Wall clock time and date at job start Mon Mar 30 2020 02:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47010 * 2 1 4 4 C 1.50699 * 109.47319 * 120.00088 * 2 1 3 5 5 C 1.35347 * 126.91066 * 300.07350 * 4 2 1 6 6 C 1.50697 * 126.75247 * 359.96488 * 5 4 2 7 7 H 1.08997 * 109.47378 * 359.97438 * 6 5 4 8 8 C 1.53001 * 109.47389 * 120.00279 * 6 5 4 9 9 C 1.50702 * 109.46809 * 239.99803 * 6 5 4 10 10 H 1.07999 * 120.00355 * 0.02562 * 9 6 5 11 11 C 1.37878 * 119.99801 * 179.97438 * 9 6 5 12 12 N 1.31511 * 120.00114 * 180.02562 * 11 9 6 13 13 Si 1.86798 * 120.00090 * 0.02562 * 11 9 6 14 14 H 1.48495 * 109.47439 * 89.99731 * 13 11 9 15 15 H 1.48502 * 109.46992 * 209.99944 * 13 11 9 16 16 H 1.48502 * 109.47033 * 329.99289 * 13 11 9 17 17 N 1.33777 * 106.49588 * 180.22030 * 5 4 2 18 18 N 1.28634 * 108.88364 * 359.56610 * 17 5 4 19 19 N 1.28721 * 110.17783 * 0.44573 * 18 17 5 20 20 C 1.46497 * 125.86666 * 179.74050 * 19 18 17 21 21 H 1.09005 * 109.46865 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47072 * 300.00087 * 1 2 3 23 23 H 1.09002 * 109.47160 * 60.00185 * 1 2 3 24 24 H 1.08999 * 109.46635 * 240.00220 * 2 1 3 25 25 H 1.08996 * 109.47076 * 181.30062 * 3 2 1 26 26 H 1.09002 * 109.47399 * 301.30132 * 3 2 1 27 27 H 1.09000 * 109.47230 * 61.30143 * 3 2 1 28 28 H 1.09001 * 109.47557 * 59.99674 * 8 6 5 29 29 H 1.08996 * 109.47465 * 180.02562 * 8 6 5 30 30 H 1.09004 * 109.46797 * 299.99891 * 8 6 5 31 31 H 0.97000 * 120.00731 * 180.02562 * 12 11 9 32 32 H 1.09002 * 109.47604 * 264.39308 * 20 19 18 33 33 H 1.09002 * 109.47348 * 24.39631 * 20 19 18 34 34 H 1.09007 * 109.47061 * 144.39435 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.7921 -0.3730 2.5189 6 6 0.9682 0.7903 3.0078 7 1 0.5780 1.3436 2.1536 8 6 -0.1956 0.2710 3.8544 9 6 1.8306 1.7004 3.8439 10 1 2.8713 1.4607 4.0048 11 6 1.2912 2.8397 4.4026 12 7 2.0438 3.6342 5.1318 13 14 -0.5086 3.2547 4.1237 14 1 -1.3306 2.6391 5.1963 15 1 -0.6862 4.7289 4.1484 16 1 -0.9398 2.7263 2.8046 17 7 2.4345 -1.2719 3.2732 18 7 3.0254 -2.1156 2.5027 19 7 2.8137 -1.8145 1.2693 20 6 3.3296 -2.5423 0.1073 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 3.1297 1.4426 -0.0233 26 1 1.6577 1.9631 -0.8781 27 1 1.6959 1.9496 0.9014 28 1 0.1948 -0.2822 4.7087 29 1 -0.7918 1.1123 4.2076 30 1 -0.8194 -0.3874 3.2497 31 1 1.6644 4.4356 5.5252 32 1 4.2466 -2.0672 -0.2413 33 1 3.5393 -3.5743 0.3887 34 1 2.5867 -2.5270 -0.6903 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260173388.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:27 Heat of formation + Delta-G solvation = 89.259289 kcal Electronic energy + Delta-G solvation = -16068.159903 eV Core-core repulsion = 13617.376978 eV Total energy + Delta-G solvation = -2450.782925 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.63941 -36.03949 -34.94835 -33.13982 -31.20840 -28.84234 -27.42501 -26.88864 -24.99516 -23.30784 -21.93789 -19.91684 -19.42548 -16.82172 -16.22505 -16.00933 -14.94209 -14.31364 -14.19968 -13.26885 -13.19073 -13.00365 -12.77913 -12.75328 -12.18486 -11.89929 -11.86140 -11.32312 -11.05009 -10.98458 -10.82946 -10.68526 -10.50460 -10.13296 -9.75658 -9.39278 -9.29918 -8.99920 -8.50680 -8.08063 -6.00310 -3.98686 2.17824 2.85010 3.30811 3.37649 3.41872 3.42622 4.44056 4.65196 4.78711 4.99777 5.06798 5.27419 5.29619 5.37136 5.49848 5.64194 5.85976 5.91528 6.00237 6.17050 6.18359 6.36023 6.41497 6.44028 6.53372 6.69895 6.79172 7.03532 7.12665 7.17520 7.51284 7.75846 8.59328 9.07122 9.28549 9.59350 11.13140 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.031772 B = 0.010510 C = 0.009443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.058511 B = 2663.438322 C = 2964.434754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.008 4.008 3 C -0.153 4.153 4 C -0.041 4.041 5 C 0.049 3.951 6 C 0.082 3.918 7 H 0.050 0.950 8 C -0.144 4.144 9 C -0.498 4.498 10 H 0.075 0.925 11 C 0.070 3.930 12 N -0.899 5.899 13 Si 0.883 3.117 14 H -0.278 1.278 15 H -0.298 1.298 16 H -0.265 1.265 17 N -0.255 5.255 18 N -0.112 5.112 19 N -0.304 5.304 20 C 0.086 3.914 21 H 0.051 0.949 22 H 0.074 0.926 23 H 0.060 0.940 24 H 0.069 0.931 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.086 0.914 28 H 0.060 0.940 29 H 0.042 0.958 30 H 0.027 0.973 31 H 0.263 0.737 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.596 -8.031 -14.053 16.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 C -0.210 4.210 4 C -0.171 4.171 5 C -0.089 4.089 6 C 0.062 3.938 7 H 0.068 0.932 8 C -0.201 4.201 9 C -0.537 4.537 10 H 0.094 0.906 11 C -0.131 4.131 12 N -0.538 5.538 13 Si 0.714 3.286 14 H -0.205 1.205 15 H -0.225 1.225 16 H -0.191 1.191 17 N -0.121 5.121 18 N -0.090 5.090 19 N -0.099 5.099 20 C -0.056 4.056 21 H 0.070 0.930 22 H 0.093 0.907 23 H 0.079 0.921 24 H 0.087 0.913 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.105 0.895 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.101 0.899 33 H 0.114 0.886 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.849 -8.897 -12.973 15.839 hybrid contribution -1.207 0.822 -0.852 1.691 sum -3.055 -8.075 -13.825 16.299 Atomic orbital electron populations 1.21979 0.93846 1.01851 1.03163 1.19460 0.96041 0.95908 0.91499 1.21984 1.01107 0.94318 1.03636 1.21868 1.03181 0.93364 0.98705 1.22076 1.00487 0.98355 0.87963 1.17875 0.91525 0.88436 0.95979 0.93221 1.22131 0.98004 0.99388 1.00620 1.20853 0.97876 1.04905 1.30017 0.90643 1.24958 0.97412 0.95982 0.94728 1.69886 1.35978 1.14031 1.33857 0.86922 0.86247 0.76184 0.79270 1.20528 1.22522 1.19059 1.75031 1.09021 1.02656 1.25414 1.78235 1.22002 1.22440 0.86281 1.46954 1.34969 1.20408 1.07531 1.22036 1.00471 0.97879 0.85185 0.93027 0.90686 0.92091 0.91281 0.92806 0.92436 0.89482 0.92107 0.93947 0.95433 0.92680 0.89874 0.88570 0.89242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.01 37.16 0.33 -1.70 16 2 C -0.01 -0.12 3.02 -91.77 -0.28 -0.40 16 3 C -0.15 -2.33 9.01 37.16 0.33 -2.00 16 4 C -0.04 -0.74 5.70 -82.09 -0.47 -1.21 16 5 C 0.05 1.11 5.51 -82.78 -0.46 0.66 16 6 C 0.08 1.96 1.13 -92.92 -0.11 1.86 16 7 H 0.05 1.13 3.04 -51.93 -0.16 0.97 16 8 C -0.14 -3.28 8.65 37.16 0.32 -2.96 16 9 C -0.50 -14.23 9.13 -34.44 -0.31 -14.55 16 10 H 0.08 2.44 7.98 -52.49 -0.42 2.02 16 11 C 0.07 2.03 5.45 -17.82 -0.10 1.94 16 12 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 13 Si 0.88 21.61 24.37 -169.99 -4.14 17.47 16 14 H -0.28 -6.73 6.87 56.52 0.39 -6.34 16 15 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 16 H -0.27 -5.98 6.53 56.52 0.37 -5.61 16 17 N -0.26 -6.16 12.41 33.29 0.41 -5.75 16 18 N -0.11 -2.34 13.17 60.35 0.79 -1.55 16 19 N -0.30 -5.18 3.74 -63.79 -0.24 -5.42 16 20 C 0.09 0.88 10.96 59.85 0.66 1.54 16 21 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 22 H 0.07 1.19 5.62 -51.93 -0.29 0.90 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.07 0.77 6.98 -51.93 -0.36 0.41 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.09 1.63 5.61 -51.93 -0.29 1.34 16 28 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 29 H 0.04 0.97 3.27 -51.93 -0.17 0.80 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 0.68 7.38 -51.92 -0.38 0.29 16 LS Contribution 269.06 15.07 4.05 4.05 Total: -1.00 -33.76 269.06 -3.06 -36.81 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -4.64 Total: -1.84 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -0.07 Total: -16.82 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 1.74 Total: -39.67 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.14 Total: 17.47 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -33.76 -3.06 -36.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260173388.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.071 kcal (2) G-P(sol) polarization free energy of solvation -33.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds