1534 1.1386 4.2960 12 7 -1.1651 2.3865 3.8811 13 14 -2.4414 0.5468 5.5127 14 1 -1.9980 0.8606 6.8948 15 1 -3.7313 1.2299 5.2394 16 1 -2.6188 -0.9208 5.3710 17 7 2.4235 -1.2797 3.2731 18 7 3.0256 -2.1155 2.5026 19 7 2.8210 -1.8093 1.2693 20 6 3.3455 -2.5310 0.1073 21 1 -0.3633 0.6026 0.8324 22 1 -0.3634 0.4196 -0.9381 23 1 -0.3633 -1.0222 0.1056 24 1 1.8934 -0.5138 -0.8900 25 1 3.1299 1.4425 0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6766 1.9563 0.8901 28 1 2.6237 2.1302 3.2522 29 1 1.2145 2.5106 4.2709 30 1 2.2662 1.1353 4.6842 31 1 -1.8423 2.9998 4.2072 32 1 2.5978 -3.2402 -0.2478 33 1 3.5788 -1.8212 -0.6864 34 1 4.2501 -3.0686 0.3914 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260173385.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:25 Heat of formation + Delta-G solvation = 57.689253 kcal Electronic energy + Delta-G solvation = -16001.449307 eV Core-core repulsion = 13549.297402 eV Total energy + Delta-G solvation = -2452.151905 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.06063 -37.32821 -36.34729 -34.80084 -32.59225 -30.10082 -28.49690 -27.97080 -27.09463 -24.78540 -23.27682 -21.41755 -20.84683 -18.44913 -17.54803 -17.30049 -16.64531 -15.71717 -15.43972 -14.74383 -14.45220 -14.12846 -13.92757 -13.78577 -13.51601 -13.21494 -13.00477 -12.80650 -12.76670 -12.38259 -12.29233 -12.07837 -12.04976 -11.99214 -11.48390 -11.37258 -10.90115 -10.63140 -10.34363 -9.59035 -8.09798 -6.14627 0.79378 1.39446 1.42396 1.51355 1.72494 1.84397 2.47748 3.20651 3.53891 3.81258 3.99007 4.18616 4.27948 4.36305 4.49074 4.54373 4.65844 4.84208 4.89673 4.92080 5.04758 5.08583 5.12998 5.16359 5.21906 5.45756 5.46594 5.62342 5.68547 5.93079 5.94849 6.02415 6.40720 6.88538 7.48989 7.78323 8.97974 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.030686 B = 0.009732 C = 0.008852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.241680 B = 2876.311012 C = 3162.387000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.004 4.004 3 C -0.147 4.147 4 C -0.027 4.027 5 C 0.007 3.993 6 C 0.118 3.882 7 H 0.060 0.940 8 C -0.116 4.116 9 C -0.514 4.514 10 H 0.030 0.970 11 C 0.027 3.973 12 N -0.908 5.908 13 Si 0.940 3.060 14 H -0.279 1.279 15 H -0.275 1.275 16 H -0.280 1.280 17 N -0.314 5.314 18 N -0.134 5.134 19 N -0.290 5.290 20 C 0.069 3.931 21 H 0.046 0.954 22 H 0.088 0.912 23 H 0.043 0.957 24 H 0.114 0.886 25 H 0.058 0.942 26 H 0.089 0.911 27 H 0.043 0.957 28 H 0.029 0.971 29 H 0.050 0.950 30 H 0.020 0.980 31 H 0.264 0.736 32 H 0.104 0.896 33 H 0.125 0.875 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.087 -4.203 -13.550 15.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.024 4.024 3 C -0.205 4.205 4 C -0.160 4.160 5 C -0.132 4.132 6 C 0.098 3.902 7 H 0.078 0.922 8 C -0.175 4.175 9 C -0.553 4.553 10 H 0.048 0.952 11 C -0.173 4.173 12 N -0.547 5.547 13 Si 0.767 3.233 14 H -0.205 1.205 15 H -0.200 1.200 16 H -0.205 1.205 17 N -0.179 5.179 18 N -0.111 5.111 19 N -0.085 5.085 20 C -0.070 4.070 21 H 0.065 0.935 22 H 0.107 0.893 23 H 0.062 0.938 24 H 0.132 0.868 25 H 0.077 0.923 26 H 0.108 0.892 27 H 0.062 0.938 28 H 0.048 0.952 29 H 0.069 0.931 30 H 0.039 0.961 31 H 0.073 0.927 32 H 0.123 0.877 33 H 0.143 0.857 34 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.735 -5.096 -12.567 15.141 hybrid contribution -1.169 0.245 0.519 1.302 sum 5.566 -4.852 -12.047 14.130 Atomic orbital electron populations 1.21890 0.93789 1.01624 1.03056 1.19663 0.95948 0.95666 0.91138 1.21935 1.00968 0.94428 1.03138 1.22378 1.01443 0.93307 0.98839 1.22518 1.00958 0.99794 0.89965 1.17273 0.89906 0.87425 0.95628 0.92245 1.21559 0.97582 0.99498 0.98811 1.21139 1.07959 0.93195 1.32991 0.95183 1.25454 0.98935 0.95256 0.97629 1.69999 1.35953 1.04967 1.43795 0.85820 0.79264 0.78139 0.80080 1.20498 1.20002 1.20512 1.74901 1.11441 1.03932 1.27614 1.78045 1.22812 1.22382 0.87873 1.47435 1.33173 1.19994 1.07917 1.22668 1.02148 0.98499 0.83709 0.93497 0.89329 0.93787 0.86816 0.92290 0.89241 0.93763 0.95234 0.93084 0.96108 0.92715 0.87712 0.85718 0.87019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.48 8.95 71.98 0.64 -3.84 16 2 C 0.00 -0.10 3.02 -11.54 -0.03 -0.14 16 3 C -0.15 -3.98 9.01 71.98 0.65 -3.33 16 4 C -0.03 -1.01 5.70 41.36 0.24 -0.77 16 5 C 0.01 0.32 5.51 41.60 0.23 0.55 16 6 C 0.12 6.08 1.55 -12.29 -0.02 6.06 16 7 H 0.06 3.07 3.84 -2.39 -0.01 3.07 16 8 C -0.12 -5.94 9.05 71.98 0.65 -5.29 16 9 C -0.51 -29.78 8.47 25.60 0.22 -29.56 16 10 H 0.03 1.85 7.76 -2.91 -0.02 1.82 16 11 C 0.03 1.50 5.19 84.65 0.44 1.94 16 12 N -0.91 -51.52 12.11 21.45 0.26 -51.26 16 13 Si 0.94 45.32 29.55 68.60 2.03 47.34 16 14 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 15 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 16 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 17 N -0.31 -15.77 12.41 -48.61 -0.60 -16.37 16 18 N -0.13 -5.68 13.16 37.02 0.49 -5.19 16 19 N -0.29 -9.62 3.74 -355.73 -1.33 -10.95 16 20 C 0.07 1.19 10.96 127.77 1.40 2.59 16 21 H 0.05 1.88 5.74 -2.39 -0.01 1.87 16 22 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 23 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.11 2.10 6.99 -2.38 -0.02 2.08 16 25 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.04 1.54 5.65 -2.38 -0.01 1.52 16 28 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.05 2.75 6.79 -2.38 -0.02 2.73 16 30 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.26 14.18 8.31 -92.70 -0.77 13.41 16 32 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.12 1.33 7.39 -2.39 -0.02 1.31 16 34 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -72.07 277.30 6.34 -65.73 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: 1.09 Total: 2.47 kcal Atomic # 6 Polarization: -36.20 SS G_CDS: 4.41 Total: -31.78 kcal Atomic # 7 Polarization: -82.58 SS G_CDS: -1.19 Total: -83.77 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -72.07 6.34 -65.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260173385.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.422 kcal (2) G-P(sol) polarization free energy of solvation -72.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds