Wall clock time and date at job start Mon Mar 30 2020 02:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00069 * 2 1 4 4 H 1.48506 * 109.46913 * 270.00003 * 3 2 1 5 5 H 1.48499 * 109.47371 * 29.99893 * 3 2 1 6 6 H 1.48498 * 109.47181 * 150.00092 * 3 2 1 7 7 C 1.37874 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00326 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99664 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.35611 * 57.85528 * 9 7 2 11 11 C 1.54600 * 110.31107 * 295.71613 * 9 7 2 12 12 C 1.54940 * 102.92157 * 219.12840 * 11 9 7 13 13 N 1.48535 * 103.22505 * 37.41310 * 12 11 9 14 14 C 1.47897 * 105.82061 * 320.78939 * 13 12 11 15 15 H 1.08996 * 109.91875 * 265.78086 * 14 13 12 16 16 C 1.53004 * 109.91473 * 144.68330 * 14 13 12 17 17 C 1.53004 * 109.46634 * 66.45860 * 16 14 13 18 18 C 1.54894 * 110.75410 * 175.00220 * 17 16 14 19 19 C 1.54266 * 104.31305 * 156.31914 * 18 17 16 20 20 C 1.53869 * 106.60031 * 336.32486 * 19 18 17 21 21 C 1.54266 * 106.59800 * 359.97438 * 20 19 18 22 22 H 0.97002 * 119.99552 * 0.02562 * 1 2 3 23 23 H 1.08994 * 110.72653 * 100.76525 * 11 9 7 24 24 H 1.09000 * 110.71980 * 337.48699 * 11 9 7 25 25 H 1.08996 * 110.66560 * 278.97845 * 12 11 9 26 26 H 1.09005 * 110.66483 * 155.84729 * 12 11 9 27 27 H 1.00900 * 110.99913 * 81.30891 * 13 12 11 28 28 H 1.08993 * 109.47124 * 306.46006 * 16 14 13 29 29 H 1.08998 * 109.47152 * 186.45391 * 16 14 13 30 30 H 1.08993 * 110.82117 * 51.65872 * 17 16 14 31 31 H 1.09002 * 110.48891 * 37.57340 * 18 17 16 32 32 H 1.08998 * 110.48494 * 275.06427 * 18 17 16 33 33 H 1.09001 * 110.03084 * 95.60669 * 19 18 17 34 34 H 1.08995 * 110.03255 * 217.03136 * 19 18 17 35 35 H 1.08999 * 110.04012 * 119.28327 * 20 19 18 36 36 H 1.09003 * 110.03070 * 240.71854 * 20 19 18 37 37 H 1.09005 * 110.48526 * 142.29451 * 21 20 19 38 38 H 1.09007 * 110.48724 * 264.79935 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.5909 -2.5558 -0.8650 11 6 0.4373 -2.6490 1.3065 12 6 0.6020 -4.1515 1.6468 13 7 2.0054 -4.4373 1.2532 14 6 2.2344 -3.6841 0.0012 15 1 2.0463 -4.3271 -0.8586 16 6 3.6738 -3.1669 -0.0401 17 6 4.6382 -4.3504 -0.1409 18 6 6.0966 -3.8571 -0.3106 19 6 6.9579 -5.0287 0.2045 20 6 6.0693 -5.8386 1.1647 21 6 4.6992 -5.1305 1.2001 22 1 -0.4849 0.8401 -0.0004 23 1 -0.6113 -2.4043 1.1379 24 1 0.8576 -2.0263 2.0963 25 1 -0.0920 -4.7564 1.0632 26 1 0.4593 -4.3222 2.7139 27 1 2.6494 -4.1461 1.9734 28 1 3.8836 -2.6036 0.8691 29 1 3.8022 -2.5187 -0.9069 30 1 4.3561 -5.0114 -0.9603 31 1 6.2695 -2.9638 0.2896 32 1 6.3122 -3.6578 -1.3603 33 1 7.2737 -5.6550 -0.6299 34 1 7.8296 -4.6461 0.7354 35 1 5.9538 -6.8579 0.7965 36 1 6.5097 -5.8490 2.1617 37 1 3.8929 -5.8623 1.2520 38 1 4.6458 -4.4449 2.0458 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260413085.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:17 Heat of formation + Delta-G solvation = -36.858774 kcal Electronic energy + Delta-G solvation = -16144.265916 eV Core-core repulsion = 13791.554445 eV Total energy + Delta-G solvation = -2352.711471 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.26493 -38.29744 -34.67858 -32.99048 -30.82067 -29.45610 -28.69727 -26.35134 -24.92920 -22.11400 -21.12484 -20.86305 -20.53397 -17.91798 -16.94353 -16.58538 -16.12829 -15.96308 -15.26134 -15.07836 -14.56321 -14.12579 -14.02134 -13.34325 -13.20997 -12.90149 -12.73339 -12.58638 -12.41413 -11.98270 -11.93783 -11.77965 -11.56634 -11.53223 -11.28963 -11.13173 -11.11240 -10.79938 -10.51333 -10.47198 -9.27337 -8.11475 -6.18881 1.38282 1.39650 1.48594 2.42267 3.20715 3.59538 3.84372 3.91909 3.96366 4.27735 4.44334 4.47638 4.62566 4.65178 4.74743 4.82619 4.83759 4.88300 4.98261 4.99656 5.06980 5.11139 5.22187 5.26522 5.32662 5.35511 5.47730 5.51167 5.54829 5.66002 5.67840 5.69955 5.76796 5.89537 6.19005 6.35868 6.67405 6.94823 7.48981 8.98615 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.027292 B = 0.009024 C = 0.007168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.710361 B = 3102.231996 C = 3905.338553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.006 3.994 3 Si 0.947 3.053 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.264 1.264 7 C -0.524 4.524 8 H 0.080 0.920 9 C 0.016 3.984 10 H -0.012 1.012 11 C -0.117 4.117 12 C 0.041 3.959 13 N -0.656 5.656 14 C 0.086 3.914 15 H 0.057 0.943 16 C -0.085 4.085 17 C -0.088 4.088 18 C -0.123 4.123 19 C -0.120 4.120 20 C -0.123 4.123 21 C -0.112 4.112 22 H 0.256 0.744 23 H 0.030 0.970 24 H 0.032 0.968 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.335 0.665 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.495 -9.358 2.574 14.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.774 3.226 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.188 1.188 7 C -0.562 4.562 8 H 0.098 0.902 9 C -0.004 4.004 10 H 0.006 0.994 11 C -0.156 4.156 12 C -0.089 4.089 13 N -0.284 5.284 14 C -0.024 4.024 15 H 0.075 0.925 16 C -0.123 4.123 17 C -0.106 4.106 18 C -0.161 4.161 19 C -0.157 4.157 20 C -0.160 4.160 21 C -0.149 4.149 22 H 0.065 0.935 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.088 0.912 26 H 0.099 0.901 27 H 0.152 0.848 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.261 -9.926 2.281 14.458 hybrid contribution -0.293 2.371 0.046 2.390 sum 9.968 -7.555 2.327 12.722 Atomic orbital electron populations 1.70138 1.07427 1.26814 1.52155 1.25824 0.95514 1.02468 0.95366 0.85711 0.78948 0.79901 0.78075 1.20431 1.21571 1.18800 1.21957 0.94160 0.90968 1.49152 0.90234 1.19887 0.93445 0.94068 0.93015 0.99351 1.22777 0.98822 0.95557 0.98479 1.23124 0.91560 0.93951 1.00220 1.63175 1.03502 1.55876 1.05872 1.22188 0.95349 0.92202 0.92678 0.92511 1.21655 0.93091 0.96377 1.01177 1.22205 0.94084 0.96046 0.98275 1.22432 0.94707 0.98269 1.00696 1.22105 0.98010 0.96551 0.99061 1.22155 0.95236 0.99089 0.99570 1.22473 0.97295 0.99003 0.96165 0.93529 0.95081 0.94897 0.91240 0.90139 0.84823 0.93020 0.92727 0.91577 0.92520 0.92018 0.91473 0.91478 0.91619 0.91509 0.90677 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.88 12.62 21.45 0.27 -54.61 16 2 C 0.01 0.35 5.34 84.65 0.45 0.80 16 3 Si 0.95 43.87 29.54 68.60 2.03 45.89 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.52 -28.11 7.50 25.60 0.19 -27.91 16 8 H 0.08 4.06 4.70 -2.91 -0.01 4.04 16 9 C 0.02 0.79 2.87 -10.66 -0.03 0.76 16 10 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 11 C -0.12 -5.51 5.75 31.80 0.18 -5.33 16 12 C 0.04 1.52 7.55 86.65 0.65 2.17 16 13 N -0.66 -23.23 5.66 -480.20 -2.72 -25.94 16 14 C 0.09 3.47 3.39 45.06 0.15 3.62 16 15 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 16 C -0.09 -3.12 2.75 30.60 0.08 -3.04 16 17 C -0.09 -2.56 2.89 -9.37 -0.03 -2.58 16 18 C -0.12 -3.16 6.26 31.67 0.20 -2.97 16 19 C -0.12 -2.51 6.80 31.32 0.21 -2.30 16 20 C -0.12 -2.61 6.80 31.32 0.21 -2.40 16 21 C -0.11 -2.90 4.55 31.80 0.14 -2.76 16 22 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 23 H 0.03 1.58 8.12 -2.39 -0.02 1.56 16 24 H 0.03 1.64 7.86 -2.39 -0.02 1.62 16 25 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 26 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 27 H 0.33 11.26 6.48 -89.69 -0.58 10.68 16 28 H 0.05 2.01 7.03 -2.39 -0.02 1.99 16 29 H 0.05 2.19 6.93 -2.39 -0.02 2.18 16 30 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.06 1.52 8.05 -2.39 -0.02 1.50 16 32 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.07 2.04 7.17 -2.38 -0.02 2.03 16 38 H 0.05 1.46 7.22 -2.38 -0.02 1.45 16 Total: -1.00 -58.65 284.90 2.44 -56.20 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 0.44 Total: 20.40 kcal Atomic # 6 Polarization: -44.37 SS G_CDS: 2.43 Total: -41.94 kcal Atomic # 7 Polarization: -78.11 SS G_CDS: -2.45 Total: -80.55 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -58.65 2.44 -56.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260413085.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.343 kcal (2) G-P(sol) polarization free energy of solvation -58.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds