Wall clock time and date at job start Mon Mar 30 2020 03:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27725 * 3 2 1 5 5 H 1.48495 * 109.47159 * 0.27736 * 3 2 1 6 6 H 1.48505 * 109.47290 * 120.27720 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 H 1.09002 * 110.63028 * 61.64728 * 9 7 2 11 11 C 1.55147 * 110.70534 * 298.54951 * 9 7 2 12 12 C 1.54906 * 101.65040 * 205.96562 * 11 9 7 13 13 N 1.47842 * 104.80068 * 37.06823 * 12 11 9 14 14 C 1.47452 * 108.56567 * 335.90450 * 13 12 11 15 15 H 1.09002 * 109.88700 * 120.39575 * 14 13 12 16 16 C 1.52998 * 109.89016 * 241.58735 * 14 13 12 17 17 C 1.53004 * 109.47243 * 57.76398 * 16 14 13 18 18 C 1.53002 * 109.46773 * 180.02562 * 17 16 14 19 19 C 1.52995 * 109.47294 * 60.00750 * 18 17 16 20 20 C 1.53009 * 109.46952 * 299.99722 * 19 18 17 21 21 C 1.52994 * 109.47222 * 59.99743 * 20 19 18 22 22 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 23 23 H 1.09001 * 110.98919 * 324.05248 * 11 9 7 24 24 H 1.08997 * 110.99346 * 87.86666 * 11 9 7 25 25 H 1.09002 * 110.36973 * 155.89736 * 12 11 9 26 26 H 1.09001 * 110.37060 * 278.12148 * 12 11 9 27 27 H 1.00900 * 111.00245 * 98.17139 * 13 12 11 28 28 H 1.08992 * 109.47165 * 177.76889 * 16 14 13 29 29 H 1.08998 * 109.47122 * 300.00603 * 17 16 14 30 30 H 1.09001 * 109.46553 * 60.00553 * 17 16 14 31 31 H 1.08996 * 109.46909 * 299.99854 * 18 17 16 32 32 H 1.09007 * 109.46377 * 180.02562 * 18 17 16 33 33 H 1.08999 * 109.47071 * 179.97438 * 19 18 17 34 34 H 1.08998 * 109.47333 * 59.99165 * 19 18 17 35 35 H 1.09002 * 109.46490 * 300.00344 * 20 19 18 36 36 H 1.08993 * 109.47488 * 180.02562 * 20 19 18 37 37 H 1.09000 * 109.47537 * 180.02562 * 21 20 19 38 38 H 1.09005 * 109.47047 * 60.00093 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.0979 1.6993 -1.2159 5 1 1.2843 2.7464 0.0068 6 1 3.1081 1.6934 1.2091 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 1 0.6357 -2.5874 -0.9012 11 6 0.3814 -2.6306 1.2723 12 6 0.2726 -4.1687 1.4199 13 7 1.5947 -4.6826 1.0033 14 6 2.2242 -3.6911 0.1117 15 1 3.1701 -3.3569 0.5379 16 6 2.4605 -4.3080 -1.2683 17 6 1.1297 -4.7977 -1.8428 18 6 1.3663 -5.4152 -3.2226 19 6 2.3315 -6.5953 -3.0945 20 6 3.6624 -6.1057 -2.5199 21 6 3.4259 -5.4882 -1.1403 22 1 -0.4849 0.8401 0.0041 23 1 0.8841 -2.1903 2.1335 24 1 -0.6008 -2.1820 1.1241 25 1 0.0707 -4.4371 2.4569 26 1 -0.5101 -4.5579 0.7687 27 1 2.1786 -4.8705 1.8045 28 1 2.8892 -3.5580 -1.9329 29 1 0.7010 -5.5477 -1.1781 30 1 0.4419 -3.9570 -1.9336 31 1 1.7951 -4.6654 -3.8874 32 1 0.4180 -5.7637 -3.6320 33 1 2.4996 -7.0354 -4.0774 34 1 1.9026 -7.3450 -2.4296 35 1 4.0912 -5.3559 -3.1849 36 1 4.3502 -6.9462 -2.4291 37 1 4.3738 -5.1389 -0.7311 38 1 2.9969 -6.2379 -0.4753 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260345516.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:04 Heat of formation + Delta-G solvation = -33.181108 kcal Electronic energy + Delta-G solvation = -16322.997159 eV Core-core repulsion = 13970.445163 eV Total energy + Delta-G solvation = -2352.551996 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.90006 -36.47232 -32.67917 -30.97963 -30.25511 -28.83537 -26.91625 -24.21684 -22.18507 -21.82574 -19.98750 -19.24280 -18.32212 -16.66196 -15.25016 -14.79270 -14.55402 -13.97740 -13.73662 -13.60493 -13.07228 -12.50262 -12.04434 -11.94689 -11.73268 -11.54137 -11.17190 -10.95964 -10.76043 -10.55528 -10.48188 -10.46786 -10.38199 -9.84934 -9.73628 -9.66106 -9.36393 -8.96903 -8.70870 -8.35643 -7.55012 -6.01247 -4.03802 3.30827 3.35753 3.38243 4.43113 5.13591 5.17934 5.22791 5.28336 5.32831 5.73122 5.82025 5.91450 6.00764 6.03627 6.04797 6.07856 6.13188 6.35432 6.36856 6.40670 6.53072 6.55384 6.61857 6.66622 6.78241 6.88045 6.93234 6.97934 7.18944 7.25071 7.32970 7.67203 7.72812 7.92604 8.03889 8.20919 8.46268 8.98354 9.59889 11.08096 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.030537 B = 0.008612 C = 0.007788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.696457 B = 3250.433737 C = 3594.223107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.513 4.513 8 H 0.053 0.947 9 C 0.041 3.959 10 H 0.041 0.959 11 C -0.127 4.127 12 C 0.041 3.959 13 N -0.682 5.682 14 C 0.081 3.919 15 H 0.048 0.952 16 C -0.061 4.061 17 C -0.106 4.106 18 C -0.120 4.120 19 C -0.114 4.114 20 C -0.118 4.118 21 C -0.108 4.108 22 H 0.260 0.740 23 H 0.045 0.955 24 H 0.070 0.930 25 H 0.043 0.957 26 H 0.061 0.939 27 H 0.322 0.678 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.050 0.950 37 H 0.047 0.953 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.139 -9.979 -2.131 10.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.552 4.552 8 H 0.071 0.929 9 C 0.022 3.978 10 H 0.059 0.941 11 C -0.167 4.167 12 C -0.088 4.088 13 N -0.309 5.309 14 C -0.028 4.028 15 H 0.066 0.934 16 C -0.080 4.080 17 C -0.144 4.144 18 C -0.158 4.158 19 C -0.152 4.152 20 C -0.156 4.156 21 C -0.146 4.146 22 H 0.069 0.931 23 H 0.064 0.936 24 H 0.089 0.911 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.135 0.865 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.732 -10.286 -2.661 10.970 hybrid contribution 0.710 1.769 0.692 2.028 sum 3.442 -8.517 -1.969 9.395 Atomic orbital electron populations 1.69956 1.05841 1.26480 1.50426 1.24959 0.94825 0.98928 0.95127 0.86721 0.79651 0.83419 0.78574 1.20270 1.21342 1.20415 1.21101 0.92613 0.90536 1.50937 0.92874 1.19891 0.92393 0.91216 0.94277 0.94063 1.23008 1.01893 0.91989 0.99787 1.22913 0.91927 0.96397 0.97575 1.61701 1.04406 1.45080 1.19740 1.22348 0.97627 0.91060 0.91768 0.93388 1.20986 0.94905 0.95640 0.96464 1.21515 0.97838 1.00467 0.94552 1.21572 0.98286 0.97344 0.98579 1.21488 0.96060 0.97983 0.99650 1.21536 0.96684 0.99578 0.97779 1.21527 0.98648 0.98534 0.95891 0.93071 0.93636 0.91144 0.93837 0.92050 0.86460 0.91914 0.91461 0.91752 0.92620 0.93007 0.93234 0.92354 0.92622 0.93122 0.93398 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.42 12.12 55.43 0.67 -24.74 16 2 C 0.06 1.75 5.33 -17.82 -0.09 1.66 16 3 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -13.96 8.50 -34.44 -0.29 -14.25 16 8 H 0.05 1.44 7.57 -52.49 -0.40 1.04 16 9 C 0.04 1.01 2.20 -89.95 -0.20 0.81 16 10 H 0.04 1.10 5.77 -51.93 -0.30 0.80 16 11 C -0.13 -2.96 5.75 -24.59 -0.14 -3.10 16 12 C 0.04 0.78 7.57 -2.30 -0.02 0.76 16 13 N -0.68 -12.41 5.54 -103.81 -0.58 -12.99 16 14 C 0.08 1.66 2.67 -66.72 -0.18 1.48 16 15 H 0.05 1.03 7.66 -51.93 -0.40 0.63 16 16 C -0.06 -1.11 2.08 -90.62 -0.19 -1.30 16 17 C -0.11 -1.88 4.78 -26.73 -0.13 -2.01 16 18 C -0.12 -1.80 5.92 -26.73 -0.16 -1.96 16 19 C -0.11 -1.53 5.92 -26.73 -0.16 -1.69 16 20 C -0.12 -1.62 5.92 -26.73 -0.16 -1.78 16 21 C -0.11 -1.69 5.07 -26.73 -0.14 -1.83 16 22 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 23 H 0.04 1.10 8.04 -51.93 -0.42 0.69 16 24 H 0.07 1.78 7.54 -51.93 -0.39 1.38 16 25 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.32 5.37 8.91 -39.29 -0.35 5.02 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.07 1.21 7.56 -51.93 -0.39 0.82 16 30 H 0.06 1.29 6.09 -51.93 -0.32 0.97 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 1.08 7.69 -51.93 -0.40 0.68 16 LS Contribution 286.79 15.07 4.32 4.32 Total: -1.00 -27.21 286.79 -9.18 -36.39 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -6.72 Total: 3.91 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: -1.85 Total: -23.21 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.10 Total: -37.73 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -27.21 -9.18 -36.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260345516.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.209 kcal (2) G-P(sol) polarization free energy of solvation -27.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds