Wall clock time and date at job start Mon Mar 30 2020 02:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99565 * 2 1 4 4 H 1.48499 * 109.47272 * 240.27201 * 3 2 1 5 5 H 1.48496 * 109.47634 * 0.27492 * 3 2 1 6 6 H 1.48506 * 109.46914 * 120.27566 * 3 2 1 7 7 C 1.37878 * 119.99976 * 180.27477 * 2 1 3 8 8 H 1.07999 * 119.99417 * 179.72693 * 7 2 1 9 9 C 1.50700 * 120.00052 * 359.72654 * 7 2 1 10 10 C 1.52996 * 109.46868 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.47366 * 305.00051 * 10 9 7 12 12 C 1.52997 * 109.47185 * 65.00161 * 10 9 7 13 13 C 1.53945 * 113.73508 * 280.85626 * 12 10 9 14 14 N 1.48187 * 86.10358 * 221.95755 * 13 12 10 15 15 C 1.47962 * 90.79866 * 24.59900 * 14 13 12 16 16 C 1.52996 * 109.47030 * 184.99764 * 10 9 7 17 17 C 1.54266 * 110.03450 * 171.93677 * 16 10 9 18 18 C 1.54886 * 104.20072 * 217.11020 * 17 16 10 19 19 C 1.54886 * 102.74925 * 37.93874 * 18 17 16 20 20 C 1.53878 * 110.03296 * 54.77708 * 16 10 9 21 21 H 0.96998 * 120.00155 * 359.72888 * 1 2 3 22 22 H 1.09004 * 109.46899 * 299.99972 * 9 7 2 23 23 H 1.08997 * 109.47004 * 59.99815 * 9 7 2 24 24 H 1.09001 * 112.94374 * 52.42122 * 12 10 9 25 25 H 1.09003 * 113.75346 * 336.24165 * 13 12 10 26 26 H 1.09001 * 113.75612 * 107.60007 * 13 12 10 27 27 H 1.00898 * 111.07535 * 137.51877 * 14 13 12 28 28 H 1.09001 * 113.76011 * 221.08743 * 15 14 13 29 29 H 1.08997 * 113.75913 * 89.72416 * 15 14 13 30 30 H 1.08996 * 110.02146 * 293.38159 * 16 10 9 31 31 H 1.08997 * 110.48660 * 335.79205 * 17 16 10 32 32 H 1.09001 * 110.48423 * 98.42715 * 17 16 10 33 33 H 1.09000 * 110.75384 * 279.62596 * 18 17 16 34 34 H 1.09000 * 110.91813 * 156.33449 * 18 17 16 35 35 H 1.08992 * 110.48669 * 203.37808 * 19 18 17 36 36 H 1.09004 * 110.59637 * 80.79686 * 19 18 17 37 37 H 1.09004 * 110.03217 * 238.57081 * 20 16 10 38 38 H 1.08997 * 110.03027 * 359.97438 * 20 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.0978 1.6994 -1.2158 5 1 1.2841 2.7465 0.0067 6 1 3.1079 1.6935 1.2092 7 6 2.0046 -1.1940 -0.0057 8 1 3.0846 -1.1939 -0.0102 9 6 1.2511 -2.4992 -0.0058 10 6 2.2454 -3.6620 -0.0133 11 1 2.9257 -3.5529 -0.8579 12 6 3.0460 -3.6569 1.2904 13 6 4.1872 -2.6238 1.3128 14 7 5.0001 -3.6857 1.9512 15 6 4.1466 -4.7318 1.3459 16 6 1.4841 -4.9831 -0.1390 17 6 2.4752 -6.1461 -0.3508 18 6 1.7499 -7.0872 -1.3445 19 6 1.0426 -6.0951 -2.3007 20 6 0.5732 -4.9507 -1.3788 21 1 -0.4850 0.8400 0.0040 22 1 0.6281 -2.5590 0.8867 23 1 0.6208 -2.5547 -0.8932 24 1 2.4132 -3.6307 2.1776 25 1 4.5393 -2.3371 0.3219 26 1 3.9928 -1.7688 1.9603 27 1 5.9318 -3.7110 1.5649 28 1 3.9198 -5.5580 2.0199 29 1 4.4869 -5.0630 0.3648 30 1 0.8887 -5.1575 0.7572 31 1 3.4064 -5.7799 -0.7828 32 1 2.6668 -6.6603 0.5910 33 1 1.0210 -7.7095 -0.8252 34 1 2.4649 -7.7046 -1.8882 35 1 0.1888 -6.5720 -2.7818 36 1 1.7407 -5.7201 -3.0491 37 1 -0.4641 -5.1101 -1.0843 38 1 0.6733 -3.9936 -1.8907 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260307687.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:44 Heat of formation + Delta-G solvation = 3.872607 kcal Electronic energy + Delta-G solvation = -16191.792071 eV Core-core repulsion = 13840.846845 eV Total energy + Delta-G solvation = -2350.945226 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.58783 -37.31974 -33.62750 -31.66305 -28.74199 -27.64207 -26.28792 -25.11144 -23.77852 -21.05784 -20.32922 -18.87104 -18.56142 -16.44658 -15.97201 -15.06007 -14.78288 -14.53111 -14.22344 -13.33989 -13.04367 -12.42648 -12.36754 -12.02541 -11.96117 -11.28135 -11.12776 -10.95637 -10.74375 -10.73222 -10.51131 -10.40640 -10.27344 -10.24205 -10.13306 -9.55323 -9.51240 -9.02987 -8.85847 -8.32500 -8.20073 -5.95253 -3.95745 3.34091 3.39287 3.41015 4.48591 4.67324 4.98906 5.04306 5.08343 5.29423 5.40366 5.42787 5.75380 5.83640 5.88652 5.92480 5.97777 5.99415 6.06319 6.16539 6.18462 6.25431 6.30604 6.37998 6.54535 6.57887 6.63923 6.65237 6.75633 6.80331 6.93222 7.14843 7.19963 7.69829 7.77013 7.88901 8.05987 8.48563 9.10410 9.67301 11.16109 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.025071 B = 0.009607 C = 0.007369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.581669 B = 2913.971858 C = 3798.942227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.884 3.116 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.516 4.516 8 H 0.061 0.939 9 C 0.026 3.974 10 C -0.068 4.068 11 H 0.055 0.945 12 C -0.084 4.084 13 C 0.027 3.973 14 N -0.651 5.651 15 C -0.001 4.001 16 C -0.083 4.083 17 C -0.120 4.120 18 C -0.126 4.126 19 C -0.124 4.124 20 C -0.123 4.123 21 H 0.259 0.741 22 H 0.014 0.986 23 H 0.022 0.978 24 H 0.087 0.913 25 H 0.065 0.935 26 H 0.087 0.913 27 H 0.305 0.695 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.927 -11.114 -1.600 12.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.712 3.288 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.079 0.921 9 C -0.010 4.010 10 C -0.087 4.087 11 H 0.073 0.927 12 C -0.103 4.103 13 C -0.103 4.103 14 N -0.276 5.276 15 C -0.131 4.131 16 C -0.101 4.101 17 C -0.158 4.158 18 C -0.164 4.164 19 C -0.162 4.162 20 C -0.160 4.160 21 H 0.069 0.931 22 H 0.032 0.968 23 H 0.041 0.959 24 H 0.105 0.895 25 H 0.083 0.917 26 H 0.105 0.895 27 H 0.116 0.884 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.598 -10.965 -0.745 11.914 hybrid contribution 0.611 1.036 -0.962 1.540 sum 5.210 -9.930 -1.707 11.342 Atomic orbital electron populations 1.69953 1.05980 1.26448 1.51199 1.24996 0.94732 0.98965 0.95674 0.86794 0.79704 0.83798 0.78525 1.20432 1.21430 1.20271 1.21387 0.93288 0.90898 1.49872 0.92061 1.19206 0.93622 0.90887 0.97316 1.21334 0.97593 0.94739 0.94997 0.92681 1.22768 0.94776 0.93368 0.99340 1.23747 0.92886 0.95725 0.97902 1.66974 1.04058 1.04961 1.51559 1.24030 0.95321 0.96091 0.97691 1.21762 0.95858 0.94897 0.97627 1.22657 0.98593 0.96173 0.98357 1.22515 0.98989 0.97411 0.97488 1.22365 0.99443 0.96560 0.97824 1.22290 0.98662 0.99006 0.96072 0.93140 0.96799 0.95949 0.89513 0.91692 0.89473 0.88380 0.90748 0.91803 0.91853 0.91662 0.92231 0.92111 0.92524 0.92588 0.92121 0.92592 0.90298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.54 13.29 55.43 0.74 -25.81 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.88 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -13.78 8.23 -34.44 -0.28 -14.07 16 8 H 0.06 1.56 4.93 -52.49 -0.26 1.30 16 9 C 0.03 0.65 4.21 -27.88 -0.12 0.53 16 10 C -0.07 -1.31 1.21 -90.63 -0.11 -1.42 16 11 H 0.05 1.10 7.88 -51.93 -0.41 0.69 16 12 C -0.08 -1.54 3.17 -89.68 -0.28 -1.82 16 13 C 0.03 0.49 6.18 -2.63 -0.02 0.48 16 14 N -0.65 -10.64 8.53 -116.79 -1.00 -11.64 16 15 C 0.00 -0.02 6.34 -2.76 -0.02 -0.04 16 16 C -0.08 -1.37 2.51 -89.50 -0.22 -1.60 16 17 C -0.12 -1.65 4.52 -25.07 -0.11 -1.77 16 18 C -0.13 -1.57 6.91 -24.74 -0.17 -1.74 16 19 C -0.12 -1.69 6.83 -25.08 -0.17 -1.86 16 20 C -0.12 -2.02 5.85 -25.62 -0.15 -2.17 16 21 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 22 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.02 0.58 6.01 -51.93 -0.31 0.27 16 24 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 25 H 0.06 1.21 7.10 -51.93 -0.37 0.85 16 26 H 0.09 1.78 8.14 -51.93 -0.42 1.35 16 27 H 0.30 4.34 8.92 -39.29 -0.35 3.98 16 28 H 0.07 1.08 7.77 -51.93 -0.40 0.68 16 29 H 0.06 0.91 5.95 -51.93 -0.31 0.60 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.06 0.90 5.90 -51.93 -0.31 0.60 16 32 H 0.06 0.77 7.27 -51.93 -0.38 0.39 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.08 1.48 5.97 -51.93 -0.31 1.17 16 LS Contribution 283.38 15.07 4.27 4.27 Total: -1.00 -28.29 283.38 -9.11 -37.40 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -6.34 Total: 3.34 kcal Atomic # 6 Polarization: -22.22 SS G_CDS: -1.76 Total: -23.97 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: -0.26 Total: -37.44 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -28.29 -9.11 -37.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260307687.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.270 kcal (2) G-P(sol) polarization free energy of solvation -28.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds