Wall clock time and date at job start Mon Mar 30 2020 02:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00069 * 2 1 4 4 H 1.48506 * 109.46913 * 270.00003 * 3 2 1 5 5 H 1.48499 * 109.47371 * 29.99893 * 3 2 1 6 6 H 1.48498 * 109.47181 * 150.00092 * 3 2 1 7 7 C 1.37874 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00326 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99664 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.35611 * 57.85528 * 9 7 2 11 11 C 1.54600 * 110.31107 * 295.71613 * 9 7 2 12 12 C 1.54940 * 102.92157 * 219.12840 * 11 9 7 13 13 N 1.48535 * 103.22505 * 37.41310 * 12 11 9 14 14 C 1.47897 * 105.82061 * 320.78939 * 13 12 11 15 15 H 1.08996 * 109.91875 * 265.78086 * 14 13 12 16 16 C 1.53004 * 109.91473 * 144.68330 * 14 13 12 17 17 C 1.53004 * 109.46634 * 66.45860 * 16 14 13 18 18 C 1.54894 * 110.75410 * 175.00220 * 17 16 14 19 19 C 1.54266 * 104.31305 * 156.31914 * 18 17 16 20 20 C 1.53869 * 106.60031 * 336.32486 * 19 18 17 21 21 C 1.54266 * 106.59800 * 359.97438 * 20 19 18 22 22 H 0.97002 * 119.99552 * 0.02562 * 1 2 3 23 23 H 1.08994 * 110.72653 * 100.76525 * 11 9 7 24 24 H 1.09000 * 110.71980 * 337.48699 * 11 9 7 25 25 H 1.08996 * 110.66560 * 278.97845 * 12 11 9 26 26 H 1.09005 * 110.66483 * 155.84729 * 12 11 9 27 27 H 1.00900 * 110.99913 * 81.30891 * 13 12 11 28 28 H 1.08993 * 109.47124 * 306.46006 * 16 14 13 29 29 H 1.08998 * 109.47152 * 186.45391 * 16 14 13 30 30 H 1.08993 * 110.82117 * 51.65872 * 17 16 14 31 31 H 1.09002 * 110.48891 * 37.57340 * 18 17 16 32 32 H 1.08998 * 110.48494 * 275.06427 * 18 17 16 33 33 H 1.09001 * 110.03084 * 95.60669 * 19 18 17 34 34 H 1.08995 * 110.03255 * 217.03136 * 19 18 17 35 35 H 1.08999 * 110.04012 * 119.28327 * 20 19 18 36 36 H 1.09003 * 110.03070 * 240.71854 * 20 19 18 37 37 H 1.09005 * 110.48526 * 142.29451 * 21 20 19 38 38 H 1.09007 * 110.48724 * 264.79935 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.5909 -2.5558 -0.8650 11 6 0.4373 -2.6490 1.3065 12 6 0.6020 -4.1515 1.6468 13 7 2.0054 -4.4373 1.2532 14 6 2.2344 -3.6841 0.0012 15 1 2.0463 -4.3271 -0.8586 16 6 3.6738 -3.1669 -0.0401 17 6 4.6382 -4.3504 -0.1409 18 6 6.0966 -3.8571 -0.3106 19 6 6.9579 -5.0287 0.2045 20 6 6.0693 -5.8386 1.1647 21 6 4.6992 -5.1305 1.2001 22 1 -0.4849 0.8401 -0.0004 23 1 -0.6113 -2.4043 1.1379 24 1 0.8576 -2.0263 2.0963 25 1 -0.0920 -4.7564 1.0632 26 1 0.4593 -4.3222 2.7139 27 1 2.6494 -4.1461 1.9734 28 1 3.8836 -2.6036 0.8691 29 1 3.8022 -2.5187 -0.9069 30 1 4.3561 -5.0114 -0.9603 31 1 6.2695 -2.9638 0.2896 32 1 6.3122 -3.6578 -1.3603 33 1 7.2737 -5.6550 -0.6299 34 1 7.8296 -4.6461 0.7354 35 1 5.9538 -6.8579 0.7965 36 1 6.5097 -5.8490 2.1617 37 1 3.8929 -5.8623 1.2520 38 1 4.6458 -4.4449 2.0458 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260413085.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:17 Heat of formation + Delta-G solvation = -22.181906 kcal Electronic energy + Delta-G solvation = -16143.629480 eV Core-core repulsion = 13791.554445 eV Total energy + Delta-G solvation = -2352.075035 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.74923 -36.94257 -32.64278 -31.54759 -29.00052 -28.28771 -27.28278 -24.42547 -23.38384 -20.46530 -19.86796 -19.62732 -18.82563 -16.06688 -15.49523 -14.90470 -14.60705 -14.34065 -13.73529 -13.59712 -12.98765 -12.77077 -12.58817 -11.65792 -11.37005 -11.27996 -11.06169 -10.94937 -10.89258 -10.71866 -10.56846 -10.25832 -10.14503 -10.03825 -9.94865 -9.71098 -9.55216 -9.12916 -8.55212 -8.37713 -7.61857 -6.00426 -4.02516 3.29065 3.36438 3.38473 4.43605 4.95782 4.99990 5.03972 5.23322 5.33311 5.63197 5.73483 5.85973 5.91744 5.96029 5.99402 6.09081 6.16083 6.23405 6.26962 6.34890 6.41523 6.47384 6.50883 6.56654 6.70861 6.78294 6.88535 6.94876 7.13058 7.18376 7.31551 7.57140 7.65271 7.93108 8.05421 8.18641 8.47349 9.00857 9.62182 11.09753 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.027292 B = 0.009024 C = 0.007168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.710361 B = 3102.231996 C = 3905.338553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.885 3.115 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.519 4.519 8 H 0.071 0.929 9 C 0.026 3.974 10 H 0.028 0.972 11 C -0.123 4.123 12 C 0.030 3.970 13 N -0.673 5.673 14 C 0.077 3.923 15 H 0.058 0.942 16 C -0.096 4.096 17 C -0.091 4.091 18 C -0.123 4.123 19 C -0.124 4.124 20 C -0.127 4.127 21 C -0.115 4.115 22 H 0.258 0.742 23 H 0.056 0.944 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.052 0.948 27 H 0.327 0.673 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.080 0.920 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.472 -8.278 1.862 11.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.713 3.287 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.089 0.911 9 C 0.006 3.994 10 H 0.046 0.954 11 C -0.163 4.163 12 C -0.100 4.100 13 N -0.302 5.302 14 C -0.033 4.033 15 H 0.077 0.923 16 C -0.134 4.134 17 C -0.109 4.109 18 C -0.161 4.161 19 C -0.161 4.161 20 C -0.164 4.164 21 C -0.152 4.152 22 H 0.068 0.932 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.143 0.857 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.216 -8.833 1.565 12.164 hybrid contribution 0.379 2.045 0.296 2.101 sum 8.595 -6.788 1.860 11.109 Atomic orbital electron populations 1.69995 1.05944 1.26279 1.50608 1.25034 0.94761 0.99016 0.95254 0.86703 0.79923 0.83975 0.78052 1.20772 1.21423 1.19949 1.21548 0.93559 0.90134 1.50506 0.91063 1.19845 0.92937 0.92628 0.93963 0.95361 1.22959 1.00915 0.92655 0.99752 1.23168 0.91219 0.97306 0.98309 1.63195 1.03646 1.56946 1.06395 1.22362 0.95306 0.93815 0.91780 0.92342 1.21847 0.93390 0.95376 1.02749 1.22295 0.93926 0.97372 0.97308 1.22444 0.95594 0.97665 1.00375 1.22120 0.98074 0.97318 0.98620 1.22176 0.96634 0.98917 0.98704 1.22534 0.95997 0.99321 0.97376 0.93246 0.92523 0.93041 0.91920 0.92971 0.85670 0.91823 0.90805 0.91471 0.91843 0.92351 0.92576 0.92670 0.92534 0.92708 0.90106 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.61 12.62 55.43 0.70 -24.91 16 2 C 0.06 1.67 5.34 -17.82 -0.10 1.58 16 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -13.68 7.50 -34.44 -0.26 -13.94 16 8 H 0.07 1.81 4.70 -52.49 -0.25 1.56 16 9 C 0.03 0.64 2.87 -90.41 -0.26 0.38 16 10 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 11 C -0.12 -2.86 5.75 -24.87 -0.14 -3.00 16 12 C 0.03 0.56 7.55 -1.90 -0.01 0.55 16 13 N -0.67 -12.45 5.66 -103.13 -0.58 -13.03 16 14 C 0.08 1.56 3.39 -66.64 -0.23 1.34 16 15 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 16 C -0.10 -1.78 2.75 -26.73 -0.07 -1.86 16 17 C -0.09 -1.40 2.89 -88.42 -0.26 -1.65 16 18 C -0.12 -1.71 6.26 -25.07 -0.16 -1.87 16 19 C -0.12 -1.50 6.80 -25.62 -0.17 -1.68 16 20 C -0.13 -1.56 6.80 -25.62 -0.17 -1.73 16 21 C -0.11 -1.63 4.55 -24.87 -0.11 -1.74 16 22 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 23 H 0.06 1.40 8.12 -51.93 -0.42 0.98 16 24 H 0.05 1.27 7.86 -51.93 -0.41 0.86 16 25 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.33 5.83 6.48 -39.29 -0.25 5.58 16 28 H 0.06 1.26 7.03 -51.93 -0.37 0.89 16 29 H 0.07 1.48 6.93 -51.93 -0.36 1.12 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.06 0.91 8.05 -51.93 -0.42 0.49 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.08 1.21 7.17 -51.93 -0.37 0.83 16 38 H 0.06 0.86 7.22 -51.93 -0.38 0.48 16 LS Contribution 284.90 15.07 4.29 4.29 Total: -1.00 -27.07 284.90 -9.14 -36.21 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -6.58 Total: 4.92 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: -1.94 Total: -23.63 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.12 Total: -37.94 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -27.07 -9.14 -36.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260413085.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.028 kcal (2) G-P(sol) polarization free energy of solvation -27.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds