Wall clock time and date at job start Mon Mar 30 2020 02:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47010 * 2 1 4 4 C 1.50699 * 109.47319 * 120.00088 * 2 1 3 5 5 C 1.35347 * 126.91066 * 300.07350 * 4 2 1 6 6 C 1.50697 * 126.75247 * 359.96488 * 5 4 2 7 7 H 1.08997 * 109.47378 * 359.97438 * 6 5 4 8 8 C 1.53001 * 109.47389 * 120.00279 * 6 5 4 9 9 C 1.50702 * 109.46809 * 239.99803 * 6 5 4 10 10 H 1.07999 * 120.00355 * 0.02562 * 9 6 5 11 11 C 1.37878 * 119.99801 * 179.97438 * 9 6 5 12 12 N 1.31511 * 120.00114 * 180.02562 * 11 9 6 13 13 Si 1.86798 * 120.00090 * 0.02562 * 11 9 6 14 14 H 1.48495 * 109.47439 * 89.99731 * 13 11 9 15 15 H 1.48502 * 109.46992 * 209.99944 * 13 11 9 16 16 H 1.48502 * 109.47033 * 329.99289 * 13 11 9 17 17 N 1.33777 * 106.49588 * 180.22030 * 5 4 2 18 18 N 1.28634 * 108.88364 * 359.56610 * 17 5 4 19 19 N 1.28721 * 110.17783 * 0.44573 * 18 17 5 20 20 C 1.46497 * 125.86666 * 179.74050 * 19 18 17 21 21 H 1.09005 * 109.46865 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47072 * 300.00087 * 1 2 3 23 23 H 1.09002 * 109.47160 * 60.00185 * 1 2 3 24 24 H 1.08999 * 109.46635 * 240.00220 * 2 1 3 25 25 H 1.08996 * 109.47076 * 181.30062 * 3 2 1 26 26 H 1.09002 * 109.47399 * 301.30132 * 3 2 1 27 27 H 1.09000 * 109.47230 * 61.30143 * 3 2 1 28 28 H 1.09001 * 109.47557 * 59.99674 * 8 6 5 29 29 H 1.08996 * 109.47465 * 180.02562 * 8 6 5 30 30 H 1.09004 * 109.46797 * 299.99891 * 8 6 5 31 31 H 0.97000 * 120.00731 * 180.02562 * 12 11 9 32 32 H 1.09002 * 109.47604 * 264.39308 * 20 19 18 33 33 H 1.09002 * 109.47348 * 24.39631 * 20 19 18 34 34 H 1.09007 * 109.47061 * 144.39435 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.7921 -0.3730 2.5189 6 6 0.9682 0.7903 3.0078 7 1 0.5780 1.3436 2.1536 8 6 -0.1956 0.2710 3.8544 9 6 1.8306 1.7004 3.8439 10 1 2.8713 1.4607 4.0048 11 6 1.2912 2.8397 4.4026 12 7 2.0438 3.6342 5.1318 13 14 -0.5086 3.2547 4.1237 14 1 -1.3306 2.6391 5.1963 15 1 -0.6862 4.7289 4.1484 16 1 -0.9398 2.7263 2.8046 17 7 2.4345 -1.2719 3.2732 18 7 3.0254 -2.1156 2.5027 19 7 2.8137 -1.8145 1.2693 20 6 3.3296 -2.5423 0.1073 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 3.1297 1.4426 -0.0233 26 1 1.6577 1.9631 -0.8781 27 1 1.6959 1.9496 0.9014 28 1 0.1948 -0.2822 4.7087 29 1 -0.7918 1.1123 4.2076 30 1 -0.8194 -0.3874 3.2497 31 1 1.6644 4.4356 5.5252 32 1 4.2466 -2.0672 -0.2413 33 1 3.5393 -3.5743 0.3887 34 1 2.5867 -2.5270 -0.6903 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260173388.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:27 Heat of formation + Delta-G solvation = 64.048664 kcal Electronic energy + Delta-G solvation = -16069.253118 eV Core-core repulsion = 13617.376978 eV Total energy + Delta-G solvation = -2451.876140 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.12701 -37.48765 -36.42769 -34.82261 -33.15288 -30.35664 -28.55931 -27.99856 -27.04806 -24.96508 -23.33001 -21.43344 -20.90917 -18.71609 -17.74001 -17.43535 -16.72899 -15.84167 -15.48449 -14.90989 -14.69931 -14.19211 -14.06065 -13.94242 -13.83684 -13.31065 -13.18149 -12.97181 -12.74476 -12.45320 -12.15536 -12.08198 -12.04072 -11.82516 -11.52480 -11.27577 -10.96913 -10.70315 -10.63784 -9.66173 -8.23804 -6.27796 0.75038 1.36223 1.39419 1.51636 1.68346 1.77184 2.36952 3.10519 3.48862 3.74920 3.93338 4.08156 4.25409 4.31213 4.35503 4.47055 4.60919 4.68140 4.72457 4.82438 4.88574 4.93528 5.03379 5.07952 5.12920 5.14826 5.40503 5.45106 5.54660 5.70046 5.75004 5.89545 6.36342 6.75750 7.34201 7.73149 8.94193 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.031772 B = 0.010510 C = 0.009443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.058511 B = 2663.438322 C = 2964.434754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.007 4.007 3 C -0.153 4.153 4 C -0.021 4.021 5 C 0.008 3.992 6 C 0.089 3.911 7 H 0.070 0.930 8 C -0.141 4.141 9 C -0.500 4.500 10 H 0.014 0.986 11 C 0.010 3.990 12 N -0.954 5.954 13 Si 0.949 3.051 14 H -0.271 1.271 15 H -0.296 1.296 16 H -0.228 1.228 17 N -0.312 5.312 18 N -0.133 5.133 19 N -0.289 5.289 20 C 0.068 3.932 21 H 0.062 0.938 22 H 0.046 0.954 23 H 0.093 0.907 24 H 0.116 0.884 25 H 0.044 0.956 26 H 0.093 0.907 27 H 0.045 0.955 28 H 0.037 0.963 29 H 0.041 0.959 30 H 0.060 0.940 31 H 0.265 0.735 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.618 -8.995 -17.853 20.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 C -0.210 4.210 4 C -0.153 4.153 5 C -0.132 4.132 6 C 0.068 3.932 7 H 0.087 0.913 8 C -0.198 4.198 9 C -0.539 4.539 10 H 0.032 0.968 11 C -0.187 4.187 12 N -0.594 5.594 13 Si 0.775 3.225 14 H -0.198 1.198 15 H -0.223 1.223 16 H -0.151 1.151 17 N -0.177 5.177 18 N -0.111 5.111 19 N -0.084 5.084 20 C -0.071 4.071 21 H 0.081 0.919 22 H 0.065 0.935 23 H 0.112 0.888 24 H 0.134 0.866 25 H 0.064 0.936 26 H 0.112 0.888 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.122 0.878 33 H 0.130 0.870 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.847 -9.918 -16.799 19.884 hybrid contribution -0.402 1.045 0.245 1.146 sum -4.249 -8.872 -16.555 19.257 Atomic orbital electron populations 1.21987 0.92662 1.02727 1.03383 1.19739 0.96942 0.95017 0.91079 1.21967 1.00729 0.95109 1.03230 1.22401 1.01351 0.92888 0.98708 1.22039 1.02323 0.98821 0.89990 1.17728 0.91295 0.88424 0.95719 0.91253 1.22053 0.97930 0.99652 1.00191 1.21008 0.95980 1.06159 1.30740 0.96752 1.25910 1.02953 0.95586 0.94212 1.70067 1.38683 1.14948 1.35736 0.85849 0.79504 0.76035 0.81158 1.19779 1.22322 1.15079 1.74938 1.10836 1.04230 1.27683 1.78087 1.22595 1.22477 0.87897 1.47466 1.33121 1.19871 1.07920 1.22697 1.02454 0.98272 0.83664 0.91887 0.93454 0.88810 0.86581 0.93631 0.88791 0.93591 0.94368 0.94014 0.92093 0.92575 0.87823 0.87019 0.85355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 9.01 71.98 0.65 -2.67 16 2 C -0.01 -0.18 3.02 -11.54 -0.03 -0.21 16 3 C -0.15 -4.22 9.01 71.98 0.65 -3.57 16 4 C -0.02 -0.72 5.70 41.35 0.24 -0.48 16 5 C 0.01 0.35 5.51 41.59 0.23 0.57 16 6 C 0.09 4.26 1.13 -12.29 -0.01 4.24 16 7 H 0.07 3.06 3.04 -2.39 -0.01 3.05 16 8 C -0.14 -6.33 8.65 71.98 0.62 -5.71 16 9 C -0.50 -30.05 9.13 25.60 0.23 -29.82 16 10 H 0.01 0.99 7.98 -2.91 -0.02 0.97 16 11 C 0.01 0.57 5.45 84.66 0.46 1.03 16 12 N -0.95 -61.68 13.96 21.45 0.30 -61.38 16 13 Si 0.95 44.49 24.37 68.60 1.67 46.16 16 14 H -0.27 -12.38 6.87 99.48 0.68 -11.70 16 15 H -0.30 -13.69 7.11 99.48 0.71 -12.99 16 16 H -0.23 -9.24 6.53 99.48 0.65 -8.59 16 17 N -0.31 -15.57 12.41 -48.60 -0.60 -16.17 16 18 N -0.13 -5.59 13.17 37.02 0.49 -5.10 16 19 N -0.29 -9.23 3.74 -355.73 -1.33 -10.56 16 20 C 0.07 1.10 10.96 127.77 1.40 2.50 16 21 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 22 H 0.05 1.32 5.62 -2.39 -0.01 1.31 16 23 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.12 1.81 6.98 -2.39 -0.02 1.79 16 25 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.09 1.89 8.14 -2.39 -0.02 1.88 16 27 H 0.05 1.66 5.61 -2.39 -0.01 1.65 16 28 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.04 1.84 3.27 -2.39 -0.01 1.84 16 30 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 31 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 32 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.13 1.14 7.38 -2.38 -0.02 1.12 16 Total: -1.00 -80.73 269.06 5.97 -74.76 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: 1.01 Total: 6.40 kcal Atomic # 6 Polarization: -38.54 SS G_CDS: 4.43 Total: -34.11 kcal Atomic # 7 Polarization: -92.06 SS G_CDS: -1.15 Total: -93.21 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.67 Total: 46.16 kcal Total: -80.73 5.97 -74.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260173388.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.809 kcal (2) G-P(sol) polarization free energy of solvation -80.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds