Wall clock time and date at job start Mon Mar 30 2020 02:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00010 * 2 1 4 4 H 1.48503 * 109.47292 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47327 * 300.00101 * 3 2 1 6 6 H 1.48504 * 109.46917 * 59.99532 * 3 2 1 7 7 C 1.37878 * 120.00333 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00164 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99595 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46969 * 174.37767 * 9 7 2 11 11 H 1.09009 * 109.46746 * 51.67606 * 10 9 7 12 12 C 1.53000 * 109.47353 * 291.67601 * 10 9 7 13 13 C 1.53942 * 113.73190 * 162.42904 * 12 10 9 14 14 N 1.47963 * 86.18008 * 221.92276 * 13 12 10 15 15 C 1.47959 * 90.76345 * 24.69046 * 14 13 12 16 16 C 1.52997 * 109.47298 * 171.67085 * 10 9 7 17 17 C 1.54266 * 110.03474 * 297.91188 * 16 10 9 18 18 C 1.54966 * 104.16002 * 217.12884 * 17 16 10 19 19 C 1.54892 * 102.77430 * 37.89041 * 18 17 16 20 20 C 1.53876 * 110.03462 * 180.69210 * 16 10 9 21 21 H 0.97004 * 119.99884 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47013 * 54.38284 * 9 7 2 23 23 H 1.09001 * 109.47282 * 294.38169 * 9 7 2 24 24 H 1.08995 * 112.93705 * 294.13699 * 12 10 9 25 25 H 1.09004 * 113.76054 * 336.24194 * 13 12 10 26 26 H 1.08994 * 113.75610 * 107.60595 * 13 12 10 27 27 H 1.00903 * 110.99569 * 271.79821 * 14 13 12 28 28 H 1.08993 * 113.76215 * 220.99339 * 15 14 13 29 29 H 1.09000 * 113.75867 * 89.62741 * 15 14 13 30 30 H 1.09001 * 110.01256 * 59.30643 * 16 10 9 31 31 H 1.08993 * 110.48555 * 335.78544 * 17 16 10 32 32 H 1.09005 * 110.48442 * 98.42357 * 17 16 10 33 33 H 1.08992 * 110.72635 * 279.57565 * 18 17 16 34 34 H 1.08998 * 110.76349 * 156.22216 * 18 17 16 35 35 H 1.08994 * 110.48498 * 203.40123 * 19 18 17 36 36 H 1.09002 * 110.59900 * 80.81501 * 19 18 17 37 37 H 1.09006 * 110.02935 * 238.57531 * 20 16 10 38 38 H 1.08995 * 110.02931 * 359.95526 * 20 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2393 -3.6586 -0.1401 11 1 3.0256 -3.5586 0.6082 12 6 2.8598 -3.6331 -1.5384 13 6 4.1521 -4.4610 -1.6580 14 7 4.6816 -3.3356 -2.4594 15 6 3.7426 -2.3999 -1.8022 16 6 1.5036 -4.9839 0.0673 17 6 0.9171 -5.0453 1.4928 18 6 1.0934 -6.5267 1.9118 19 6 2.4689 -6.8938 1.3018 20 6 2.4897 -6.1589 -0.0544 21 1 -0.4850 0.8401 -0.0004 22 1 0.5514 -2.5147 -0.8351 23 1 0.7016 -2.6015 0.9364 24 1 2.1353 -3.8310 -2.3283 25 1 4.6697 -4.6067 -0.7098 26 1 4.0311 -5.3845 -2.2241 27 1 4.4548 -3.4490 -3.4360 28 1 3.2945 -1.6767 -2.4834 29 1 4.1404 -1.9427 -0.8961 30 1 0.7067 -5.0875 -0.6692 31 1 1.4739 -4.3905 2.1629 32 1 -0.1386 -4.7739 1.4829 33 1 0.3040 -7.1450 1.4846 34 1 1.1146 -6.6213 2.9975 35 1 2.5451 -7.9709 1.1532 36 1 3.2784 -6.5395 1.9401 37 1 2.1708 -6.8331 -0.8494 38 1 3.4922 -5.7850 -0.2620 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260307693.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:46 Heat of formation + Delta-G solvation = 10.944667 kcal Electronic energy + Delta-G solvation = -16210.460929 eV Core-core repulsion = 13859.822370 eV Total energy + Delta-G solvation = -2350.638559 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.66038 -37.35034 -33.62201 -31.65676 -28.72007 -27.69510 -25.99822 -25.05795 -23.77788 -20.97403 -20.14033 -19.38635 -18.68799 -16.25885 -16.07729 -15.36933 -14.61364 -14.35089 -13.92533 -13.31096 -12.75347 -12.70748 -12.17262 -11.94924 -11.86677 -11.50668 -11.20512 -11.02198 -10.84499 -10.70659 -10.62405 -10.46063 -10.33977 -10.27466 -10.08832 -9.66709 -9.56437 -8.85646 -8.77539 -8.34469 -7.84219 -5.97065 -3.97282 3.31580 3.40281 3.43778 4.47739 4.63204 4.98576 5.05992 5.11042 5.28850 5.39084 5.41939 5.74812 5.80796 5.88096 5.90370 5.98298 6.06888 6.14441 6.19744 6.21125 6.28072 6.32611 6.41844 6.50092 6.60332 6.62247 6.70270 6.75784 6.82955 6.95759 7.10778 7.21406 7.72582 7.86278 7.87267 8.04385 8.47269 9.09221 9.65681 11.14216 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.025775 B = 0.009528 C = 0.007429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.075789 B = 2937.917600 C = 3768.297551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.882 3.118 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.515 4.515 8 H 0.065 0.935 9 C 0.028 3.972 10 C -0.066 4.066 11 H 0.058 0.942 12 C -0.130 4.130 13 C 0.015 3.985 14 N -0.679 5.679 15 C 0.041 3.959 16 C -0.084 4.084 17 C -0.114 4.114 18 C -0.127 4.127 19 C -0.123 4.123 20 C -0.133 4.133 21 H 0.258 0.742 22 H 0.016 0.984 23 H 0.015 0.985 24 H 0.075 0.925 25 H 0.092 0.908 26 H 0.059 0.941 27 H 0.324 0.676 28 H 0.068 0.932 29 H 0.107 0.893 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.051 0.949 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.051 -11.129 -0.550 11.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.710 3.290 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.553 4.553 8 H 0.083 0.917 9 C -0.009 4.009 10 C -0.085 4.085 11 H 0.077 0.923 12 C -0.150 4.150 13 C -0.114 4.114 14 N -0.305 5.305 15 C -0.088 4.088 16 C -0.103 4.103 17 C -0.152 4.152 18 C -0.164 4.164 19 C -0.161 4.161 20 C -0.171 4.171 21 H 0.067 0.933 22 H 0.034 0.966 23 H 0.034 0.966 24 H 0.094 0.906 25 H 0.110 0.890 26 H 0.077 0.923 27 H 0.137 0.863 28 H 0.087 0.913 29 H 0.125 0.875 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.707 -10.824 -0.277 11.807 hybrid contribution -0.768 0.792 -0.398 1.172 sum 3.939 -10.032 -0.675 10.799 Atomic orbital electron populations 1.69978 1.06017 1.26223 1.51340 1.24999 0.94717 0.99010 0.95663 0.86687 0.80360 0.84425 0.77504 1.19592 1.21194 1.21193 1.21523 0.93320 0.90856 1.49619 0.91702 1.19133 0.93720 0.91034 0.97055 1.21303 0.98414 0.94455 0.94347 0.92321 1.23967 0.96098 0.95748 0.99142 1.23810 0.95019 0.94012 0.98579 1.65257 1.52561 1.06586 1.06076 1.23800 0.90574 0.94657 0.99728 1.21794 0.96948 0.94969 0.96539 1.22399 1.00903 0.95068 0.96798 1.22531 0.96945 0.97400 0.99548 1.22339 0.97502 0.99022 0.97215 1.22548 1.01133 0.96959 0.96414 0.93264 0.96602 0.96628 0.90619 0.89039 0.92255 0.86298 0.91327 0.87471 0.92144 0.91286 0.92022 0.92218 0.92338 0.92714 0.92030 0.93011 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.42 13.29 55.43 0.74 -25.68 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.88 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.52 -13.64 7.55 -34.44 -0.26 -13.90 16 8 H 0.07 1.66 4.89 -52.49 -0.26 1.41 16 9 C 0.03 0.67 4.35 -27.88 -0.12 0.55 16 10 C -0.07 -1.28 1.13 -90.62 -0.10 -1.38 16 11 H 0.06 1.18 8.03 -51.92 -0.42 0.77 16 12 C -0.13 -2.32 3.13 -89.68 -0.28 -2.60 16 13 C 0.02 0.24 6.00 -2.76 -0.02 0.22 16 14 N -0.68 -11.23 8.56 -117.00 -1.00 -12.23 16 15 C 0.04 0.78 6.49 -2.77 -0.02 0.76 16 16 C -0.08 -1.40 2.50 -89.50 -0.22 -1.62 16 17 C -0.11 -1.86 5.16 -25.03 -0.13 -1.99 16 18 C -0.13 -1.68 6.91 -24.70 -0.17 -1.85 16 19 C -0.12 -1.57 6.83 -25.07 -0.17 -1.74 16 20 C -0.13 -1.86 5.71 -25.61 -0.15 -2.00 16 21 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 22 H 0.02 0.42 8.13 -51.93 -0.42 0.00 16 23 H 0.02 0.41 6.99 -51.93 -0.36 0.04 16 24 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 25 H 0.09 1.42 7.00 -51.93 -0.36 1.05 16 26 H 0.06 0.80 8.00 -51.93 -0.42 0.39 16 27 H 0.32 4.77 8.89 -39.29 -0.35 4.42 16 28 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 29 H 0.11 2.25 5.84 -51.93 -0.30 1.94 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.07 1.20 7.76 -51.93 -0.40 0.80 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.08 1.07 3.94 -51.93 -0.20 0.87 16 LS Contribution 284.98 15.07 4.29 4.29 Total: -1.00 -28.12 284.98 -9.17 -37.28 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -6.44 Total: 4.09 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: -1.74 Total: -24.07 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: -0.26 Total: -37.91 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.12 -9.17 -37.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260307693.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.226 kcal (2) G-P(sol) polarization free energy of solvation -28.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds