Wall clock time and date at job start Mon Mar 30 2020 03:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00052 * 2 1 4 4 H 1.48499 * 109.47560 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47081 * 300.00567 * 3 2 1 6 6 H 1.48503 * 109.46962 * 60.00322 * 3 2 1 7 7 C 1.37878 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00312 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00094 * 0.02562 * 7 2 1 10 10 H 1.09005 * 108.81397 * 301.52183 * 9 7 2 11 11 C 1.45872 * 108.84504 * 59.99498 * 9 7 2 12 12 C 1.54528 * 111.60873 * 182.35820 * 11 9 7 13 13 C 1.50593 * 108.83864 * 282.67094 * 12 11 9 14 14 C 1.53912 * 112.87797 * 91.84113 * 13 12 11 15 15 N 1.47938 * 113.33165 * 317.74846 * 14 13 12 16 16 C 1.46900 * 111.00261 * 192.18821 * 15 14 13 17 17 C 1.53782 * 113.61303 * 292.67727 * 16 15 14 18 18 C 1.53778 * 87.08175 * 220.01920 * 17 16 15 19 19 C 1.53782 * 87.08327 * 25.43302 * 18 17 16 20 20 C 1.44306 * 113.64635 * 318.14120 * 15 14 13 21 21 H 0.97000 * 120.00701 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.04669 * 302.88427 * 11 9 7 23 23 H 1.08994 * 109.04069 * 61.83074 * 11 9 7 24 24 H 1.08996 * 109.57220 * 42.55236 * 12 11 9 25 25 H 1.09000 * 109.56980 * 162.92210 * 12 11 9 26 26 H 1.09005 * 108.82819 * 330.96037 * 13 12 11 27 27 H 1.09001 * 108.72597 * 212.65454 * 13 12 11 28 28 H 1.08998 * 108.71751 * 196.75057 * 14 13 12 29 29 H 1.09001 * 108.70943 * 78.73827 * 14 13 12 30 30 H 1.08994 * 112.85060 * 63.98514 * 16 15 14 31 31 H 1.09002 * 113.61414 * 334.56767 * 17 16 15 32 32 H 1.08999 * 113.61465 * 105.46579 * 17 16 15 33 33 H 1.09000 * 113.61605 * 270.88317 * 18 17 16 34 34 H 1.09003 * 113.69398 * 139.99074 * 18 17 16 35 35 H 1.08998 * 113.61547 * 220.02496 * 19 18 17 36 36 H 1.08997 * 113.61513 * 89.11495 * 19 18 17 37 37 H 1.09002 * 109.69185 * 335.69331 * 20 15 14 38 38 H 1.08995 * 109.69857 * 215.11055 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 1 0.6078 -2.5345 0.8776 11 6 0.4181 -2.5613 -1.1976 12 6 -0.4297 -3.8527 -1.2341 13 6 0.4508 -5.0008 -1.6516 14 6 1.0852 -5.7339 -0.4562 15 7 1.5814 -4.8195 0.5955 16 6 2.4240 -5.5366 1.5619 17 6 1.6521 -6.5592 2.4124 18 6 2.5051 -6.0940 3.6044 19 6 2.6686 -4.7560 2.8642 20 6 2.2626 -3.6574 0.0779 21 1 -0.4851 0.8400 0.0004 22 1 -0.2476 -1.6984 -1.2126 23 1 1.0586 -2.5313 -2.0790 24 1 -0.8409 -4.0477 -0.2436 25 1 -1.2416 -3.7362 -1.9520 26 1 1.2462 -4.6194 -2.2919 27 1 -0.1477 -5.7113 -2.2219 28 1 1.9186 -6.3363 -0.8176 29 1 0.3405 -6.3988 -0.0186 30 1 3.3341 -5.9365 1.1151 31 1 0.5921 -6.3283 2.5176 32 1 1.8341 -7.5941 2.1227 33 1 3.4373 -6.6476 3.7167 34 1 1.9468 -6.0117 4.5369 35 1 3.6713 -4.3352 2.9391 36 1 1.8865 -4.0321 3.0929 37 1 2.6530 -3.8731 -0.9167 38 1 3.0816 -3.3848 0.7434 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260420122.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:00 Heat of formation + Delta-G solvation = -2.755016 kcal Electronic energy + Delta-G solvation = -16308.799274 eV Core-core repulsion = 13957.566652 eV Total energy + Delta-G solvation = -2351.232622 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.61247 -38.46711 -35.41220 -33.78343 -32.48590 -28.00950 -27.07867 -26.18058 -25.06011 -23.98283 -21.01649 -20.58413 -20.06477 -18.46675 -17.21149 -16.68956 -16.21486 -16.01033 -15.29710 -14.92808 -14.65069 -14.03904 -13.78003 -13.56718 -13.24069 -13.05819 -12.87025 -12.83321 -12.44218 -12.38166 -12.22196 -11.80276 -11.55265 -11.41032 -11.36592 -11.16137 -10.98113 -10.84824 -10.53235 -10.25941 -8.87899 -8.02240 -6.18480 1.39144 1.40732 1.51894 2.43912 3.17320 3.22089 3.73471 3.90136 4.01626 4.06230 4.11263 4.22816 4.45126 4.49435 4.56251 4.72951 4.82463 4.88468 4.92943 4.96851 4.99872 5.02677 5.11438 5.14175 5.20815 5.24548 5.35980 5.47249 5.58928 5.63206 5.67246 5.88051 6.07775 6.34443 6.43358 6.55388 6.64523 6.99894 7.49377 8.99458 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.027636 B = 0.009148 C = 0.007437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.940241 B = 3060.051051 C = 3764.250798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.011 3.989 3 Si 0.950 3.050 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.532 4.532 8 H 0.046 0.954 9 C 0.059 3.941 10 H -0.006 1.006 11 C -0.099 4.099 12 C -0.103 4.103 13 C -0.111 4.111 14 C 0.070 3.930 15 N -0.548 5.548 16 C 0.050 3.950 17 C -0.117 4.117 18 C -0.126 4.126 19 C -0.135 4.135 20 C 0.092 3.908 21 H 0.259 0.741 22 H 0.060 0.940 23 H 0.016 0.984 24 H 0.049 0.951 25 H 0.051 0.949 26 H 0.044 0.956 27 H 0.084 0.916 28 H 0.033 0.967 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.019 0.981 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.075 -12.910 1.936 13.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.187 4.187 3 Si 0.776 3.224 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.571 4.571 8 H 0.065 0.935 9 C 0.040 3.960 10 H 0.012 0.988 11 C -0.137 4.137 12 C -0.141 4.141 13 C -0.149 4.149 14 C -0.057 4.057 15 N -0.273 5.273 16 C -0.058 4.058 17 C -0.155 4.155 18 C -0.164 4.164 19 C -0.173 4.173 20 C -0.036 4.036 21 H 0.068 0.932 22 H 0.078 0.922 23 H 0.035 0.965 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.102 0.898 28 H 0.051 0.949 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.038 0.962 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.550 -12.631 2.152 13.064 hybrid contribution 0.996 1.193 -0.531 1.643 sum 3.546 -11.438 1.621 12.084 Atomic orbital electron populations 1.70004 1.07065 1.26726 1.51804 1.25695 0.95650 1.02180 0.95188 0.85626 0.79079 0.80099 0.77558 1.19305 1.20608 1.20728 1.21734 0.92821 0.92621 1.49937 0.93549 1.17476 0.93161 0.91132 0.94215 0.98759 1.20523 0.98381 0.97458 0.97341 1.21245 0.97550 0.95153 1.00177 1.21366 0.98838 0.97660 0.97035 1.22293 0.98451 0.93795 0.91165 1.60994 1.40647 1.07789 1.17881 1.23278 0.94905 0.96054 0.91561 1.22868 0.99287 0.97987 0.95380 1.22696 1.00740 0.95584 0.97385 1.22934 1.00905 0.97511 0.95980 1.21598 0.95522 0.90490 0.95977 0.93205 0.92168 0.96484 0.93213 0.93011 0.93698 0.89765 0.94886 0.90440 0.92190 0.90433 0.90146 0.88652 0.90583 0.92278 0.91809 0.96243 0.93689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.52 11.21 21.45 0.24 -54.28 16 2 C 0.01 0.62 5.27 84.66 0.45 1.06 16 3 Si 0.95 44.89 29.54 68.60 2.03 46.92 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 7 C -0.53 -30.40 8.39 25.60 0.21 -30.19 16 8 H 0.05 2.62 7.68 -2.91 -0.02 2.59 16 9 C 0.06 3.09 1.75 -13.40 -0.02 3.07 16 10 H -0.01 -0.34 8.08 -2.38 -0.02 -0.36 16 11 C -0.10 -4.94 4.42 28.93 0.13 -4.81 16 12 C -0.10 -4.15 5.63 30.33 0.17 -3.98 16 13 C -0.11 -3.65 5.28 30.12 0.16 -3.49 16 14 C 0.07 2.17 5.14 86.41 0.44 2.62 16 15 N -0.55 -20.11 3.95 -867.96 -3.43 -23.54 16 16 C 0.05 1.52 3.01 45.44 0.14 1.66 16 17 C -0.12 -2.86 7.24 31.12 0.23 -2.63 16 18 C -0.13 -2.85 8.08 31.12 0.25 -2.60 16 19 C -0.14 -4.14 6.89 31.12 0.21 -3.93 16 20 C 0.09 4.02 4.56 87.12 0.40 4.42 16 21 H 0.26 14.62 8.31 -92.71 -0.77 13.84 16 22 H 0.06 3.43 5.72 -2.39 -0.01 3.41 16 23 H 0.02 0.83 7.59 -2.39 -0.02 0.81 16 24 H 0.05 2.11 7.78 -2.39 -0.02 2.09 16 25 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.04 1.56 6.66 -2.38 -0.02 1.54 16 27 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.03 0.93 8.02 -2.39 -0.02 0.91 16 29 H 0.08 2.16 7.88 -2.39 -0.02 2.14 16 30 H 0.06 1.73 8.14 -2.39 -0.02 1.72 16 31 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.02 0.84 6.79 -2.39 -0.02 0.82 16 38 H 0.04 2.01 6.74 -2.39 -0.02 1.99 16 Total: -1.00 -61.85 286.21 2.60 -59.25 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 1.00 Total: 10.45 kcal Atomic # 6 Polarization: -41.56 SS G_CDS: 2.77 Total: -38.79 kcal Atomic # 7 Polarization: -74.64 SS G_CDS: -3.19 Total: -77.82 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -61.85 2.60 -59.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260420122.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.495 kcal (2) G-P(sol) polarization free energy of solvation -61.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds