Wall clock time and date at job start Mon Mar 30 2020 02:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00010 * 2 1 4 4 H 1.48503 * 109.47292 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47327 * 300.00101 * 3 2 1 6 6 H 1.48504 * 109.46917 * 59.99532 * 3 2 1 7 7 C 1.37878 * 120.00333 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00164 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99595 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46969 * 174.37767 * 9 7 2 11 11 H 1.09009 * 109.46746 * 51.67606 * 10 9 7 12 12 C 1.53000 * 109.47353 * 291.67601 * 10 9 7 13 13 C 1.53942 * 113.73190 * 162.42904 * 12 10 9 14 14 N 1.47963 * 86.18008 * 221.92276 * 13 12 10 15 15 C 1.47959 * 90.76345 * 24.69046 * 14 13 12 16 16 C 1.52997 * 109.47298 * 171.67085 * 10 9 7 17 17 C 1.54266 * 110.03474 * 297.91188 * 16 10 9 18 18 C 1.54966 * 104.16002 * 217.12884 * 17 16 10 19 19 C 1.54892 * 102.77430 * 37.89041 * 18 17 16 20 20 C 1.53876 * 110.03462 * 180.69210 * 16 10 9 21 21 H 0.97004 * 119.99884 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47013 * 54.38284 * 9 7 2 23 23 H 1.09001 * 109.47282 * 294.38169 * 9 7 2 24 24 H 1.08995 * 112.93705 * 294.13699 * 12 10 9 25 25 H 1.09004 * 113.76054 * 336.24194 * 13 12 10 26 26 H 1.08994 * 113.75610 * 107.60595 * 13 12 10 27 27 H 1.00903 * 110.99569 * 271.79821 * 14 13 12 28 28 H 1.08993 * 113.76215 * 220.99339 * 15 14 13 29 29 H 1.09000 * 113.75867 * 89.62741 * 15 14 13 30 30 H 1.09001 * 110.01256 * 59.30643 * 16 10 9 31 31 H 1.08993 * 110.48555 * 335.78544 * 17 16 10 32 32 H 1.09005 * 110.48442 * 98.42357 * 17 16 10 33 33 H 1.08992 * 110.72635 * 279.57565 * 18 17 16 34 34 H 1.08998 * 110.76349 * 156.22216 * 18 17 16 35 35 H 1.08994 * 110.48498 * 203.40123 * 19 18 17 36 36 H 1.09002 * 110.59900 * 80.81501 * 19 18 17 37 37 H 1.09006 * 110.02935 * 238.57531 * 20 16 10 38 38 H 1.08995 * 110.02931 * 359.95526 * 20 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2393 -3.6586 -0.1401 11 1 3.0256 -3.5586 0.6082 12 6 2.8598 -3.6331 -1.5384 13 6 4.1521 -4.4610 -1.6580 14 7 4.6816 -3.3356 -2.4594 15 6 3.7426 -2.3999 -1.8022 16 6 1.5036 -4.9839 0.0673 17 6 0.9171 -5.0453 1.4928 18 6 1.0934 -6.5267 1.9118 19 6 2.4689 -6.8938 1.3018 20 6 2.4897 -6.1589 -0.0544 21 1 -0.4850 0.8401 -0.0004 22 1 0.5514 -2.5147 -0.8351 23 1 0.7016 -2.6015 0.9364 24 1 2.1353 -3.8310 -2.3283 25 1 4.6697 -4.6067 -0.7098 26 1 4.0311 -5.3845 -2.2241 27 1 4.4548 -3.4490 -3.4360 28 1 3.2945 -1.6767 -2.4834 29 1 4.1404 -1.9427 -0.8961 30 1 0.7067 -5.0875 -0.6692 31 1 1.4739 -4.3905 2.1629 32 1 -0.1386 -4.7739 1.4829 33 1 0.3040 -7.1450 1.4846 34 1 1.1146 -6.6213 2.9975 35 1 2.5451 -7.9709 1.1532 36 1 3.2784 -6.5395 1.9401 37 1 2.1708 -6.8331 -0.8494 38 1 3.4922 -5.7850 -0.2620 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260307693.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:46 Heat of formation + Delta-G solvation = -6.691201 kcal Electronic energy + Delta-G solvation = -16211.225678 eV Core-core repulsion = 13859.822370 eV Total energy + Delta-G solvation = -2351.403307 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.08312 -38.61151 -35.50433 -33.43349 -30.07416 -29.19821 -27.47140 -26.48798 -25.55340 -22.61115 -21.32716 -20.87441 -20.04806 -18.31490 -17.44671 -16.74864 -16.27713 -15.82945 -15.40923 -14.69354 -14.41765 -13.96715 -13.76893 -13.48797 -13.43941 -13.18079 -12.94266 -12.67042 -12.62170 -12.09749 -12.00641 -11.81628 -11.69641 -11.65875 -11.37737 -11.21644 -11.09371 -10.68356 -10.53829 -10.46830 -9.24782 -8.13033 -6.18904 1.37763 1.40346 1.51367 2.43211 3.18066 3.31056 3.71812 3.83737 3.88446 3.97763 4.11204 4.45599 4.60368 4.65023 4.68261 4.80540 4.82110 4.85558 4.86251 4.92457 4.99988 5.04443 5.12527 5.17996 5.21916 5.26714 5.35480 5.36397 5.44463 5.54471 5.60189 5.63480 5.73787 5.87584 5.95683 6.36646 6.56230 6.97755 7.48055 8.99142 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.025775 B = 0.009528 C = 0.007429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.075789 B = 2937.917600 C = 3768.297551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.000 4.000 3 Si 0.946 3.054 4 H -0.260 1.260 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.517 4.517 8 H 0.074 0.926 9 C 0.035 3.965 10 C -0.054 4.054 11 H 0.051 0.949 12 C -0.132 4.132 13 C 0.034 3.966 14 N -0.675 5.675 15 C 0.036 3.964 16 C -0.083 4.083 17 C -0.120 4.120 18 C -0.119 4.119 19 C -0.119 4.119 20 C -0.127 4.127 21 H 0.258 0.742 22 H -0.017 1.017 23 H -0.012 1.012 24 H 0.073 0.927 25 H 0.096 0.904 26 H 0.090 0.910 27 H 0.337 0.663 28 H 0.052 0.948 29 H 0.087 0.913 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.043 0.957 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.900 -12.884 -0.870 14.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.197 4.197 3 Si 0.772 3.228 4 H -0.184 1.184 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.092 0.908 9 C -0.002 4.002 10 C -0.073 4.073 11 H 0.070 0.930 12 C -0.151 4.151 13 C -0.096 4.096 14 N -0.302 5.302 15 C -0.093 4.093 16 C -0.102 4.102 17 C -0.157 4.157 18 C -0.157 4.157 19 C -0.157 4.157 20 C -0.164 4.164 21 H 0.066 0.934 22 H 0.001 0.999 23 H 0.007 0.993 24 H 0.091 0.909 25 H 0.114 0.886 26 H 0.108 0.892 27 H 0.152 0.848 28 H 0.070 0.930 29 H 0.105 0.895 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.576 -12.593 -0.603 14.219 hybrid contribution -1.385 1.345 -0.299 1.953 sum 5.191 -11.248 -0.902 12.420 Atomic orbital electron populations 1.70117 1.07683 1.27001 1.53063 1.25835 0.95464 1.02699 0.95717 0.85667 0.79580 0.80170 0.77334 1.18356 1.20977 1.21070 1.21940 0.93932 0.91638 1.47982 0.90799 1.19001 0.93978 0.93013 0.94182 1.21100 0.96977 0.93910 0.95363 0.93011 1.23980 0.97070 0.96321 0.97779 1.23778 0.92265 0.94490 0.99024 1.65191 1.51688 1.06317 1.07028 1.23598 0.91628 0.95134 0.98941 1.21755 0.97272 0.94836 0.96347 1.22387 0.99417 0.97401 0.96528 1.22504 0.98000 0.94689 1.00496 1.22342 0.96793 1.00383 0.96146 1.22494 1.00156 0.95814 0.97947 0.93355 0.99887 0.99328 0.90883 0.88615 0.89202 0.84823 0.92955 0.89498 0.93230 0.93161 0.93853 0.91155 0.91176 0.90195 0.91844 0.91357 0.89986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.18 13.29 21.45 0.28 -56.90 16 2 C 0.00 -0.03 5.46 84.66 0.46 0.44 16 3 Si 0.95 44.51 29.54 68.60 2.03 46.53 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 6 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 7 C -0.52 -28.11 7.55 25.60 0.19 -27.91 16 8 H 0.07 3.84 4.89 -2.91 -0.01 3.82 16 9 C 0.04 1.80 4.35 29.85 0.13 1.93 16 10 C -0.05 -2.12 1.13 -10.80 -0.01 -2.13 16 11 H 0.05 2.09 8.03 -2.38 -0.02 2.07 16 12 C -0.13 -4.60 3.13 -10.14 -0.03 -4.63 16 13 C 0.03 0.93 6.00 86.41 0.52 1.45 16 14 N -0.68 -20.81 8.56 -524.09 -4.48 -25.29 16 15 C 0.04 1.37 6.49 86.41 0.56 1.93 16 16 C -0.08 -2.74 2.50 -10.07 -0.03 -2.77 16 17 C -0.12 -3.93 5.16 31.70 0.16 -3.76 16 18 C -0.12 -2.92 6.91 31.91 0.22 -2.70 16 19 C -0.12 -2.62 6.83 31.67 0.22 -2.40 16 20 C -0.13 -3.15 5.71 31.32 0.18 -2.97 16 21 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 22 H -0.02 -0.99 8.13 -2.39 -0.02 -1.01 16 23 H -0.01 -0.65 6.99 -2.39 -0.02 -0.66 16 24 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 25 H 0.10 2.63 7.00 -2.39 -0.02 2.62 16 26 H 0.09 2.01 8.00 -2.39 -0.02 1.99 16 27 H 0.34 9.06 8.89 -89.69 -0.80 8.26 16 28 H 0.05 2.10 8.14 -2.39 -0.02 2.09 16 29 H 0.09 3.64 5.84 -2.39 -0.01 3.62 16 30 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 31 H 0.05 1.81 7.76 -2.39 -0.02 1.79 16 32 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.06 1.38 8.14 -2.39 -0.02 1.37 16 37 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.08 1.97 3.94 -2.39 -0.01 1.96 16 Total: -1.00 -61.90 284.98 0.63 -61.27 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.23 Total: 17.92 kcal Atomic # 6 Polarization: -46.11 SS G_CDS: 2.57 Total: -43.53 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: -4.20 Total: -82.19 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -61.90 0.63 -61.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260307693.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.579 kcal (2) G-P(sol) polarization free energy of solvation -61.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds