Wall clock time and date at job start Mon Mar 30 2020 03:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00315 * 2 1 4 4 H 1.48502 * 109.47349 * 179.72153 * 3 2 1 5 5 H 1.48508 * 109.46825 * 299.72045 * 3 2 1 6 6 H 1.48493 * 109.47186 * 59.71647 * 3 2 1 7 7 C 1.37882 * 119.99925 * 179.71700 * 2 1 3 8 8 H 1.07992 * 120.00043 * 175.49197 * 7 2 1 9 9 C 1.50700 * 119.99758 * 355.49125 * 7 2 1 10 10 H 1.09004 * 109.04697 * 36.19672 * 9 7 2 11 11 C 1.54506 * 109.05805 * 277.27278 * 9 7 2 12 12 C 1.50465 * 108.85343 * 162.26551 * 11 9 7 13 13 C 1.54294 * 113.03466 * 92.15826 * 12 11 9 14 14 C 1.54068 * 112.28558 * 318.30315 * 13 12 11 15 15 N 1.44276 * 111.98134 * 318.91566 * 14 13 12 16 16 C 1.46895 * 110.99980 * 219.31423 * 15 14 13 17 17 C 1.53782 * 113.61717 * 157.15039 * 16 15 14 18 18 C 1.53954 * 87.01937 * 220.04699 * 17 16 15 19 19 C 1.53773 * 87.11234 * 25.36009 * 18 17 16 20 20 C 1.45861 * 109.05824 * 155.18865 * 9 7 2 21 21 H 0.97002 * 119.99917 * 185.26160 * 1 2 3 22 22 H 1.08995 * 109.57746 * 282.07667 * 11 9 7 23 23 H 1.08999 * 109.57461 * 42.45982 * 11 9 7 24 24 H 1.08997 * 108.77435 * 331.23900 * 12 11 9 25 25 H 1.08999 * 108.77263 * 213.07699 * 12 11 9 26 26 H 1.08999 * 108.91811 * 197.58212 * 13 12 11 27 27 H 1.09002 * 108.91661 * 79.02410 * 13 12 11 28 28 H 1.08998 * 108.97768 * 198.27410 * 14 13 12 29 29 H 1.09001 * 108.98068 * 79.55438 * 14 13 12 30 30 H 1.09003 * 112.84773 * 288.34638 * 16 15 14 31 31 H 1.09001 * 113.61395 * 334.56847 * 17 16 15 32 32 H 1.09001 * 113.61406 * 105.46476 * 17 16 15 33 33 H 1.08998 * 113.53442 * 270.80713 * 18 17 16 34 34 H 1.08999 * 113.66374 * 139.93668 * 18 17 16 35 35 H 1.09000 * 113.61732 * 220.08562 * 19 18 17 36 36 H 1.09005 * 113.68835 * 89.20125 * 19 18 17 37 37 H 1.09002 * 108.79145 * 302.75848 * 20 9 7 38 38 H 1.09003 * 108.79323 * 60.97430 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0068 5 1 1.8956 2.3934 -1.2160 6 1 1.8854 2.3993 1.2090 7 6 2.0045 -1.1941 0.0059 8 1 3.0820 -1.1959 -0.0676 9 6 1.2545 -2.4966 0.1149 10 1 0.3170 -2.4144 -0.4352 11 6 0.9421 -2.7760 1.6021 12 6 -0.1514 -3.8062 1.6840 13 6 0.3851 -5.2497 1.7808 14 6 1.5780 -5.4941 0.8370 15 7 1.3832 -4.8744 -0.4513 16 6 1.8765 -5.7391 -1.5314 17 6 1.2350 -5.4450 -2.8978 18 6 1.1979 -6.9682 -3.1182 19 6 1.1841 -7.1111 -1.5872 20 6 2.0601 -3.5608 -0.4733 21 1 -0.4850 -0.8365 0.0770 22 1 1.8364 -3.1524 2.0986 23 1 0.6138 -1.8558 2.0854 24 1 -0.7782 -3.7239 0.7962 25 1 -0.7628 -3.5997 2.5624 26 1 -0.4163 -5.9425 1.5243 27 1 0.7008 -5.4413 2.8064 28 1 1.7060 -6.5676 0.6982 29 1 2.4803 -5.0870 1.2932 30 1 2.9645 -5.7975 -1.5633 31 1 0.2471 -4.9898 -2.8274 32 1 1.8963 -4.9191 -3.5864 33 1 2.1003 -7.3624 -3.5854 34 1 0.2841 -7.3187 -3.5978 35 1 1.8043 -7.9285 -1.2193 36 1 0.1828 -7.1127 -1.1565 37 1 2.2861 -3.2995 -1.5071 38 1 2.9963 -3.6388 0.0794 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260420125.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:02 Heat of formation + Delta-G solvation = -9.376476 kcal Electronic energy + Delta-G solvation = -16299.087131 eV Core-core repulsion = 13947.567381 eV Total energy + Delta-G solvation = -2351.519750 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.83770 -38.56871 -35.54875 -33.99412 -32.50822 -28.07037 -26.91380 -26.15648 -25.21208 -24.13035 -21.52892 -20.58519 -20.12417 -18.82318 -17.26269 -16.64937 -16.27584 -15.70500 -15.49775 -15.06843 -14.99976 -14.21124 -13.92558 -13.72540 -13.29740 -13.22950 -12.77206 -12.64562 -12.56424 -12.40994 -11.96386 -11.90745 -11.71165 -11.49134 -11.37070 -11.13209 -11.04383 -11.02741 -10.44408 -10.34502 -9.17571 -8.58072 -6.28695 1.51000 1.60322 1.76164 2.56163 3.06875 3.23774 3.67035 3.80092 3.96704 3.97103 4.07804 4.09367 4.21715 4.40755 4.46921 4.55099 4.65579 4.78209 4.83269 4.84783 4.92215 4.96246 5.02562 5.05184 5.07178 5.09729 5.30222 5.36409 5.39887 5.53674 5.55364 5.63887 5.84525 6.01408 6.26208 6.36076 6.46082 6.71079 7.52632 8.81530 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.031822 B = 0.008353 C = 0.007219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.693493 B = 3351.098150 C = 3877.718387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.029 4.029 3 Si 1.115 2.885 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.610 4.610 8 H 0.039 0.961 9 C 0.035 3.965 10 H 0.002 0.998 11 C -0.092 4.092 12 C -0.102 4.102 13 C -0.097 4.097 14 C 0.056 3.944 15 N -0.528 5.528 16 C 0.042 3.958 17 C -0.135 4.135 18 C -0.124 4.124 19 C -0.118 4.118 20 C 0.098 3.902 21 H 0.260 0.740 22 H 0.041 0.959 23 H 0.018 0.982 24 H 0.037 0.963 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.023 0.977 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.038 0.962 38 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.064 -14.386 -1.311 14.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.227 4.227 3 Si 0.938 3.062 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.648 4.648 8 H 0.057 0.943 9 C 0.015 3.985 10 H 0.020 0.980 11 C -0.130 4.130 12 C -0.140 4.140 13 C -0.135 4.135 14 C -0.072 4.072 15 N -0.252 5.252 16 C -0.066 4.066 17 C -0.173 4.173 18 C -0.162 4.162 19 C -0.155 4.155 20 C -0.029 4.029 21 H 0.070 0.930 22 H 0.060 0.940 23 H 0.037 0.963 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.102 0.898 29 H 0.041 0.959 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.112 0.888 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.057 0.943 38 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 2.366 -12.705 -1.461 13.006 hybrid contribution 0.914 -1.152 0.249 1.492 sum 3.280 -13.858 -1.212 14.292 Atomic orbital electron populations 1.70819 1.07733 1.30546 1.48359 1.27145 0.96625 1.06078 0.92887 0.82962 0.74210 0.71639 0.77422 1.19905 1.20566 1.20570 1.22395 0.94175 0.93537 1.54726 0.94308 1.17799 0.95328 0.92913 0.92425 0.97984 1.21274 0.97228 0.96076 0.98424 1.21162 0.97715 0.95304 0.99827 1.21877 0.97844 0.95250 0.98576 1.21885 0.96854 0.99029 0.89474 1.61904 1.57073 1.02659 1.03562 1.23404 0.96763 0.94581 0.91893 1.22981 1.00705 0.97904 0.95759 1.22700 1.03165 0.94322 0.96011 1.22916 1.01143 0.94594 0.96887 1.20721 0.94305 0.89234 0.98608 0.92977 0.93987 0.96298 0.94408 0.93469 0.91164 0.91078 0.89840 0.95866 0.92354 0.91365 0.92462 0.88819 0.90152 0.90037 0.89864 0.94312 0.96900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.66 13.62 21.45 0.29 -58.36 16 2 C -0.03 -1.70 5.43 84.66 0.46 -1.24 16 3 Si 1.11 51.79 29.91 68.60 2.05 53.84 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 7 C -0.61 -35.27 8.14 25.60 0.21 -35.07 16 8 H 0.04 2.24 7.80 -2.91 -0.02 2.22 16 9 C 0.03 1.80 1.55 -13.22 -0.02 1.78 16 10 H 0.00 0.12 6.15 -2.39 -0.01 0.10 16 11 C -0.09 -4.34 4.91 30.29 0.15 -4.19 16 12 C -0.10 -4.04 5.42 30.21 0.16 -3.88 16 13 C -0.10 -3.00 6.15 31.39 0.19 -2.81 16 14 C 0.06 1.77 4.97 87.15 0.43 2.20 16 15 N -0.53 -19.08 4.18 -883.40 -3.69 -22.77 16 16 C 0.04 1.23 2.96 45.44 0.13 1.37 16 17 C -0.14 -3.89 7.56 31.18 0.24 -3.65 16 18 C -0.12 -2.57 8.09 31.18 0.25 -2.31 16 19 C -0.12 -2.63 6.37 31.12 0.20 -2.43 16 20 C 0.10 4.40 4.08 83.94 0.34 4.74 16 21 H 0.26 16.55 6.65 -92.71 -0.62 15.93 16 22 H 0.04 1.89 7.15 -2.39 -0.02 1.87 16 23 H 0.02 0.98 8.00 -2.39 -0.02 0.96 16 24 H 0.04 1.64 7.38 -2.39 -0.02 1.63 16 25 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 26 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.08 2.14 6.53 -2.39 -0.02 2.12 16 29 H 0.02 0.79 6.51 -2.39 -0.02 0.77 16 30 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 37 H 0.04 1.81 7.54 -2.39 -0.02 1.79 16 38 H 0.01 0.58 7.24 -2.39 -0.02 0.56 16 Total: -1.00 -64.74 287.03 2.55 -62.18 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 1.15 Total: 10.61 kcal Atomic # 6 Polarization: -48.25 SS G_CDS: 2.75 Total: -45.50 kcal Atomic # 7 Polarization: -77.73 SS G_CDS: -3.40 Total: -81.13 kcal Atomic # 14 Polarization: 51.79 SS G_CDS: 2.05 Total: 53.84 kcal Total: -64.74 2.55 -62.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260420125.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.806 kcal (2) G-P(sol) polarization free energy of solvation -64.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds