Wall clock time and date at job start Mon Mar 30 2020 02:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 H 1.08998 * 110.63008 * 61.65199 * 9 7 2 11 11 C 1.55135 * 110.70708 * 298.54348 * 9 7 2 12 12 C 1.54906 * 101.65478 * 205.96455 * 11 9 7 13 13 N 1.47848 * 104.79306 * 37.07342 * 12 11 9 14 14 C 1.47443 * 108.56701 * 335.89965 * 13 12 11 15 15 H 1.09003 * 109.88188 * 120.39702 * 14 13 12 16 16 C 1.52997 * 109.88977 * 241.58474 * 14 13 12 17 17 C 1.52997 * 109.47454 * 292.77005 * 16 14 13 18 18 C 1.54269 * 110.03362 * 292.91053 * 17 16 14 19 19 C 1.54966 * 104.16192 * 217.13334 * 18 17 16 20 20 C 1.54889 * 102.77471 * 37.88550 * 19 18 17 21 21 C 1.53869 * 110.03460 * 175.69396 * 17 16 14 22 22 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 23 23 H 1.08999 * 110.99419 * 324.05956 * 11 9 7 24 24 H 1.09001 * 110.98846 * 87.87943 * 11 9 7 25 25 H 1.08994 * 110.37876 * 155.89782 * 12 11 9 26 26 H 1.09002 * 110.37684 * 278.24804 * 12 11 9 27 27 H 1.00904 * 110.99742 * 213.63811 * 13 12 11 28 28 H 1.08993 * 109.47286 * 52.77609 * 16 14 13 29 29 H 1.09007 * 109.46919 * 172.77024 * 16 14 13 30 30 H 1.09007 * 110.01388 * 54.29772 * 17 16 14 31 31 H 1.09000 * 110.48519 * 335.78555 * 18 17 16 32 32 H 1.09003 * 110.48529 * 98.42119 * 18 17 16 33 33 H 1.08996 * 110.71939 * 279.57653 * 19 18 17 34 34 H 1.08999 * 110.92301 * 156.29737 * 19 18 17 35 35 H 1.08999 * 110.48861 * 203.40272 * 20 19 18 36 36 H 1.09007 * 110.48449 * 80.76346 * 20 19 18 37 37 H 1.09006 * 110.03086 * 238.56779 * 21 17 16 38 38 H 1.08990 * 110.03280 * 359.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 1 0.6399 -2.5897 -0.8974 11 6 0.3758 -2.6272 1.2750 12 6 0.2662 -4.1649 1.4261 13 7 1.5903 -4.6798 1.0169 14 6 2.2236 -3.6907 0.1256 15 1 3.1676 -3.3554 0.5553 16 6 2.4664 -4.3113 -1.2516 17 6 3.5253 -5.4097 -1.1367 18 6 4.8924 -4.7905 -0.7796 19 6 5.9133 -5.6385 -1.5795 20 6 5.1705 -5.9005 -2.9132 21 6 3.7020 -6.1154 -2.4925 22 1 -0.4850 0.8401 0.0004 23 1 0.8744 -2.1846 2.1373 24 1 -0.6059 -2.1791 1.1211 25 1 0.0596 -4.4307 2.4628 26 1 -0.5121 -4.5562 0.7709 27 1 1.5046 -5.5755 0.5601 28 1 1.5369 -4.7404 -1.6258 29 1 2.8145 -3.5417 -1.9407 30 1 3.2322 -6.1322 -0.3750 31 1 4.9328 -3.7477 -1.0945 32 1 5.0811 -4.8742 0.2907 33 1 6.1240 -6.5756 -1.0643 34 1 6.8328 -5.0794 -1.7528 35 1 5.5628 -6.7937 -3.3993 36 1 5.2558 -5.0372 -3.5733 37 1 3.4955 -7.1807 -2.3887 38 1 3.0331 -5.6758 -3.2323 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260413072.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:10 Heat of formation + Delta-G solvation = -49.303102 kcal Electronic energy + Delta-G solvation = -15944.271796 eV Core-core repulsion = 13591.020698 eV Total energy + Delta-G solvation = -2353.251098 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.19890 -38.40392 -34.79697 -32.84160 -30.94496 -29.57504 -28.87998 -26.68016 -24.59321 -21.95007 -21.62934 -20.79062 -20.10565 -18.53776 -17.32338 -16.56351 -16.10674 -15.86152 -15.76599 -14.71510 -14.30357 -14.11442 -14.01445 -13.45763 -13.27437 -12.99997 -12.73650 -12.59702 -12.45948 -12.32301 -11.95316 -11.89663 -11.79209 -11.59389 -11.42978 -11.38983 -11.15211 -10.90004 -10.68089 -10.47954 -9.17696 -8.14537 -6.23613 1.38426 1.39496 1.49791 2.41335 3.16499 3.53646 3.74202 3.83330 3.89858 4.24464 4.32759 4.35713 4.48964 4.54280 4.64881 4.73600 4.77404 4.83082 4.88917 4.97297 4.99581 5.06313 5.10984 5.16043 5.22018 5.29734 5.38490 5.42648 5.51084 5.55467 5.62295 5.65349 5.73731 5.91585 6.16967 6.36771 6.73949 6.85034 7.43572 8.94524 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.026347 B = 0.008235 C = 0.006814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.466325 B = 3399.143240 C = 4108.403007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.013 3.987 3 Si 0.951 3.049 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.525 4.525 8 H 0.051 0.949 9 C 0.031 3.969 10 H -0.002 1.002 11 C -0.101 4.101 12 C 0.048 3.952 13 N -0.678 5.678 14 C 0.091 3.909 15 H 0.060 0.940 16 C -0.111 4.111 17 C -0.084 4.084 18 C -0.121 4.121 19 C -0.120 4.120 20 C -0.122 4.122 21 C -0.120 4.120 22 H 0.260 0.740 23 H 0.033 0.967 24 H 0.045 0.955 25 H 0.078 0.922 26 H 0.038 0.962 27 H 0.337 0.663 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.076 0.924 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.186 -11.930 -3.172 14.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.186 4.186 3 Si 0.777 3.223 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.564 4.564 8 H 0.069 0.931 9 C 0.012 3.988 10 H 0.016 0.984 11 C -0.140 4.140 12 C -0.081 4.081 13 N -0.308 5.308 14 C -0.018 4.018 15 H 0.078 0.922 16 C -0.149 4.149 17 C -0.102 4.102 18 C -0.158 4.158 19 C -0.157 4.157 20 C -0.160 4.160 21 C -0.158 4.158 22 H 0.069 0.931 23 H 0.052 0.948 24 H 0.064 0.936 25 H 0.097 0.903 26 H 0.057 0.943 27 H 0.155 0.845 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.377 -11.624 -2.576 14.006 hybrid contribution -0.572 1.330 -0.783 1.646 sum 6.805 -10.294 -3.359 12.789 Atomic orbital electron populations 1.70084 1.07199 1.27157 1.51465 1.25739 0.95662 1.02354 0.94851 0.85652 0.78822 0.79559 0.78256 1.20077 1.20878 1.19291 1.21416 0.92767 0.91793 1.50416 0.93061 1.19841 0.92998 0.93077 0.92918 0.98352 1.22407 0.99513 0.93464 0.98574 1.22835 0.90206 0.94945 1.00103 1.62072 1.20441 1.05317 1.43006 1.22187 0.97385 0.91361 0.90914 0.92231 1.22045 0.98511 0.97703 0.96688 1.21732 0.94487 0.96180 0.97809 1.22417 0.94754 0.98826 0.99841 1.22497 0.97517 0.99872 0.95816 1.22352 0.94787 1.01623 0.97227 1.22229 0.97141 1.00542 0.95874 0.93112 0.94788 0.93578 0.90340 0.94349 0.84536 0.92988 0.93193 0.90528 0.93411 0.92243 0.90596 0.91374 0.90239 0.92450 0.90620 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.32 12.11 21.45 0.26 -54.06 16 2 C 0.01 0.71 5.33 84.66 0.45 1.17 16 3 Si 0.95 44.52 29.54 68.60 2.03 46.55 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.53 -29.63 8.50 25.60 0.22 -29.41 16 8 H 0.05 2.86 7.58 -2.91 -0.02 2.84 16 9 C 0.03 1.59 2.39 -10.36 -0.02 1.56 16 10 H 0.00 -0.09 7.86 -2.39 -0.02 -0.11 16 11 C -0.10 -4.95 5.74 31.98 0.18 -4.77 16 12 C 0.05 1.86 7.57 86.77 0.66 2.52 16 13 N -0.68 -25.01 7.22 -482.36 -3.48 -28.49 16 14 C 0.09 3.78 2.97 45.26 0.13 3.91 16 15 H 0.06 2.70 6.87 -2.39 -0.02 2.68 16 16 C -0.11 -3.90 3.54 30.59 0.11 -3.79 16 17 C -0.08 -2.31 2.83 -10.07 -0.03 -2.34 16 18 C -0.12 -3.37 5.43 31.70 0.17 -3.20 16 19 C -0.12 -2.58 6.91 31.91 0.22 -2.36 16 20 C -0.12 -2.54 6.83 31.67 0.22 -2.32 16 21 C -0.12 -2.76 6.46 31.32 0.20 -2.56 16 22 H 0.26 14.62 8.31 -92.71 -0.77 13.84 16 23 H 0.03 1.76 8.04 -2.39 -0.02 1.74 16 24 H 0.05 2.43 7.53 -2.39 -0.02 2.42 16 25 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 26 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.34 10.56 7.16 -89.69 -0.64 9.92 16 28 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.05 1.94 8.02 -2.38 -0.02 1.92 16 30 H 0.08 2.03 7.01 -2.38 -0.02 2.01 16 31 H 0.05 1.53 7.77 -2.39 -0.02 1.51 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16 34 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.06 1.37 7.67 -2.39 -0.02 1.35 16 Total: -1.00 -60.46 291.78 1.68 -58.78 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.37 Total: 18.82 kcal Atomic # 6 Polarization: -44.11 SS G_CDS: 2.51 Total: -41.60 kcal Atomic # 7 Polarization: -79.33 SS G_CDS: -3.22 Total: -82.55 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -60.46 1.68 -58.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260413072.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.477 kcal (2) G-P(sol) polarization free energy of solvation -60.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds