Wall clock time and date at job start Mon Mar 30 2020 03:26:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86797 * 120.00315 * 2 1
4 4 H 1.48502 * 109.47349 * 179.72153 * 3 2 1
5 5 H 1.48508 * 109.46825 * 299.72045 * 3 2 1
6 6 H 1.48493 * 109.47186 * 59.71647 * 3 2 1
7 7 C 1.37882 * 119.99925 * 179.71700 * 2 1 3
8 8 H 1.07992 * 120.00043 * 175.49197 * 7 2 1
9 9 C 1.50700 * 119.99758 * 355.49125 * 7 2 1
10 10 H 1.09004 * 109.04697 * 36.19672 * 9 7 2
11 11 C 1.54506 * 109.05805 * 277.27278 * 9 7 2
12 12 C 1.50465 * 108.85343 * 162.26551 * 11 9 7
13 13 C 1.54294 * 113.03466 * 92.15826 * 12 11 9
14 14 C 1.54068 * 112.28558 * 318.30315 * 13 12 11
15 15 N 1.44276 * 111.98134 * 318.91566 * 14 13 12
16 16 C 1.46895 * 110.99980 * 219.31423 * 15 14 13
17 17 C 1.53782 * 113.61717 * 157.15039 * 16 15 14
18 18 C 1.53954 * 87.01937 * 220.04699 * 17 16 15
19 19 C 1.53773 * 87.11234 * 25.36009 * 18 17 16
20 20 C 1.45861 * 109.05824 * 155.18865 * 9 7 2
21 21 H 0.97002 * 119.99917 * 185.26160 * 1 2 3
22 22 H 1.08995 * 109.57746 * 282.07667 * 11 9 7
23 23 H 1.08999 * 109.57461 * 42.45982 * 11 9 7
24 24 H 1.08997 * 108.77435 * 331.23900 * 12 11 9
25 25 H 1.08999 * 108.77263 * 213.07699 * 12 11 9
26 26 H 1.08999 * 108.91811 * 197.58212 * 13 12 11
27 27 H 1.09002 * 108.91661 * 79.02410 * 13 12 11
28 28 H 1.08998 * 108.97768 * 198.27410 * 14 13 12
29 29 H 1.09001 * 108.98068 * 79.55438 * 14 13 12
30 30 H 1.09003 * 112.84773 * 288.34638 * 16 15 14
31 31 H 1.09001 * 113.61395 * 334.56847 * 17 16 15
32 32 H 1.09001 * 113.61406 * 105.46476 * 17 16 15
33 33 H 1.08998 * 113.53442 * 270.80713 * 18 17 16
34 34 H 1.08999 * 113.66374 * 139.93668 * 18 17 16
35 35 H 1.09000 * 113.61732 * 220.08562 * 19 18 17
36 36 H 1.09005 * 113.68835 * 89.20125 * 19 18 17
37 37 H 1.09002 * 108.79145 * 302.75848 * 20 9 7
38 38 H 1.09003 * 108.79323 * 60.97430 * 20 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7092 1.3463 0.0068
5 1 1.8956 2.3934 -1.2160
6 1 1.8854 2.3993 1.2090
7 6 2.0045 -1.1941 0.0059
8 1 3.0820 -1.1959 -0.0676
9 6 1.2545 -2.4966 0.1149
10 1 0.3170 -2.4144 -0.4352
11 6 0.9421 -2.7760 1.6021
12 6 -0.1514 -3.8062 1.6840
13 6 0.3851 -5.2497 1.7808
14 6 1.5780 -5.4941 0.8370
15 7 1.3832 -4.8744 -0.4513
16 6 1.8765 -5.7391 -1.5314
17 6 1.2350 -5.4450 -2.8978
18 6 1.1979 -6.9682 -3.1182
19 6 1.1841 -7.1111 -1.5872
20 6 2.0601 -3.5608 -0.4733
21 1 -0.4850 -0.8365 0.0770
22 1 1.8364 -3.1524 2.0986
23 1 0.6138 -1.8558 2.0854
24 1 -0.7782 -3.7239 0.7962
25 1 -0.7628 -3.5997 2.5624
26 1 -0.4163 -5.9425 1.5243
27 1 0.7008 -5.4413 2.8064
28 1 1.7060 -6.5676 0.6982
29 1 2.4803 -5.0870 1.2932
30 1 2.9645 -5.7975 -1.5633
31 1 0.2471 -4.9898 -2.8274
32 1 1.8963 -4.9191 -3.5864
33 1 2.1003 -7.3624 -3.5854
34 1 0.2841 -7.3187 -3.5978
35 1 1.8043 -7.9285 -1.2193
36 1 0.1828 -7.1127 -1.1565
37 1 2.2861 -3.2995 -1.5071
38 1 2.9963 -3.6388 0.0794
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260420125.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:26:02
Heat of formation + Delta-G solvation = -9.376476 kcal
Electronic energy + Delta-G solvation = -16299.087131 eV
Core-core repulsion = 13947.567381 eV
Total energy + Delta-G solvation = -2351.519750 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 223.163 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-40.83770 -38.56871 -35.54875 -33.99412 -32.50822 -28.07037 -26.91380 -26.15648
-25.21208 -24.13035 -21.52892 -20.58519 -20.12417 -18.82318 -17.26269 -16.64937
-16.27584 -15.70500 -15.49775 -15.06843 -14.99976 -14.21124 -13.92558 -13.72540
-13.29740 -13.22950 -12.77206 -12.64562 -12.56424 -12.40994 -11.96386 -11.90745
-11.71165 -11.49134 -11.37070 -11.13209 -11.04383 -11.02741 -10.44408 -10.34502
-9.17571 -8.58072 -6.28695 1.51000 1.60322 1.76164 2.56163 3.06875
3.23774 3.67035 3.80092 3.96704 3.97103 4.07804 4.09367 4.21715
4.40755 4.46921 4.55099 4.65579 4.78209 4.83269 4.84783 4.92215
4.96246 5.02562 5.05184 5.07178 5.09729 5.30222 5.36409 5.39887
5.53674 5.55364 5.63887 5.84525 6.01408 6.26208 6.36076 6.46082
6.71079 7.52632 8.81530
Molecular weight = 223.16amu
Principal moments of inertia in cm(-1)
A = 0.031822 B = 0.008353 C = 0.007219
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 879.693493 B = 3351.098150 C = 3877.718387
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.937 5.937
2 C -0.029 4.029
3 Si 1.115 2.885
4 H -0.274 1.274
5 H -0.280 1.280
6 H -0.280 1.280
7 C -0.610 4.610
8 H 0.039 0.961
9 C 0.035 3.965
10 H 0.002 0.998
11 C -0.092 4.092
12 C -0.102 4.102
13 C -0.097 4.097
14 C 0.056 3.944
15 N -0.528 5.528
16 C 0.042 3.958
17 C -0.135 4.135
18 C -0.124 4.124
19 C -0.118 4.118
20 C 0.098 3.902
21 H 0.260 0.740
22 H 0.041 0.959
23 H 0.018 0.982
24 H 0.037 0.963
25 H 0.047 0.953
26 H 0.070 0.930
27 H 0.071 0.929
28 H 0.083 0.917
29 H 0.023 0.977
30 H 0.059 0.941
31 H 0.068 0.932
32 H 0.057 0.943
33 H 0.093 0.907
34 H 0.080 0.920
35 H 0.081 0.919
36 H 0.083 0.917
37 H 0.038 0.962
38 H 0.013 0.987
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.064 -14.386 -1.311 14.767
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.575 5.575
2 C -0.227 4.227
3 Si 0.938 3.062
4 H -0.199 1.199
5 H -0.206 1.206
6 H -0.206 1.206
7 C -0.648 4.648
8 H 0.057 0.943
9 C 0.015 3.985
10 H 0.020 0.980
11 C -0.130 4.130
12 C -0.140 4.140
13 C -0.135 4.135
14 C -0.072 4.072
15 N -0.252 5.252
16 C -0.066 4.066
17 C -0.173 4.173
18 C -0.162 4.162
19 C -0.155 4.155
20 C -0.029 4.029
21 H 0.070 0.930
22 H 0.060 0.940
23 H 0.037 0.963
24 H 0.056 0.944
25 H 0.065 0.935
26 H 0.088 0.912
27 H 0.089 0.911
28 H 0.102 0.898
29 H 0.041 0.959
30 H 0.076 0.924
31 H 0.086 0.914
32 H 0.075 0.925
33 H 0.112 0.888
34 H 0.098 0.902
35 H 0.100 0.900
36 H 0.101 0.899
37 H 0.057 0.943
38 H 0.031 0.969
Dipole moment (debyes) X Y Z Total
from point charges 2.366 -12.705 -1.461 13.006
hybrid contribution 0.914 -1.152 0.249 1.492
sum 3.280 -13.858 -1.212 14.292
Atomic orbital electron populations
1.70819 1.07733 1.30546 1.48359 1.27145 0.96625 1.06078 0.92887
0.82962 0.74210 0.71639 0.77422 1.19905 1.20566 1.20570 1.22395
0.94175 0.93537 1.54726 0.94308 1.17799 0.95328 0.92913 0.92425
0.97984 1.21274 0.97228 0.96076 0.98424 1.21162 0.97715 0.95304
0.99827 1.21877 0.97844 0.95250 0.98576 1.21885 0.96854 0.99029
0.89474 1.61904 1.57073 1.02659 1.03562 1.23404 0.96763 0.94581
0.91893 1.22981 1.00705 0.97904 0.95759 1.22700 1.03165 0.94322
0.96011 1.22916 1.01143 0.94594 0.96887 1.20721 0.94305 0.89234
0.98608 0.92977 0.93987 0.96298 0.94408 0.93469 0.91164 0.91078
0.89840 0.95866 0.92354 0.91365 0.92462 0.88819 0.90152 0.90037
0.89864 0.94312 0.96900
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -58.66 13.62 21.45 0.29 -58.36 16
2 C -0.03 -1.70 5.43 84.66 0.46 -1.24 16
3 Si 1.11 51.79 29.91 68.60 2.05 53.84 16
4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16
5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16
6 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16
7 C -0.61 -35.27 8.14 25.60 0.21 -35.07 16
8 H 0.04 2.24 7.80 -2.91 -0.02 2.22 16
9 C 0.03 1.80 1.55 -13.22 -0.02 1.78 16
10 H 0.00 0.12 6.15 -2.39 -0.01 0.10 16
11 C -0.09 -4.34 4.91 30.29 0.15 -4.19 16
12 C -0.10 -4.04 5.42 30.21 0.16 -3.88 16
13 C -0.10 -3.00 6.15 31.39 0.19 -2.81 16
14 C 0.06 1.77 4.97 87.15 0.43 2.20 16
15 N -0.53 -19.08 4.18 -883.40 -3.69 -22.77 16
16 C 0.04 1.23 2.96 45.44 0.13 1.37 16
17 C -0.14 -3.89 7.56 31.18 0.24 -3.65 16
18 C -0.12 -2.57 8.09 31.18 0.25 -2.31 16
19 C -0.12 -2.63 6.37 31.12 0.20 -2.43 16
20 C 0.10 4.40 4.08 83.94 0.34 4.74 16
21 H 0.26 16.55 6.65 -92.71 -0.62 15.93 16
22 H 0.04 1.89 7.15 -2.39 -0.02 1.87 16
23 H 0.02 0.98 8.00 -2.39 -0.02 0.96 16
24 H 0.04 1.64 7.38 -2.39 -0.02 1.63 16
25 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16
26 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16
27 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16
28 H 0.08 2.14 6.53 -2.39 -0.02 2.12 16
29 H 0.02 0.79 6.51 -2.39 -0.02 0.77 16
30 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16
31 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16
32 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16
33 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16
34 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16
35 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16
36 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16
37 H 0.04 1.81 7.54 -2.39 -0.02 1.79 16
38 H 0.01 0.58 7.24 -2.39 -0.02 0.56 16
Total: -1.00 -64.74 287.03 2.55 -62.18
By element:
Atomic # 1 Polarization: 9.45 SS G_CDS: 1.15 Total: 10.61 kcal
Atomic # 6 Polarization: -48.25 SS G_CDS: 2.75 Total: -45.50 kcal
Atomic # 7 Polarization: -77.73 SS G_CDS: -3.40 Total: -81.13 kcal
Atomic # 14 Polarization: 51.79 SS G_CDS: 2.05 Total: 53.84 kcal
Total: -64.74 2.55 -62.18 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260420125.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 52.806 kcal
(2) G-P(sol) polarization free energy of solvation -64.737 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.931 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.555 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.182 kcal
(6) G-S(sol) free energy of system = (1) + (5) -9.376 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds