Wall clock time and date at job start Mon Mar 30 2020 03:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00052 * 2 1 4 4 H 1.48499 * 109.47560 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47081 * 300.00567 * 3 2 1 6 6 H 1.48503 * 109.46962 * 60.00322 * 3 2 1 7 7 C 1.37878 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00312 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00094 * 0.02562 * 7 2 1 10 10 H 1.09005 * 108.81397 * 301.52183 * 9 7 2 11 11 C 1.45872 * 108.84504 * 59.99498 * 9 7 2 12 12 C 1.54528 * 111.60873 * 182.35820 * 11 9 7 13 13 C 1.50593 * 108.83864 * 282.67094 * 12 11 9 14 14 C 1.53912 * 112.87797 * 91.84113 * 13 12 11 15 15 N 1.47938 * 113.33165 * 317.74846 * 14 13 12 16 16 C 1.46900 * 111.00261 * 192.18821 * 15 14 13 17 17 C 1.53782 * 113.61303 * 292.67727 * 16 15 14 18 18 C 1.53778 * 87.08175 * 220.01920 * 17 16 15 19 19 C 1.53782 * 87.08327 * 25.43302 * 18 17 16 20 20 C 1.44306 * 113.64635 * 318.14120 * 15 14 13 21 21 H 0.97000 * 120.00701 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.04669 * 302.88427 * 11 9 7 23 23 H 1.08994 * 109.04069 * 61.83074 * 11 9 7 24 24 H 1.08996 * 109.57220 * 42.55236 * 12 11 9 25 25 H 1.09000 * 109.56980 * 162.92210 * 12 11 9 26 26 H 1.09005 * 108.82819 * 330.96037 * 13 12 11 27 27 H 1.09001 * 108.72597 * 212.65454 * 13 12 11 28 28 H 1.08998 * 108.71751 * 196.75057 * 14 13 12 29 29 H 1.09001 * 108.70943 * 78.73827 * 14 13 12 30 30 H 1.08994 * 112.85060 * 63.98514 * 16 15 14 31 31 H 1.09002 * 113.61414 * 334.56767 * 17 16 15 32 32 H 1.08999 * 113.61465 * 105.46579 * 17 16 15 33 33 H 1.09000 * 113.61605 * 270.88317 * 18 17 16 34 34 H 1.09003 * 113.69398 * 139.99074 * 18 17 16 35 35 H 1.08998 * 113.61547 * 220.02496 * 19 18 17 36 36 H 1.08997 * 113.61513 * 89.11495 * 19 18 17 37 37 H 1.09002 * 109.69185 * 335.69331 * 20 15 14 38 38 H 1.08995 * 109.69857 * 215.11055 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 1 0.6078 -2.5345 0.8776 11 6 0.4181 -2.5613 -1.1976 12 6 -0.4297 -3.8527 -1.2341 13 6 0.4508 -5.0008 -1.6516 14 6 1.0852 -5.7339 -0.4562 15 7 1.5814 -4.8195 0.5955 16 6 2.4240 -5.5366 1.5619 17 6 1.6521 -6.5592 2.4124 18 6 2.5051 -6.0940 3.6044 19 6 2.6686 -4.7560 2.8642 20 6 2.2626 -3.6574 0.0779 21 1 -0.4851 0.8400 0.0004 22 1 -0.2476 -1.6984 -1.2126 23 1 1.0586 -2.5313 -2.0790 24 1 -0.8409 -4.0477 -0.2436 25 1 -1.2416 -3.7362 -1.9520 26 1 1.2462 -4.6194 -2.2919 27 1 -0.1477 -5.7113 -2.2219 28 1 1.9186 -6.3363 -0.8176 29 1 0.3405 -6.3988 -0.0186 30 1 3.3341 -5.9365 1.1151 31 1 0.5921 -6.3283 2.5176 32 1 1.8341 -7.5941 2.1227 33 1 3.4373 -6.6476 3.7167 34 1 1.9468 -6.0117 4.5369 35 1 3.6713 -4.3352 2.9391 36 1 1.8865 -4.0321 3.0929 37 1 2.6530 -3.8731 -0.9167 38 1 3.0816 -3.3848 0.7434 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260420122.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:00 Heat of formation + Delta-G solvation = 12.479852 kcal Electronic energy + Delta-G solvation = -16308.138641 eV Core-core repulsion = 13957.566652 eV Total energy + Delta-G solvation = -2350.571988 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.22428 -36.96170 -33.56142 -32.19117 -30.57157 -26.28604 -25.69607 -24.61596 -23.51849 -22.45428 -19.42597 -18.88511 -18.74240 -16.46978 -15.70362 -15.18893 -14.55105 -14.34734 -13.88151 -13.38871 -12.94762 -12.39755 -12.20413 -12.03568 -11.92541 -11.35221 -11.25526 -11.05125 -10.90839 -10.73960 -10.49148 -10.34738 -10.07574 -9.91835 -9.83883 -9.53352 -9.30846 -9.04979 -8.53326 -8.14975 -7.39612 -5.87986 -3.95587 3.33552 3.41585 3.45188 4.44308 4.59881 4.92421 5.01943 5.19725 5.24040 5.39287 5.51211 5.60608 5.79498 5.86391 5.90727 6.07985 6.14102 6.18689 6.24887 6.33205 6.35432 6.51183 6.54411 6.62554 6.70313 6.83720 6.88733 6.91173 7.19275 7.40655 7.79090 7.84482 7.88292 8.00564 8.35538 8.41503 8.63961 9.12147 9.68604 11.15602 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.027636 B = 0.009148 C = 0.007437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.940241 B = 3060.051051 C = 3764.250798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.887 3.113 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.510 4.510 8 H 0.051 0.949 9 C 0.054 3.946 10 H 0.035 0.965 11 C -0.104 4.104 12 C -0.114 4.114 13 C -0.114 4.114 14 C 0.071 3.929 15 N -0.531 5.531 16 C 0.059 3.941 17 C -0.128 4.128 18 C -0.144 4.144 19 C -0.124 4.124 20 C 0.073 3.927 21 H 0.258 0.742 22 H 0.096 0.904 23 H 0.023 0.977 24 H 0.062 0.938 25 H 0.038 0.962 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.016 0.984 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.095 0.905 37 H 0.021 0.979 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.335 -11.106 1.964 11.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.715 3.285 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.549 4.549 8 H 0.069 0.931 9 C 0.035 3.965 10 H 0.053 0.947 11 C -0.142 4.142 12 C -0.152 4.152 13 C -0.152 4.152 14 C -0.056 4.056 15 N -0.256 5.256 16 C -0.050 4.050 17 C -0.166 4.166 18 C -0.182 4.182 19 C -0.162 4.162 20 C -0.054 4.054 21 H 0.068 0.932 22 H 0.114 0.886 23 H 0.042 0.958 24 H 0.081 0.919 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.034 0.966 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.113 0.887 37 H 0.039 0.961 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.806 -10.809 2.177 11.173 hybrid contribution 1.247 0.614 -0.556 1.497 sum 3.053 -10.194 1.622 10.764 Atomic orbital electron populations 1.69851 1.05747 1.25964 1.51365 1.24927 0.94810 0.98826 0.95529 0.86623 0.80135 0.84264 0.77461 1.19963 1.21192 1.21149 1.21361 0.92787 0.90975 1.49774 0.93090 1.17568 0.93038 0.90201 0.95703 0.94686 1.20685 0.98818 0.96431 0.98227 1.21396 0.97359 0.96061 1.00374 1.21405 0.99225 0.98103 0.96474 1.22217 0.97519 0.94114 0.91799 1.61107 1.40158 1.07516 1.16847 1.23089 0.94331 0.95337 0.92237 1.22941 1.00125 0.97514 0.95993 1.22732 0.99822 0.98088 0.97557 1.22938 1.02083 0.96446 0.94698 1.22018 0.96976 0.90229 0.96195 0.93224 0.88627 0.95784 0.91911 0.94321 0.92796 0.93194 0.96606 0.92221 0.93140 0.89351 0.92568 0.90921 0.91531 0.92141 0.88694 0.96113 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.65 11.21 55.43 0.62 -25.03 16 2 C 0.06 1.66 5.27 -17.82 -0.09 1.56 16 3 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.51 -14.11 8.39 -34.44 -0.29 -14.40 16 8 H 0.05 1.40 7.68 -52.49 -0.40 1.00 16 9 C 0.05 1.36 1.75 -94.64 -0.17 1.19 16 10 H 0.04 0.99 8.08 -51.93 -0.42 0.57 16 11 C -0.10 -2.51 4.42 -29.30 -0.13 -2.64 16 12 C -0.11 -2.31 5.63 -27.13 -0.15 -2.46 16 13 C -0.11 -1.99 5.28 -27.46 -0.14 -2.14 16 14 C 0.07 1.19 5.14 -2.78 -0.01 1.18 16 15 N -0.53 -9.93 3.95 -225.69 -0.89 -10.83 16 16 C 0.06 0.94 3.01 -66.90 -0.20 0.74 16 17 C -0.13 -1.73 7.24 -25.92 -0.19 -1.92 16 18 C -0.14 -1.81 8.08 -25.92 -0.21 -2.02 16 19 C -0.12 -1.92 6.89 -25.92 -0.18 -2.10 16 20 C 0.07 1.57 4.56 -4.70 -0.02 1.55 16 21 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 22 H 0.10 2.61 5.72 -51.93 -0.30 2.32 16 23 H 0.02 0.58 7.59 -51.93 -0.39 0.18 16 24 H 0.06 1.33 7.78 -51.93 -0.40 0.92 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.98 6.66 -51.93 -0.35 0.64 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.02 0.25 8.02 -51.93 -0.42 -0.17 16 29 H 0.06 0.93 7.88 -51.93 -0.41 0.52 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 37 H 0.02 0.45 6.79 -51.93 -0.35 0.09 16 38 H 0.05 1.20 6.74 -51.93 -0.35 0.85 16 LS Contribution 286.21 15.07 4.31 4.31 Total: -1.00 -27.91 286.21 -9.50 -37.41 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -6.73 Total: -0.91 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: -1.79 Total: -21.46 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: -0.27 Total: -35.85 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -27.91 -9.50 -37.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260420122.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.889 kcal (2) G-P(sol) polarization free energy of solvation -27.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds