Wall clock time and date at job start Mon Mar 30 2020 02:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99757 * 2 1 4 4 H 1.48501 * 109.47484 * 270.00231 * 3 2 1 5 5 H 1.48505 * 109.47078 * 30.00384 * 3 2 1 6 6 H 1.48503 * 109.47003 * 149.99840 * 3 2 1 7 7 C 1.37873 * 120.00142 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00106 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00345 * 359.97438 * 7 2 1 10 10 H 1.08997 * 110.76226 * 303.20262 * 9 7 2 11 11 C 1.55400 * 110.84252 * 66.46660 * 9 7 2 12 12 C 1.54906 * 101.74056 * 153.86630 * 11 9 7 13 13 N 1.47852 * 104.79490 * 323.01764 * 12 11 9 14 14 C 1.47445 * 108.56566 * 24.09808 * 13 12 11 15 15 H 1.09007 * 109.88288 * 239.44065 * 14 13 12 16 16 C 1.52997 * 109.88856 * 118.41854 * 14 13 12 17 17 C 1.53000 * 109.47060 * 66.73178 * 16 14 13 18 18 C 1.54268 * 110.03010 * 292.90312 * 17 16 14 19 19 C 1.54962 * 104.16016 * 217.13690 * 18 17 16 20 20 C 1.54891 * 102.77626 * 37.89151 * 19 18 17 21 21 C 1.53876 * 110.02883 * 175.68988 * 17 16 14 22 22 H 0.96998 * 120.00532 * 359.97438 * 1 2 3 23 23 H 1.08991 * 110.87440 * 35.77568 * 11 9 7 24 24 H 1.09000 * 111.05478 * 272.02980 * 11 9 7 25 25 H 1.09002 * 110.37335 * 204.19002 * 12 11 9 26 26 H 1.08994 * 110.37646 * 81.84404 * 12 11 9 27 27 H 1.00902 * 110.99675 * 261.82671 * 13 12 11 28 28 H 1.09002 * 109.47153 * 306.72859 * 16 14 13 29 29 H 1.09001 * 109.46832 * 186.73050 * 16 14 13 30 30 H 1.08995 * 110.01931 * 54.29515 * 17 16 14 31 31 H 1.09001 * 110.49106 * 335.78894 * 18 17 16 32 32 H 1.09005 * 110.48252 * 98.43414 * 18 17 16 33 33 H 1.08996 * 110.72203 * 279.57767 * 19 18 17 34 34 H 1.09000 * 110.76267 * 156.22272 * 19 18 17 35 35 H 1.09004 * 110.48670 * 203.40017 * 20 19 18 36 36 H 1.09002 * 110.48466 * 80.76335 * 20 19 18 37 37 H 1.08995 * 110.03269 * 238.56224 * 21 17 16 38 38 H 1.08997 * 110.03631 * 0.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.5749 -2.5550 0.8525 11 6 0.4720 -2.6878 -1.3318 12 6 0.3758 -4.2311 -1.4247 13 7 1.6656 -4.7224 -0.8946 14 6 2.2284 -3.6934 -0.0011 15 1 3.2033 -3.3747 -0.3704 16 6 2.3666 -4.2536 1.4159 17 6 3.4236 -5.3598 1.4261 18 6 2.9276 -6.5721 0.6112 19 6 3.4530 -7.7989 1.3987 20 6 3.2842 -7.3570 2.8736 21 6 3.6506 -5.8585 2.8640 22 1 -0.4851 0.8400 0.0004 23 1 1.0341 -2.2803 -2.1719 24 1 -0.5190 -2.2378 -1.2727 25 1 0.2488 -4.5416 -2.4618 26 1 -0.4495 -4.5974 -0.8143 27 1 2.3053 -4.9397 -1.6441 28 1 1.4096 -4.6625 1.7399 29 1 2.6692 -3.4557 2.0941 30 1 4.3585 -4.9864 1.0084 31 1 1.8384 -6.5838 0.5692 32 1 3.3489 -6.5541 -0.3940 33 1 4.5022 -7.9843 1.1687 34 1 2.8485 -8.6811 1.1882 35 1 3.9653 -7.9122 3.5186 36 1 2.2527 -7.4955 3.1976 37 1 4.6959 -5.7281 3.1438 38 1 3.0075 -5.3129 3.5544 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260413075.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:13 Heat of formation + Delta-G solvation = -30.114512 kcal Electronic energy + Delta-G solvation = -15970.349233 eV Core-core repulsion = 13617.930215 eV Total energy + Delta-G solvation = -2352.419018 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.59604 -36.90966 -32.68997 -31.38768 -29.03788 -28.28793 -27.30846 -24.92732 -22.96101 -20.36169 -19.99600 -18.94746 -18.84500 -16.84141 -15.56556 -14.91275 -14.61407 -14.51963 -13.90493 -13.11338 -12.96931 -12.51159 -12.32928 -11.87146 -11.46900 -11.13189 -11.00711 -10.89335 -10.81361 -10.68916 -10.63639 -10.34151 -10.31846 -10.07543 -9.94857 -9.81329 -9.60995 -8.99302 -8.84852 -8.39534 -7.53293 -6.02510 -4.05298 3.28956 3.36040 3.39158 4.42424 4.97022 5.04357 5.10473 5.13328 5.30991 5.62749 5.79863 5.85178 5.94563 5.97210 6.03603 6.11406 6.16733 6.20512 6.26595 6.31854 6.42330 6.49082 6.50576 6.65561 6.73877 6.82546 6.89361 6.95220 7.09390 7.17906 7.26985 7.62382 7.70030 7.90410 8.00028 8.19614 8.45200 8.97742 9.58861 11.07375 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.035785 B = 0.007320 C = 0.006468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.266213 B = 3824.346103 C = 4328.019085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.512 4.512 8 H 0.054 0.946 9 C 0.044 3.956 10 H 0.036 0.964 11 C -0.131 4.131 12 C 0.040 3.960 13 N -0.680 5.680 14 C 0.078 3.922 15 H 0.048 0.952 16 C -0.087 4.087 17 C -0.087 4.087 18 C -0.096 4.096 19 C -0.133 4.133 20 C -0.122 4.122 21 C -0.122 4.122 22 H 0.259 0.741 23 H 0.046 0.954 24 H 0.067 0.933 25 H 0.044 0.956 26 H 0.061 0.939 27 H 0.322 0.678 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.580 -11.318 1.462 12.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.551 4.551 8 H 0.072 0.928 9 C 0.025 3.975 10 H 0.054 0.946 11 C -0.170 4.170 12 C -0.089 4.089 13 N -0.307 5.307 14 C -0.031 4.031 15 H 0.066 0.934 16 C -0.125 4.125 17 C -0.106 4.106 18 C -0.134 4.134 19 C -0.170 4.170 20 C -0.160 4.160 21 C -0.160 4.160 22 H 0.069 0.931 23 H 0.064 0.936 24 H 0.085 0.915 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.136 0.864 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.141 -11.596 1.996 12.474 hybrid contribution 0.741 1.756 -0.690 2.027 sum 4.882 -9.840 1.306 11.062 Atomic orbital electron populations 1.69961 1.05899 1.26449 1.50412 1.24973 0.94817 0.99008 0.95068 0.86653 0.79957 0.83704 0.78045 1.20784 1.21233 1.19900 1.21117 0.92635 0.90440 1.50870 0.92751 1.19848 0.92686 0.91375 0.93640 0.94603 1.23083 1.01663 0.92227 1.00039 1.22904 0.92717 0.96306 0.96978 1.61939 1.05196 1.42769 1.20810 1.22343 0.98062 0.90786 0.91918 0.93412 1.21613 0.97629 0.96286 0.97001 1.21740 0.98511 0.96274 0.94042 1.22353 1.02037 0.91831 0.97168 1.22623 1.00203 0.98662 0.95555 1.22326 1.00763 0.96147 0.96765 1.22240 1.00471 0.95485 0.97799 0.93084 0.93553 0.91457 0.93731 0.92060 0.86425 0.92501 0.92289 0.92395 0.89941 0.92545 0.92544 0.92468 0.92753 0.92025 0.92756 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.64 12.51 55.43 0.69 -24.94 16 2 C 0.06 1.75 5.36 -17.82 -0.10 1.66 16 3 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.51 -13.98 8.47 -34.44 -0.29 -14.27 16 8 H 0.05 1.47 7.53 -52.48 -0.40 1.08 16 9 C 0.04 1.08 2.31 -89.81 -0.21 0.87 16 10 H 0.04 0.98 7.85 -51.93 -0.41 0.57 16 11 C -0.13 -3.03 5.96 -24.45 -0.15 -3.18 16 12 C 0.04 0.76 7.58 -2.29 -0.02 0.74 16 13 N -0.68 -12.19 4.31 -103.81 -0.45 -12.64 16 14 C 0.08 1.60 2.91 -66.73 -0.19 1.40 16 15 H 0.05 1.02 7.63 -51.93 -0.40 0.62 16 16 C -0.09 -1.61 4.02 -26.73 -0.11 -1.72 16 17 C -0.09 -1.35 2.93 -89.50 -0.26 -1.61 16 18 C -0.10 -1.38 4.73 -25.03 -0.12 -1.50 16 19 C -0.13 -1.64 6.91 -24.70 -0.17 -1.81 16 20 C -0.12 -1.50 6.83 -25.07 -0.17 -1.67 16 21 C -0.12 -1.68 6.46 -25.61 -0.17 -1.85 16 22 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 23 H 0.05 1.11 8.04 -51.93 -0.42 0.69 16 24 H 0.07 1.69 7.78 -51.93 -0.40 1.29 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 27 H 0.32 5.29 8.66 -39.29 -0.34 4.95 16 28 H 0.06 1.09 8.02 -51.93 -0.42 0.67 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.08 1.31 7.00 -51.93 -0.36 0.95 16 32 H 0.06 0.80 7.70 -51.93 -0.40 0.40 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.87 7.67 -51.93 -0.40 0.48 16 LS Contribution 291.62 15.07 4.39 4.39 Total: -1.00 -27.40 291.62 -9.21 -36.60 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -6.88 Total: 3.20 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: -1.95 Total: -22.93 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.25 Total: -37.58 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.40 -9.21 -36.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260413075.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.490 kcal (2) G-P(sol) polarization free energy of solvation -27.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds