Wall clock time and date at job start Mon Mar 30 2020 03:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99920 * 2 1 4 4 H 1.48500 * 109.46918 * 269.99384 * 3 2 1 5 5 H 1.48494 * 109.46889 * 29.99632 * 3 2 1 6 6 H 1.48504 * 109.47054 * 149.99811 * 3 2 1 7 7 C 1.37882 * 120.00026 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99822 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00122 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.35186 * 63.49028 * 9 7 2 11 11 C 1.54598 * 110.30658 * 301.34452 * 9 7 2 12 12 C 1.54938 * 102.91762 * 219.12756 * 11 9 7 13 13 N 1.48525 * 103.23113 * 37.41652 * 12 11 9 14 14 C 1.47907 * 105.81808 * 320.79147 * 13 12 11 15 15 H 1.08999 * 110.07846 * 265.88542 * 14 13 12 16 16 C 1.53008 * 109.91589 * 144.68431 * 14 13 12 17 17 C 1.52998 * 109.46642 * 311.20486 * 16 14 13 18 18 C 1.53008 * 109.46642 * 179.97438 * 17 16 14 19 19 C 1.52996 * 109.47185 * 300.00346 * 18 17 16 20 20 C 1.52998 * 109.47348 * 59.99622 * 19 18 17 21 21 C 1.52995 * 109.47300 * 300.00088 * 20 19 18 22 22 H 0.97000 * 120.00177 * 0.02562 * 1 2 3 23 23 H 1.09000 * 110.72411 * 337.48239 * 11 9 7 24 24 H 1.09001 * 110.72422 * 100.59194 * 11 9 7 25 25 H 1.09002 * 110.66334 * 155.84947 * 12 11 9 26 26 H 1.08998 * 110.66721 * 278.81083 * 12 11 9 27 27 H 1.00901 * 111.00105 * 200.27957 * 13 12 11 28 28 H 1.08995 * 109.46680 * 191.20388 * 16 14 13 29 29 H 1.09000 * 109.47330 * 299.99205 * 17 16 14 30 30 H 1.08995 * 109.47664 * 60.00504 * 17 16 14 31 31 H 1.09001 * 109.47226 * 179.97438 * 18 17 16 32 32 H 1.09005 * 109.46672 * 59.99830 * 18 17 16 33 33 H 1.09005 * 109.46894 * 299.99348 * 19 18 17 34 34 H 1.09003 * 109.46732 * 180.02562 * 19 18 17 35 35 H 1.09007 * 109.46963 * 179.97438 * 20 19 18 36 36 H 1.08995 * 109.47066 * 60.00729 * 20 19 18 37 37 H 1.09005 * 109.46852 * 300.00218 * 21 20 19 38 38 H 1.09001 * 109.47239 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6526 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6668 -2.5996 -0.9142 11 6 0.3292 -2.5865 1.2385 12 6 0.4613 -4.0702 1.6648 13 7 1.8924 -4.3720 1.4064 14 6 2.2285 -3.6806 0.1428 15 1 2.1118 -4.3626 -0.6994 16 6 3.6673 -3.1630 0.1986 17 6 3.8875 -2.4096 1.5119 18 6 5.3265 -1.8925 1.5680 19 6 6.2962 -3.0733 1.4885 20 6 6.0758 -3.8267 0.1753 21 6 4.6369 -4.3438 0.1192 22 1 -0.4850 0.8400 -0.0004 23 1 0.6821 -1.9250 2.0296 24 1 -0.7004 -2.3496 0.9702 25 1 0.2281 -4.1885 2.7230 26 1 -0.1841 -4.7041 1.0568 27 1 2.0434 -5.3664 1.3257 28 1 3.8440 -2.4901 -0.6404 29 1 3.1965 -1.5686 1.5687 30 1 3.7107 -3.0825 2.3510 31 1 5.4834 -1.3554 2.5035 32 1 5.5037 -1.2197 0.7289 33 1 6.1189 -3.7461 2.3276 34 1 7.3212 -2.7049 1.5289 35 1 6.7670 -4.6677 0.1185 36 1 6.2531 -3.1540 -0.6637 37 1 4.4597 -5.0166 0.9583 38 1 4.4800 -4.8809 -0.8162 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260345548.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:09 Heat of formation + Delta-G solvation = -11.079143 kcal Electronic energy + Delta-G solvation = -16709.795192 eV Core-core repulsion = 14358.201609 eV Total energy + Delta-G solvation = -2351.593583 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.01456 -36.31444 -32.74348 -31.01582 -30.14042 -28.88152 -26.55755 -24.42311 -21.82558 -21.73937 -20.19956 -18.92749 -18.38867 -16.25144 -15.64263 -14.61414 -14.39418 -13.83616 -13.69224 -13.46684 -13.18849 -12.36266 -12.11373 -11.73297 -11.45606 -11.29654 -11.18184 -10.91132 -10.68825 -10.60848 -10.43228 -10.21249 -9.92249 -9.75463 -9.47458 -9.45333 -9.33106 -8.87204 -8.38565 -8.27540 -7.60962 -5.95596 -3.92433 3.33534 3.41139 3.44241 4.48697 5.14163 5.30164 5.34728 5.40854 5.41246 5.84454 5.96543 6.02454 6.07631 6.15591 6.16310 6.18441 6.28400 6.29679 6.43128 6.49067 6.52273 6.64858 6.74752 6.75867 6.95664 7.05852 7.11966 7.24375 7.27105 7.53964 7.55620 7.71800 7.81194 8.01184 8.09695 8.20364 8.52155 9.04965 9.66936 11.14570 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.022591 B = 0.013185 C = 0.009284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.155311 B = 2123.073532 C = 3015.195662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.881 3.119 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.271 1.271 7 C -0.513 4.513 8 H 0.087 0.913 9 C 0.044 3.956 10 H 0.021 0.979 11 C -0.086 4.086 12 C 0.029 3.971 13 N -0.661 5.661 14 C 0.079 3.921 15 H 0.020 0.980 16 C -0.052 4.052 17 C -0.119 4.119 18 C -0.122 4.122 19 C -0.115 4.115 20 C -0.115 4.115 21 C -0.117 4.117 22 H 0.257 0.743 23 H 0.061 0.939 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.021 0.979 27 H 0.313 0.687 28 H 0.074 0.926 29 H 0.110 0.890 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.047 0.953 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.867 -6.703 1.875 9.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.709 3.291 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.196 1.196 7 C -0.551 4.551 8 H 0.105 0.895 9 C 0.025 3.975 10 H 0.039 0.961 11 C -0.124 4.124 12 C -0.100 4.100 13 N -0.288 5.288 14 C -0.031 4.031 15 H 0.038 0.962 16 C -0.071 4.071 17 C -0.156 4.156 18 C -0.160 4.160 19 C -0.152 4.152 20 C -0.152 4.152 21 C -0.155 4.155 22 H 0.067 0.933 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.039 0.961 27 H 0.127 0.873 28 H 0.092 0.908 29 H 0.128 0.872 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.003 -6.080 2.339 9.564 hybrid contribution -0.096 0.301 -0.753 0.817 sum 6.907 -5.778 1.586 9.144 Atomic orbital electron populations 1.69992 1.05930 1.26191 1.50942 1.25008 0.94720 0.98889 0.95570 0.86755 0.80189 0.84141 0.78006 1.20942 1.21513 1.19570 1.21771 0.94290 0.89711 1.49342 0.89518 1.19478 0.91874 0.92155 0.93952 0.96062 1.22324 0.99934 0.90801 0.99362 1.23144 0.88576 0.99383 0.98924 1.63009 1.18901 1.12206 1.34674 1.22312 0.96741 0.95822 0.88191 0.96211 1.20979 0.92186 0.94802 0.99124 1.21983 0.94589 1.02155 0.96827 1.21606 0.97136 0.96744 1.00471 1.21511 0.98236 0.97955 0.97526 1.21484 0.97013 0.98950 0.97801 1.21685 0.94670 0.98885 1.00227 0.93332 0.92056 0.92593 0.92185 0.96114 0.87318 0.90766 0.87224 0.92264 0.93328 0.92921 0.92605 0.93564 0.93432 0.92565 0.92451 0.93711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.19 12.22 55.43 0.68 -24.51 16 2 C 0.06 1.59 5.31 -17.82 -0.09 1.50 16 3 Si 0.88 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.51 -13.19 5.61 -34.44 -0.19 -13.39 16 8 H 0.09 2.15 3.66 -52.48 -0.19 1.96 16 9 C 0.04 1.07 2.90 -90.42 -0.26 0.81 16 10 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 11 C -0.09 -1.99 5.43 -24.87 -0.13 -2.13 16 12 C 0.03 0.56 7.55 -1.90 -0.01 0.54 16 13 N -0.66 -12.29 5.70 -103.13 -0.59 -12.88 16 14 C 0.08 1.60 2.95 -66.64 -0.20 1.41 16 15 H 0.02 0.40 8.12 -51.93 -0.42 -0.03 16 16 C -0.05 -1.00 1.51 -90.62 -0.14 -1.13 16 17 C -0.12 -2.33 4.00 -26.73 -0.11 -2.44 16 18 C -0.12 -2.11 5.92 -26.73 -0.16 -2.27 16 19 C -0.11 -1.71 5.92 -26.73 -0.16 -1.87 16 20 C -0.11 -1.69 5.92 -26.73 -0.16 -1.85 16 21 C -0.12 -1.89 5.13 -26.73 -0.14 -2.03 16 22 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 23 H 0.06 1.55 7.85 -51.93 -0.41 1.14 16 24 H 0.06 1.38 7.96 -51.93 -0.41 0.97 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.31 5.11 8.92 -39.29 -0.35 4.76 16 28 H 0.07 1.57 6.47 -51.93 -0.34 1.23 16 29 H 0.11 2.53 4.95 -51.93 -0.26 2.27 16 30 H 0.06 1.18 7.36 -51.93 -0.38 0.80 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.92 7.98 -51.93 -0.41 0.50 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 279.94 15.07 4.22 4.22 Total: -1.00 -26.46 279.94 -9.00 -35.47 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -6.54 Total: 4.60 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: -1.75 Total: -22.84 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.09 Total: -37.39 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -26.46 -9.00 -35.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260345548.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.388 kcal (2) G-P(sol) polarization free energy of solvation -26.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds