Wall clock time and date at job start Mon Mar 30 2020 03:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99920 * 2 1 4 4 H 1.48500 * 109.46918 * 269.99384 * 3 2 1 5 5 H 1.48494 * 109.46889 * 29.99632 * 3 2 1 6 6 H 1.48504 * 109.47054 * 149.99811 * 3 2 1 7 7 C 1.37882 * 120.00026 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99822 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00122 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.35186 * 63.49028 * 9 7 2 11 11 C 1.54598 * 110.30658 * 301.34452 * 9 7 2 12 12 C 1.54938 * 102.91762 * 219.12756 * 11 9 7 13 13 N 1.48525 * 103.23113 * 37.41652 * 12 11 9 14 14 C 1.47907 * 105.81808 * 320.79147 * 13 12 11 15 15 H 1.08999 * 110.07846 * 265.88542 * 14 13 12 16 16 C 1.53008 * 109.91589 * 144.68431 * 14 13 12 17 17 C 1.52998 * 109.46642 * 311.20486 * 16 14 13 18 18 C 1.53008 * 109.46642 * 179.97438 * 17 16 14 19 19 C 1.52996 * 109.47185 * 300.00346 * 18 17 16 20 20 C 1.52998 * 109.47348 * 59.99622 * 19 18 17 21 21 C 1.52995 * 109.47300 * 300.00088 * 20 19 18 22 22 H 0.97000 * 120.00177 * 0.02562 * 1 2 3 23 23 H 1.09000 * 110.72411 * 337.48239 * 11 9 7 24 24 H 1.09001 * 110.72422 * 100.59194 * 11 9 7 25 25 H 1.09002 * 110.66334 * 155.84947 * 12 11 9 26 26 H 1.08998 * 110.66721 * 278.81083 * 12 11 9 27 27 H 1.00901 * 111.00105 * 200.27957 * 13 12 11 28 28 H 1.08995 * 109.46680 * 191.20388 * 16 14 13 29 29 H 1.09000 * 109.47330 * 299.99205 * 17 16 14 30 30 H 1.08995 * 109.47664 * 60.00504 * 17 16 14 31 31 H 1.09001 * 109.47226 * 179.97438 * 18 17 16 32 32 H 1.09005 * 109.46672 * 59.99830 * 18 17 16 33 33 H 1.09005 * 109.46894 * 299.99348 * 19 18 17 34 34 H 1.09003 * 109.46732 * 180.02562 * 19 18 17 35 35 H 1.09007 * 109.46963 * 179.97438 * 20 19 18 36 36 H 1.08995 * 109.47066 * 60.00729 * 20 19 18 37 37 H 1.09005 * 109.46852 * 300.00218 * 21 20 19 38 38 H 1.09001 * 109.47239 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6526 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6668 -2.5996 -0.9142 11 6 0.3292 -2.5865 1.2385 12 6 0.4613 -4.0702 1.6648 13 7 1.8924 -4.3720 1.4064 14 6 2.2285 -3.6806 0.1428 15 1 2.1118 -4.3626 -0.6994 16 6 3.6673 -3.1630 0.1986 17 6 3.8875 -2.4096 1.5119 18 6 5.3265 -1.8925 1.5680 19 6 6.2962 -3.0733 1.4885 20 6 6.0758 -3.8267 0.1753 21 6 4.6369 -4.3438 0.1192 22 1 -0.4850 0.8400 -0.0004 23 1 0.6821 -1.9250 2.0296 24 1 -0.7004 -2.3496 0.9702 25 1 0.2281 -4.1885 2.7230 26 1 -0.1841 -4.7041 1.0568 27 1 2.0434 -5.3664 1.3257 28 1 3.8440 -2.4901 -0.6404 29 1 3.1965 -1.5686 1.5687 30 1 3.7107 -3.0825 2.3510 31 1 5.4834 -1.3554 2.5035 32 1 5.5037 -1.2197 0.7289 33 1 6.1189 -3.7461 2.3276 34 1 7.3212 -2.7049 1.5289 35 1 6.7670 -4.6677 0.1185 36 1 6.2531 -3.1540 -0.6637 37 1 4.4597 -5.0166 0.9583 38 1 4.4800 -4.8809 -0.8162 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260345548.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:09 Heat of formation + Delta-G solvation = -25.832439 kcal Electronic energy + Delta-G solvation = -16710.434943 eV Core-core repulsion = 14358.201609 eV Total energy + Delta-G solvation = -2352.233334 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.60838 -37.80611 -34.71792 -32.51402 -31.59346 -30.66714 -28.16662 -26.35179 -23.25341 -23.20726 -21.82640 -20.57472 -19.99293 -18.13080 -17.29458 -16.53271 -15.93590 -15.41083 -15.12970 -14.84286 -14.65946 -14.15884 -13.79637 -13.47297 -12.92453 -12.80996 -12.75105 -12.63782 -12.48201 -12.35055 -11.92307 -11.69762 -11.58250 -11.44337 -11.26053 -11.02933 -10.83694 -10.55426 -10.40757 -10.12279 -9.16831 -8.03623 -6.03400 1.40895 1.43570 1.52079 2.48328 3.28206 3.57814 4.03624 4.05135 4.14308 4.33177 4.47345 4.50426 4.62212 4.63263 4.73059 4.83768 4.90742 4.94450 4.98407 5.02977 5.12317 5.19440 5.28938 5.36261 5.41364 5.50107 5.55235 5.56825 5.67578 5.70998 5.82602 5.91079 6.01810 6.13951 6.26918 6.48882 6.78176 7.00598 7.57840 9.06642 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.022591 B = 0.013185 C = 0.009284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.155311 B = 2123.073532 C = 3015.195662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.936 3.064 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.262 1.262 7 C -0.508 4.508 8 H 0.095 0.905 9 C 0.033 3.967 10 H -0.014 1.014 11 C -0.079 4.079 12 C 0.041 3.959 13 N -0.655 5.655 14 C 0.085 3.915 15 H 0.026 0.974 16 C -0.049 4.049 17 C -0.110 4.110 18 C -0.122 4.122 19 C -0.109 4.109 20 C -0.114 4.114 21 C -0.109 4.109 22 H 0.253 0.747 23 H 0.034 0.966 24 H 0.031 0.969 25 H 0.080 0.920 26 H 0.035 0.965 27 H 0.335 0.665 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.041 0.959 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.070 -8.288 2.436 12.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.763 3.237 4 H -0.207 1.207 5 H -0.219 1.219 6 H -0.186 1.186 7 C -0.546 4.546 8 H 0.112 0.888 9 C 0.014 3.986 10 H 0.004 0.996 11 C -0.117 4.117 12 C -0.088 4.088 13 N -0.284 5.284 14 C -0.025 4.025 15 H 0.044 0.956 16 C -0.068 4.068 17 C -0.147 4.147 18 C -0.160 4.160 19 C -0.147 4.147 20 C -0.151 4.151 21 C -0.147 4.147 22 H 0.062 0.938 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.098 0.902 26 H 0.054 0.946 27 H 0.150 0.850 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.227 -7.682 2.900 12.352 hybrid contribution -0.813 0.774 -0.934 1.460 sum 8.414 -6.908 1.966 11.063 Atomic orbital electron populations 1.70130 1.07242 1.26457 1.52941 1.25703 0.95382 1.01956 0.96053 0.85872 0.79307 0.80628 0.77919 1.20709 1.21893 1.18573 1.22142 0.94816 0.90370 1.47241 0.88788 1.19498 0.92681 0.93639 0.92733 0.99605 1.22080 0.98015 0.93514 0.98135 1.23024 0.89296 0.96222 1.00301 1.62943 1.18320 1.13690 1.33424 1.22158 0.96550 0.94470 0.89289 0.95586 1.20870 0.92279 0.95803 0.97820 1.21762 0.95385 1.00575 0.97015 1.21588 0.96251 0.97855 1.00294 1.21471 0.98430 0.96832 0.97934 1.21492 0.96370 0.99777 0.97483 1.21593 0.94707 0.97356 1.01047 0.93793 0.94721 0.95065 0.90198 0.94639 0.84977 0.93190 0.91265 0.92347 0.92855 0.94012 0.91881 0.91545 0.90760 0.93005 0.91651 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.52 12.22 21.45 0.26 -54.25 16 2 C 0.01 0.35 5.31 84.66 0.45 0.79 16 3 Si 0.94 44.02 29.54 68.60 2.03 46.05 16 4 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.51 -26.82 5.61 25.60 0.14 -26.68 16 8 H 0.09 4.76 3.66 -2.91 -0.01 4.75 16 9 C 0.03 1.66 2.90 -10.66 -0.03 1.63 16 10 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 11 C -0.08 -3.76 5.43 31.80 0.17 -3.59 16 12 C 0.04 1.51 7.55 86.65 0.65 2.16 16 13 N -0.65 -22.98 5.70 -480.20 -2.74 -25.72 16 14 C 0.08 3.39 2.95 45.06 0.13 3.52 16 15 H 0.03 1.01 8.12 -2.39 -0.02 0.99 16 16 C -0.05 -1.81 1.51 -10.79 -0.02 -1.83 16 17 C -0.11 -4.22 4.00 30.60 0.12 -4.10 16 18 C -0.12 -4.01 5.92 30.60 0.18 -3.83 16 19 C -0.11 -2.86 5.92 30.59 0.18 -2.68 16 20 C -0.11 -2.91 5.92 30.59 0.18 -2.73 16 21 C -0.11 -3.18 5.13 30.59 0.16 -3.03 16 22 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 23 H 0.03 1.80 7.85 -2.39 -0.02 1.78 16 24 H 0.03 1.60 7.96 -2.39 -0.02 1.58 16 25 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 26 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.33 9.73 8.92 -89.69 -0.80 8.93 16 28 H 0.05 2.09 6.47 -2.39 -0.02 2.08 16 29 H 0.07 3.23 4.95 -2.39 -0.01 3.21 16 30 H 0.06 2.23 7.36 -2.39 -0.02 2.21 16 31 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 33 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 34 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.06 1.82 7.98 -2.38 -0.02 1.80 16 38 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -58.38 279.94 2.10 -56.28 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.22 Total: 17.99 kcal Atomic # 6 Polarization: -42.67 SS G_CDS: 2.33 Total: -40.34 kcal Atomic # 7 Polarization: -77.50 SS G_CDS: -2.48 Total: -79.97 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -58.38 2.10 -56.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260345548.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.445 kcal (2) G-P(sol) polarization free energy of solvation -58.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds