Wall clock time and date at job start Mon Mar 30 2020 02:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99757 * 2 1 4 4 H 1.48501 * 109.47484 * 270.00231 * 3 2 1 5 5 H 1.48505 * 109.47078 * 30.00384 * 3 2 1 6 6 H 1.48503 * 109.47003 * 149.99840 * 3 2 1 7 7 C 1.37873 * 120.00142 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00106 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00345 * 359.97438 * 7 2 1 10 10 H 1.08997 * 110.76226 * 303.20262 * 9 7 2 11 11 C 1.55400 * 110.84252 * 66.46660 * 9 7 2 12 12 C 1.54906 * 101.74056 * 153.86630 * 11 9 7 13 13 N 1.47852 * 104.79490 * 323.01764 * 12 11 9 14 14 C 1.47445 * 108.56566 * 24.09808 * 13 12 11 15 15 H 1.09007 * 109.88288 * 239.44065 * 14 13 12 16 16 C 1.52997 * 109.88856 * 118.41854 * 14 13 12 17 17 C 1.53000 * 109.47060 * 66.73178 * 16 14 13 18 18 C 1.54268 * 110.03010 * 292.90312 * 17 16 14 19 19 C 1.54962 * 104.16016 * 217.13690 * 18 17 16 20 20 C 1.54891 * 102.77626 * 37.89151 * 19 18 17 21 21 C 1.53876 * 110.02883 * 175.68988 * 17 16 14 22 22 H 0.96998 * 120.00532 * 359.97438 * 1 2 3 23 23 H 1.08991 * 110.87440 * 35.77568 * 11 9 7 24 24 H 1.09000 * 111.05478 * 272.02980 * 11 9 7 25 25 H 1.09002 * 110.37335 * 204.19002 * 12 11 9 26 26 H 1.08994 * 110.37646 * 81.84404 * 12 11 9 27 27 H 1.00902 * 110.99675 * 261.82671 * 13 12 11 28 28 H 1.09002 * 109.47153 * 306.72859 * 16 14 13 29 29 H 1.09001 * 109.46832 * 186.73050 * 16 14 13 30 30 H 1.08995 * 110.01931 * 54.29515 * 17 16 14 31 31 H 1.09001 * 110.49106 * 335.78894 * 18 17 16 32 32 H 1.09005 * 110.48252 * 98.43414 * 18 17 16 33 33 H 1.08996 * 110.72203 * 279.57767 * 19 18 17 34 34 H 1.09000 * 110.76267 * 156.22272 * 19 18 17 35 35 H 1.09004 * 110.48670 * 203.40017 * 20 19 18 36 36 H 1.09002 * 110.48466 * 80.76335 * 20 19 18 37 37 H 1.08995 * 110.03269 * 238.56224 * 21 17 16 38 38 H 1.08997 * 110.03631 * 0.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.5749 -2.5550 0.8525 11 6 0.4720 -2.6878 -1.3318 12 6 0.3758 -4.2311 -1.4247 13 7 1.6656 -4.7224 -0.8946 14 6 2.2284 -3.6934 -0.0011 15 1 3.2033 -3.3747 -0.3704 16 6 2.3666 -4.2536 1.4159 17 6 3.4236 -5.3598 1.4261 18 6 2.9276 -6.5721 0.6112 19 6 3.4530 -7.7989 1.3987 20 6 3.2842 -7.3570 2.8736 21 6 3.6506 -5.8585 2.8640 22 1 -0.4851 0.8400 0.0004 23 1 1.0341 -2.2803 -2.1719 24 1 -0.5190 -2.2378 -1.2727 25 1 0.2488 -4.5416 -2.4618 26 1 -0.4495 -4.5974 -0.8143 27 1 2.3053 -4.9397 -1.6441 28 1 1.4096 -4.6625 1.7399 29 1 2.6692 -3.4557 2.0941 30 1 4.3585 -4.9864 1.0084 31 1 1.8384 -6.5838 0.5692 32 1 3.3489 -6.5541 -0.3940 33 1 4.5022 -7.9843 1.1687 34 1 2.8485 -8.6811 1.1882 35 1 3.9653 -7.9122 3.5186 36 1 2.2527 -7.4955 3.1976 37 1 4.6959 -5.7281 3.1438 38 1 3.0075 -5.3129 3.5544 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260413075.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:13 Heat of formation + Delta-G solvation = -44.603458 kcal Electronic energy + Delta-G solvation = -15970.977521 eV Core-core repulsion = 13617.930215 eV Total energy + Delta-G solvation = -2353.047306 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.06855 -38.31121 -34.75662 -32.80078 -30.89258 -29.47084 -28.74439 -26.74272 -24.61673 -21.83249 -21.27973 -20.59438 -20.24174 -18.77724 -17.08560 -16.52081 -16.37581 -15.71489 -15.60868 -14.57284 -14.33410 -14.07964 -13.83938 -13.54761 -13.16351 -13.01588 -12.71143 -12.48755 -12.44488 -12.17244 -11.86164 -11.80389 -11.56853 -11.50201 -11.41012 -11.21772 -11.09325 -10.90728 -10.69610 -10.50374 -9.11723 -8.16134 -6.25960 1.37393 1.38354 1.48569 2.39695 3.14985 3.54487 3.85368 3.96379 3.97228 4.24787 4.38251 4.50677 4.67287 4.69062 4.72612 4.77637 4.87145 4.90090 4.98158 5.01786 5.06518 5.14349 5.20079 5.22236 5.31948 5.38103 5.46809 5.52068 5.56806 5.61808 5.69586 5.77083 5.85120 5.93012 6.13286 6.36682 6.71677 6.87711 7.41739 8.93183 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.035785 B = 0.007320 C = 0.006468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.266213 B = 3824.346103 C = 4328.019085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.012 3.988 3 Si 0.952 3.048 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.529 4.529 8 H 0.051 0.949 9 C 0.035 3.965 10 H -0.001 1.001 11 C -0.126 4.126 12 C 0.053 3.947 13 N -0.663 5.663 14 C 0.090 3.910 15 H 0.040 0.960 16 C -0.080 4.080 17 C -0.084 4.084 18 C -0.093 4.093 19 C -0.126 4.126 20 C -0.120 4.120 21 C -0.123 4.123 22 H 0.260 0.740 23 H 0.034 0.966 24 H 0.039 0.961 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.337 0.663 28 H 0.046 0.954 29 H 0.038 0.962 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.932 -12.749 1.154 14.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.187 4.187 3 Si 0.778 3.222 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.567 4.567 8 H 0.070 0.930 9 C 0.015 3.985 10 H 0.017 0.983 11 C -0.166 4.166 12 C -0.077 4.077 13 N -0.291 5.291 14 C -0.020 4.020 15 H 0.059 0.941 16 C -0.118 4.118 17 C -0.103 4.103 18 C -0.131 4.131 19 C -0.164 4.164 20 C -0.157 4.157 21 C -0.161 4.161 22 H 0.069 0.931 23 H 0.053 0.947 24 H 0.058 0.942 25 H 0.095 0.905 26 H 0.080 0.920 27 H 0.152 0.848 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.507 -13.044 1.682 14.258 hybrid contribution 0.294 2.225 -0.587 2.320 sum 5.801 -10.819 1.095 12.325 Atomic orbital electron populations 1.70090 1.07302 1.27214 1.51322 1.25762 0.95635 1.02455 0.94804 0.85642 0.78810 0.79496 0.78265 1.20087 1.20918 1.19194 1.21465 0.92722 0.91917 1.50600 0.93049 1.19824 0.93114 0.92538 0.92981 0.98287 1.22924 0.99541 0.95480 0.98651 1.22810 0.93121 0.92731 0.98993 1.61915 1.05075 1.41037 1.21033 1.22110 0.96390 0.89873 0.93597 0.94141 1.21500 0.98335 0.96747 0.95217 1.21696 0.97089 0.95656 0.95812 1.22269 1.01065 0.92260 0.97493 1.22591 1.00987 0.97951 0.94868 1.22325 1.01170 0.94947 0.97288 1.22236 1.01029 0.96623 0.96193 0.93103 0.94722 0.94228 0.90538 0.92016 0.84778 0.93493 0.94307 0.92570 0.91466 0.92218 0.91431 0.91240 0.90847 0.92227 0.91639 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.53 12.51 21.45 0.27 -54.26 16 2 C 0.01 0.69 5.36 84.65 0.45 1.15 16 3 Si 0.95 44.22 29.54 68.60 2.03 46.25 16 4 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.53 -29.54 8.47 25.60 0.22 -29.32 16 8 H 0.05 2.83 7.53 -2.91 -0.02 2.81 16 9 C 0.03 1.77 2.31 -10.27 -0.02 1.75 16 10 H 0.00 -0.06 7.85 -2.39 -0.02 -0.08 16 11 C -0.13 -5.97 5.96 32.07 0.19 -5.78 16 12 C 0.05 1.94 7.58 86.77 0.66 2.59 16 13 N -0.66 -22.84 4.31 -482.35 -2.08 -24.92 16 14 C 0.09 3.68 2.91 45.26 0.13 3.82 16 15 H 0.04 1.72 7.63 -2.38 -0.02 1.70 16 16 C -0.08 -2.98 4.02 30.59 0.12 -2.86 16 17 C -0.08 -2.50 2.93 -10.07 -0.03 -2.53 16 18 C -0.09 -2.47 4.73 31.70 0.15 -2.32 16 19 C -0.13 -2.72 6.91 31.91 0.22 -2.50 16 20 C -0.12 -2.62 6.83 31.67 0.22 -2.40 16 21 C -0.12 -3.18 6.46 31.32 0.20 -2.98 16 22 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 23 H 0.03 1.67 8.04 -2.39 -0.02 1.66 16 24 H 0.04 2.05 7.78 -2.39 -0.02 2.03 16 25 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.34 10.22 8.66 -89.69 -0.78 9.44 16 28 H 0.05 1.83 8.02 -2.39 -0.02 1.81 16 29 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 31 H 0.07 2.01 7.00 -2.39 -0.02 1.99 16 32 H 0.06 1.53 7.70 -2.38 -0.02 1.51 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.05 1.45 7.67 -2.39 -0.02 1.43 16 Total: -1.00 -59.72 291.62 2.95 -56.77 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.23 Total: 17.54 kcal Atomic # 6 Polarization: -43.89 SS G_CDS: 2.51 Total: -41.38 kcal Atomic # 7 Polarization: -77.37 SS G_CDS: -1.81 Total: -79.18 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -59.72 2.95 -56.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260413075.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.168 kcal (2) G-P(sol) polarization free energy of solvation -59.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds