Wall clock time and date at job start Mon Mar 30 2020 03:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27725 * 3 2 1 5 5 H 1.48495 * 109.47159 * 0.27736 * 3 2 1 6 6 H 1.48505 * 109.47290 * 120.27720 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 H 1.09002 * 110.63028 * 61.64728 * 9 7 2 11 11 C 1.55147 * 110.70534 * 298.54951 * 9 7 2 12 12 C 1.54906 * 101.65040 * 205.96562 * 11 9 7 13 13 N 1.47842 * 104.80068 * 37.06823 * 12 11 9 14 14 C 1.47452 * 108.56567 * 335.90450 * 13 12 11 15 15 H 1.09002 * 109.88700 * 120.39575 * 14 13 12 16 16 C 1.52998 * 109.89016 * 241.58735 * 14 13 12 17 17 C 1.53004 * 109.47243 * 57.76398 * 16 14 13 18 18 C 1.53002 * 109.46773 * 180.02562 * 17 16 14 19 19 C 1.52995 * 109.47294 * 60.00750 * 18 17 16 20 20 C 1.53009 * 109.46952 * 299.99722 * 19 18 17 21 21 C 1.52994 * 109.47222 * 59.99743 * 20 19 18 22 22 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 23 23 H 1.09001 * 110.98919 * 324.05248 * 11 9 7 24 24 H 1.08997 * 110.99346 * 87.86666 * 11 9 7 25 25 H 1.09002 * 110.36973 * 155.89736 * 12 11 9 26 26 H 1.09001 * 110.37060 * 278.12148 * 12 11 9 27 27 H 1.00900 * 111.00245 * 98.17139 * 13 12 11 28 28 H 1.08992 * 109.47165 * 177.76889 * 16 14 13 29 29 H 1.08998 * 109.47122 * 300.00603 * 17 16 14 30 30 H 1.09001 * 109.46553 * 60.00553 * 17 16 14 31 31 H 1.08996 * 109.46909 * 299.99854 * 18 17 16 32 32 H 1.09007 * 109.46377 * 180.02562 * 18 17 16 33 33 H 1.08999 * 109.47071 * 179.97438 * 19 18 17 34 34 H 1.08998 * 109.47333 * 59.99165 * 19 18 17 35 35 H 1.09002 * 109.46490 * 300.00344 * 20 19 18 36 36 H 1.08993 * 109.47488 * 180.02562 * 20 19 18 37 37 H 1.09000 * 109.47537 * 180.02562 * 21 20 19 38 38 H 1.09005 * 109.47047 * 60.00093 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.0979 1.6993 -1.2159 5 1 1.2843 2.7464 0.0068 6 1 3.1081 1.6934 1.2091 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 1 0.6357 -2.5874 -0.9012 11 6 0.3814 -2.6306 1.2723 12 6 0.2726 -4.1687 1.4199 13 7 1.5947 -4.6826 1.0033 14 6 2.2242 -3.6911 0.1117 15 1 3.1701 -3.3569 0.5379 16 6 2.4605 -4.3080 -1.2683 17 6 1.1297 -4.7977 -1.8428 18 6 1.3663 -5.4152 -3.2226 19 6 2.3315 -6.5953 -3.0945 20 6 3.6624 -6.1057 -2.5199 21 6 3.4259 -5.4882 -1.1403 22 1 -0.4849 0.8401 0.0041 23 1 0.8841 -2.1903 2.1335 24 1 -0.6008 -2.1820 1.1241 25 1 0.0707 -4.4371 2.4569 26 1 -0.5101 -4.5579 0.7687 27 1 2.1786 -4.8705 1.8045 28 1 2.8892 -3.5580 -1.9329 29 1 0.7010 -5.5477 -1.1781 30 1 0.4419 -3.9570 -1.9336 31 1 1.7951 -4.6654 -3.8874 32 1 0.4180 -5.7637 -3.6320 33 1 2.4996 -7.0354 -4.0774 34 1 1.9026 -7.3450 -2.4296 35 1 4.0912 -5.3559 -3.1849 36 1 4.3502 -6.9462 -2.4291 37 1 4.3738 -5.1389 -0.7311 38 1 2.9969 -6.2379 -0.4753 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260345516.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:04 Heat of formation + Delta-G solvation = -48.266109 kcal Electronic energy + Delta-G solvation = -16323.651294 eV Core-core repulsion = 13970.445163 eV Total energy + Delta-G solvation = -2353.206131 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.43720 -37.93343 -34.73938 -32.39629 -31.54827 -30.69787 -28.55221 -26.14465 -23.51538 -23.26952 -21.62574 -20.71790 -19.91095 -18.63645 -16.88332 -16.56265 -16.28918 -15.57692 -14.93385 -14.88066 -14.67557 -14.24142 -13.61513 -13.53099 -13.19398 -12.99057 -12.89227 -12.82553 -12.59467 -12.28350 -12.11492 -11.79180 -11.71278 -11.51793 -11.36872 -11.11172 -10.89810 -10.75937 -10.51106 -10.38070 -9.15170 -8.14321 -6.23635 1.37626 1.38511 1.46140 2.40074 3.16246 3.55579 3.94979 3.98079 4.08168 4.30982 4.41536 4.52659 4.57584 4.65471 4.75372 4.78123 4.81965 4.83531 4.93919 4.95680 5.00554 5.18292 5.24498 5.30813 5.38014 5.43801 5.48520 5.52597 5.55075 5.60230 5.70739 5.81814 5.82582 6.00122 6.15671 6.38993 6.71623 6.89355 7.43269 8.93953 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.030537 B = 0.008612 C = 0.007788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.696457 B = 3250.433737 C = 3594.223107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.014 3.986 3 Si 0.950 3.050 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.531 4.531 8 H 0.048 0.952 9 C 0.034 3.966 10 H 0.013 0.987 11 C -0.123 4.123 12 C 0.054 3.946 13 N -0.666 5.666 14 C 0.091 3.909 15 H 0.037 0.963 16 C -0.059 4.059 17 C -0.099 4.099 18 C -0.119 4.119 19 C -0.110 4.110 20 C -0.116 4.116 21 C -0.101 4.101 22 H 0.259 0.741 23 H 0.029 0.971 24 H 0.042 0.958 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.336 0.664 28 H 0.039 0.961 29 H 0.067 0.933 30 H 0.029 0.971 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.049 0.951 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.258 -11.614 -2.184 12.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.185 4.185 3 Si 0.775 3.225 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.570 4.570 8 H 0.066 0.934 9 C 0.015 3.985 10 H 0.031 0.969 11 C -0.163 4.163 12 C -0.075 4.075 13 N -0.294 5.294 14 C -0.019 4.019 15 H 0.055 0.945 16 C -0.078 4.078 17 C -0.136 4.136 18 C -0.156 4.156 19 C -0.147 4.147 20 C -0.154 4.154 21 C -0.138 4.138 22 H 0.068 0.932 23 H 0.048 0.952 24 H 0.061 0.939 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.151 0.849 28 H 0.057 0.943 29 H 0.086 0.914 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.068 0.932 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.865 -11.934 -2.708 12.833 hybrid contribution 0.336 2.305 0.713 2.436 sum 4.201 -9.628 -1.996 10.693 Atomic orbital electron populations 1.70087 1.07135 1.27125 1.51274 1.25721 0.95646 1.02247 0.94916 0.85743 0.78497 0.79431 0.78803 1.19700 1.20956 1.19714 1.21468 0.92657 0.92165 1.50674 0.93354 1.19847 0.93005 0.92070 0.93557 0.96932 1.22839 0.99806 0.95129 0.98489 1.22803 0.92382 0.92839 0.99472 1.61676 1.04150 1.43485 1.20112 1.22147 0.95964 0.90267 0.93542 0.94497 1.20923 0.96057 0.96287 0.94548 1.21398 0.96591 0.99198 0.96453 1.21557 0.99622 0.97966 0.96475 1.21468 0.95114 0.97038 1.01075 1.21536 0.97462 1.00201 0.96193 1.21443 0.97681 0.97151 0.97535 0.93173 0.95237 0.93948 0.90864 0.91881 0.84870 0.94279 0.91423 0.95229 0.93299 0.91832 0.91013 0.91750 0.92980 0.90718 0.93222 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.06 12.12 21.45 0.26 -53.80 16 2 C 0.01 0.77 5.33 84.66 0.45 1.22 16 3 Si 0.95 44.38 29.54 68.60 2.03 46.40 16 4 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 5 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 7 C -0.53 -29.73 8.50 25.60 0.22 -29.51 16 8 H 0.05 2.68 7.57 -2.91 -0.02 2.65 16 9 C 0.03 1.73 2.20 -10.36 -0.02 1.71 16 10 H 0.01 0.71 5.77 -2.39 -0.01 0.70 16 11 C -0.12 -5.86 5.75 31.98 0.18 -5.68 16 12 C 0.05 2.01 7.57 86.77 0.66 2.67 16 13 N -0.67 -23.29 5.54 -482.35 -2.67 -25.97 16 14 C 0.09 3.71 2.67 45.26 0.12 3.83 16 15 H 0.04 1.59 7.66 -2.39 -0.02 1.57 16 16 C -0.06 -2.15 2.08 -10.79 -0.02 -2.18 16 17 C -0.10 -3.49 4.78 30.60 0.15 -3.35 16 18 C -0.12 -3.40 5.92 30.59 0.18 -3.22 16 19 C -0.11 -2.59 5.92 30.60 0.18 -2.41 16 20 C -0.12 -2.85 5.92 30.60 0.18 -2.67 16 21 C -0.10 -2.94 5.07 30.59 0.16 -2.78 16 22 H 0.26 14.63 8.31 -92.71 -0.77 13.85 16 23 H 0.03 1.45 8.04 -2.39 -0.02 1.43 16 24 H 0.04 2.22 7.54 -2.39 -0.02 2.20 16 25 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.34 10.40 8.91 -89.69 -0.80 9.60 16 28 H 0.04 1.59 8.14 -2.39 -0.02 1.58 16 29 H 0.07 2.36 7.56 -2.39 -0.02 2.34 16 30 H 0.03 1.23 6.09 -2.39 -0.01 1.21 16 31 H 0.05 1.45 8.14 -2.39 -0.02 1.44 16 32 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.06 1.47 8.14 -2.39 -0.02 1.46 16 35 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.07 2.07 7.69 -2.38 -0.02 2.05 16 Total: -1.00 -59.65 286.79 2.26 -57.40 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.21 Total: 18.33 kcal Atomic # 6 Polarization: -44.79 SS G_CDS: 2.43 Total: -42.36 kcal Atomic # 7 Polarization: -77.35 SS G_CDS: -2.41 Total: -79.76 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -59.65 2.26 -57.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260345516.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.129 kcal (2) G-P(sol) polarization free energy of solvation -59.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds