Wall clock time and date at job start Mon Mar 30 2020 02:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 H 1.08998 * 110.63008 * 61.65199 * 9 7 2 11 11 C 1.55135 * 110.70708 * 298.54348 * 9 7 2 12 12 C 1.54906 * 101.65478 * 205.96455 * 11 9 7 13 13 N 1.47848 * 104.79306 * 37.07342 * 12 11 9 14 14 C 1.47443 * 108.56701 * 335.89965 * 13 12 11 15 15 H 1.09003 * 109.88188 * 120.39702 * 14 13 12 16 16 C 1.52997 * 109.88977 * 241.58474 * 14 13 12 17 17 C 1.52997 * 109.47454 * 292.77005 * 16 14 13 18 18 C 1.54269 * 110.03362 * 292.91053 * 17 16 14 19 19 C 1.54966 * 104.16192 * 217.13334 * 18 17 16 20 20 C 1.54889 * 102.77471 * 37.88550 * 19 18 17 21 21 C 1.53869 * 110.03460 * 175.69396 * 17 16 14 22 22 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 23 23 H 1.08999 * 110.99419 * 324.05956 * 11 9 7 24 24 H 1.09001 * 110.98846 * 87.87943 * 11 9 7 25 25 H 1.08994 * 110.37876 * 155.89782 * 12 11 9 26 26 H 1.09002 * 110.37684 * 278.24804 * 12 11 9 27 27 H 1.00904 * 110.99742 * 213.63811 * 13 12 11 28 28 H 1.08993 * 109.47286 * 52.77609 * 16 14 13 29 29 H 1.09007 * 109.46919 * 172.77024 * 16 14 13 30 30 H 1.09007 * 110.01388 * 54.29772 * 17 16 14 31 31 H 1.09000 * 110.48519 * 335.78555 * 18 17 16 32 32 H 1.09003 * 110.48529 * 98.42119 * 18 17 16 33 33 H 1.08996 * 110.71939 * 279.57653 * 19 18 17 34 34 H 1.08999 * 110.92301 * 156.29737 * 19 18 17 35 35 H 1.08999 * 110.48861 * 203.40272 * 20 19 18 36 36 H 1.09007 * 110.48449 * 80.76346 * 20 19 18 37 37 H 1.09006 * 110.03086 * 238.56779 * 21 17 16 38 38 H 1.08990 * 110.03280 * 359.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 1 0.6399 -2.5897 -0.8974 11 6 0.3758 -2.6272 1.2750 12 6 0.2662 -4.1649 1.4261 13 7 1.5903 -4.6798 1.0169 14 6 2.2236 -3.6907 0.1256 15 1 3.1676 -3.3554 0.5553 16 6 2.4664 -4.3113 -1.2516 17 6 3.5253 -5.4097 -1.1367 18 6 4.8924 -4.7905 -0.7796 19 6 5.9133 -5.6385 -1.5795 20 6 5.1705 -5.9005 -2.9132 21 6 3.7020 -6.1154 -2.4925 22 1 -0.4850 0.8401 0.0004 23 1 0.8744 -2.1846 2.1373 24 1 -0.6059 -2.1791 1.1211 25 1 0.0596 -4.4307 2.4628 26 1 -0.5121 -4.5562 0.7709 27 1 1.5046 -5.5755 0.5601 28 1 1.5369 -4.7404 -1.6258 29 1 2.8145 -3.5417 -1.9407 30 1 3.2322 -6.1322 -0.3750 31 1 4.9328 -3.7477 -1.0945 32 1 5.0811 -4.8742 0.2907 33 1 6.1240 -6.5756 -1.0643 34 1 6.8328 -5.0794 -1.7528 35 1 5.5628 -6.7937 -3.3993 36 1 5.2558 -5.0372 -3.5733 37 1 3.4955 -7.1807 -2.3887 38 1 3.0331 -5.6758 -3.2323 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260413072.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:11 Heat of formation + Delta-G solvation = -33.384632 kcal Electronic energy + Delta-G solvation = -15943.581520 eV Core-core repulsion = 13591.020698 eV Total energy + Delta-G solvation = -2352.560821 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.75017 -36.99547 -32.73033 -31.43214 -29.00919 -28.50662 -27.41765 -24.82770 -22.98481 -20.63471 -20.13926 -19.14243 -18.76611 -16.45902 -15.94791 -14.79646 -14.75640 -14.49593 -14.03752 -13.31094 -13.12254 -12.48286 -12.15832 -11.87492 -11.73371 -11.20062 -10.98192 -10.95781 -10.85344 -10.77594 -10.68513 -10.57860 -10.47793 -10.26043 -10.08930 -9.87886 -9.54878 -8.98363 -8.81110 -8.36633 -7.55134 -5.99938 -4.02150 3.31326 3.38234 3.41865 4.45207 4.81845 4.88348 4.97231 5.16985 5.33182 5.54771 5.65143 5.66189 5.81927 5.84929 5.92077 5.98719 6.03841 6.07150 6.20454 6.21102 6.29734 6.36548 6.42288 6.50404 6.57592 6.59103 6.73601 6.89732 6.98993 7.26805 7.30645 7.66712 7.69731 7.94698 8.03497 8.23504 8.46311 8.99259 9.61623 11.09820 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.026347 B = 0.008235 C = 0.006814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.466325 B = 3399.143240 C = 4108.403007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.508 4.508 8 H 0.056 0.944 9 C 0.039 3.961 10 H 0.027 0.973 11 C -0.103 4.103 12 C 0.037 3.963 13 N -0.684 5.684 14 C 0.078 3.922 15 H 0.077 0.923 16 C -0.120 4.120 17 C -0.089 4.089 18 C -0.116 4.116 19 C -0.126 4.126 20 C -0.124 4.124 21 C -0.122 4.122 22 H 0.259 0.741 23 H 0.054 0.946 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.024 0.976 27 H 0.319 0.681 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.080 -10.403 -2.954 12.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.546 4.546 8 H 0.074 0.926 9 C 0.020 3.980 10 H 0.045 0.955 11 C -0.142 4.142 12 C -0.092 4.092 13 N -0.313 5.313 14 C -0.030 4.030 15 H 0.095 0.905 16 C -0.159 4.159 17 C -0.108 4.108 18 C -0.154 4.154 19 C -0.163 4.163 20 C -0.161 4.161 21 C -0.160 4.160 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.075 0.925 26 H 0.043 0.957 27 H 0.135 0.865 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.263 -10.078 -2.353 12.097 hybrid contribution -0.196 0.837 -0.860 1.216 sum 6.067 -9.241 -3.214 11.513 Atomic orbital electron populations 1.69963 1.05904 1.26391 1.50717 1.24970 0.94824 0.99008 0.95148 0.86640 0.79972 0.83663 0.78019 1.20791 1.21297 1.19865 1.21082 0.92736 0.90255 1.50538 0.92564 1.19857 0.92344 0.91994 0.93832 0.95500 1.22589 1.01348 0.90323 0.99929 1.22934 0.89527 0.98342 0.98401 1.62146 1.20948 1.04953 1.43231 1.22490 0.99313 0.92242 0.88992 0.90546 1.22177 0.97247 0.97273 0.99200 1.21782 0.95680 0.97215 0.96123 1.22426 0.93709 0.99521 0.99736 1.22517 0.98020 0.99729 0.96082 1.22341 0.95570 1.00817 0.97409 1.22244 0.96436 0.99792 0.97519 0.93131 0.92704 0.91224 0.92466 0.95732 0.86545 0.93239 0.91209 0.91259 0.91175 0.91711 0.92057 0.92112 0.92439 0.91830 0.92534 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.68 12.11 55.43 0.67 -25.01 16 2 C 0.06 1.72 5.33 -17.82 -0.10 1.63 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -13.91 8.50 -34.44 -0.29 -14.20 16 8 H 0.06 1.53 7.58 -52.48 -0.40 1.13 16 9 C 0.04 0.97 2.39 -89.95 -0.22 0.76 16 10 H 0.03 0.73 7.86 -51.93 -0.41 0.32 16 11 C -0.10 -2.48 5.74 -24.60 -0.14 -2.62 16 12 C 0.04 0.74 7.57 -2.30 -0.02 0.72 16 13 N -0.68 -13.10 7.22 -103.81 -0.75 -13.85 16 14 C 0.08 1.62 2.97 -66.72 -0.20 1.43 16 15 H 0.08 1.70 6.87 -51.93 -0.36 1.34 16 16 C -0.12 -2.13 3.54 -26.73 -0.09 -2.23 16 17 C -0.09 -1.31 2.83 -89.50 -0.25 -1.56 16 18 C -0.12 -1.68 5.43 -25.03 -0.14 -1.82 16 19 C -0.13 -1.52 6.91 -24.70 -0.17 -1.69 16 20 C -0.12 -1.45 6.83 -25.07 -0.17 -1.62 16 21 C -0.12 -1.56 6.46 -25.62 -0.17 -1.72 16 22 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 23 H 0.05 1.39 8.04 -51.93 -0.42 0.97 16 24 H 0.07 1.78 7.53 -51.93 -0.39 1.39 16 25 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.32 5.41 7.16 -39.29 -0.28 5.12 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.07 1.33 8.02 -51.92 -0.42 0.91 16 30 H 0.07 1.01 7.01 -51.93 -0.36 0.65 16 31 H 0.07 1.11 7.77 -51.93 -0.40 0.71 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.76 8.14 -51.92 -0.42 0.33 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.81 7.67 -51.93 -0.40 0.42 16 LS Contribution 291.78 15.07 4.40 4.40 Total: -1.00 -27.83 291.78 -9.43 -37.26 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -6.77 Total: 3.74 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: -1.95 Total: -22.93 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: -0.08 Total: -38.86 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.83 -9.43 -37.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260413072.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.874 kcal (2) G-P(sol) polarization free energy of solvation -27.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds