Wall clock time and date at job start Mon Mar 30 2020 03:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00217 * 2 1 4 4 H 1.48499 * 109.47334 * 90.00275 * 3 2 1 5 5 H 1.48496 * 109.46894 * 210.00200 * 3 2 1 6 6 H 1.48497 * 109.47071 * 329.99938 * 3 2 1 7 7 C 1.37882 * 119.99695 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99989 * 0.02562 * 7 2 1 9 9 C 1.50708 * 119.99832 * 179.97438 * 7 2 1 10 10 H 1.09000 * 108.76152 * 336.93227 * 9 7 2 11 11 C 1.45858 * 108.79451 * 95.29712 * 9 7 2 12 12 C 1.54497 * 111.59687 * 182.20767 * 11 9 7 13 13 C 1.50465 * 108.84682 * 282.79385 * 12 11 9 14 14 C 1.54293 * 113.02916 * 92.16459 * 13 12 11 15 15 C 1.54074 * 112.28430 * 318.30156 * 14 13 12 16 16 N 1.44270 * 111.98662 * 318.91627 * 15 14 13 17 17 C 1.46901 * 110.99677 * 219.31541 * 16 15 14 18 18 C 1.53778 * 113.61430 * 146.26368 * 17 16 15 19 19 C 1.53954 * 87.01982 * 220.04228 * 18 17 16 20 20 C 1.53777 * 113.61936 * 48.65259 * 17 16 15 21 21 H 0.97003 * 119.99910 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.05642 * 302.75493 * 11 9 7 23 23 H 1.09002 * 109.05049 * 61.73593 * 11 9 7 24 24 H 1.08998 * 109.57740 * 42.60520 * 12 11 9 25 25 H 1.09006 * 109.57726 * 162.86025 * 12 11 9 26 26 H 1.09002 * 108.77281 * 213.07652 * 13 12 11 27 27 H 1.08993 * 108.77379 * 331.24863 * 13 12 11 28 28 H 1.08999 * 108.91825 * 79.02263 * 14 13 12 29 29 H 1.08992 * 108.91860 * 197.58276 * 14 13 12 30 30 H 1.09003 * 108.97724 * 79.56202 * 15 14 13 31 31 H 1.09000 * 108.98037 * 198.34911 * 15 14 13 32 32 H 1.08999 * 112.84523 * 277.45703 * 17 16 15 33 33 H 1.08995 * 113.61931 * 334.56480 * 18 17 16 34 34 H 1.09002 * 113.61476 * 105.47019 * 18 17 16 35 35 H 1.09000 * 113.54093 * 270.81062 * 19 18 17 36 36 H 1.09002 * 113.74148 * 139.94484 * 19 18 17 37 37 H 1.09002 * 113.61548 * 254.53180 * 20 17 16 38 38 H 1.09001 * 113.61203 * 25.35401 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4467 2.6526 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5116 -1.1942 -0.0011 10 1 3.8620 -0.2445 -0.4054 11 6 3.9820 -1.3220 1.3736 12 6 5.5242 -1.2739 1.4537 13 6 6.0751 -2.6053 1.0201 14 6 6.4013 -2.6617 -0.4869 15 6 5.3172 -1.9819 -1.3452 16 7 3.9873 -2.2862 -0.8761 17 6 3.0676 -2.4976 -2.0019 18 6 1.9812 -3.5491 -1.7207 19 6 2.1911 -4.0354 -3.1663 20 6 3.6134 -3.4584 -3.0713 21 1 -0.4850 0.8401 0.0004 22 1 3.5692 -0.5070 1.9682 23 1 3.6349 -2.2713 1.7816 24 1 5.8999 -0.4911 0.7948 25 1 5.8304 -1.0663 2.4790 26 1 6.9856 -2.8085 1.5838 27 1 5.3430 -3.3794 1.2497 28 1 7.3545 -2.1625 -0.6611 29 1 6.4898 -3.7047 -0.7905 30 1 5.4657 -0.9025 -1.3141 31 1 5.4152 -2.3233 -2.3757 32 1 2.6777 -1.5654 -2.4106 33 1 2.2680 -4.2826 -0.9673 34 1 0.9949 -3.1209 -1.5421 35 1 1.5602 -3.5242 -3.8935 36 1 2.1660 -5.1199 -3.2725 37 1 3.9429 -2.9571 -3.9814 38 1 4.3484 -4.1662 -2.6881 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260456025.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:53 Heat of formation + Delta-G solvation = 20.433463 kcal Electronic energy + Delta-G solvation = -16760.347076 eV Core-core repulsion = 14410.119983 eV Total energy + Delta-G solvation = -2350.227094 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.23375 -36.73728 -33.31435 -32.33153 -31.21222 -26.61878 -25.85735 -24.49123 -23.00539 -22.43181 -19.37264 -19.13599 -18.27187 -17.02848 -15.75408 -14.75965 -14.44029 -14.21005 -13.77275 -13.63333 -13.13088 -12.58192 -12.15471 -12.05602 -11.78554 -11.66580 -11.13599 -11.01559 -10.78297 -10.63915 -10.56868 -10.21046 -10.00694 -9.86674 -9.70540 -9.48815 -9.43863 -9.22363 -8.70747 -8.53723 -7.16889 -6.06616 -4.05184 3.25686 3.33642 3.35263 4.39874 4.86441 5.24902 5.31205 5.40050 5.47133 5.51617 5.58178 5.72144 5.83862 5.89565 6.07911 6.14123 6.18858 6.25111 6.34489 6.37325 6.43376 6.45165 6.56993 6.63231 6.68549 6.76486 6.93427 6.99812 7.07427 7.09063 7.21020 7.23846 7.53413 7.73866 8.15681 8.32427 8.72595 9.04090 9.56809 11.05608 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.020141 B = 0.015153 C = 0.010061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.833157 B = 1847.341261 C = 2782.473801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.863 3.137 4 H -0.276 1.276 5 H -0.264 1.264 6 H -0.290 1.290 7 C -0.510 4.510 8 H 0.092 0.908 9 C 0.166 3.834 10 H 0.012 0.988 11 C -0.092 4.092 12 C -0.125 4.125 13 C -0.102 4.102 14 C -0.104 4.104 15 C 0.050 3.950 16 N -0.514 5.514 17 C 0.096 3.904 18 C -0.108 4.108 19 C -0.148 4.148 20 C -0.145 4.145 21 H 0.262 0.738 22 H 0.050 0.950 23 H 0.061 0.939 24 H 0.049 0.951 25 H 0.047 0.953 26 H 0.038 0.962 27 H 0.066 0.934 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.026 0.974 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.051 0.949 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.369 -4.478 -2.763 10.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.129 4.129 3 Si 0.692 3.308 4 H -0.201 1.201 5 H -0.189 1.189 6 H -0.216 1.216 7 C -0.548 4.548 8 H 0.110 0.890 9 C 0.060 3.940 10 H 0.029 0.971 11 C -0.130 4.130 12 C -0.163 4.163 13 C -0.140 4.140 14 C -0.142 4.142 15 C -0.079 4.079 16 N -0.238 5.238 17 C -0.013 4.013 18 C -0.146 4.146 19 C -0.186 4.186 20 C -0.183 4.183 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.079 0.921 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.216 -4.790 -2.483 10.679 hybrid contribution 0.404 1.841 -0.414 1.930 sum 9.620 -2.949 -2.897 10.470 Atomic orbital electron populations 1.69884 1.06014 1.26662 1.51193 1.25000 0.94651 0.98440 0.94845 0.87057 0.80364 0.84619 0.78780 1.20137 1.18936 1.21619 1.21316 0.88689 0.95062 1.49741 0.89035 1.18870 0.96191 0.88460 0.90496 0.97059 1.20731 0.91706 1.01591 0.99009 1.21499 0.98354 0.97149 0.99277 1.21126 0.99430 0.98454 0.94976 1.21905 0.96855 0.99926 0.95564 1.21882 0.91195 0.97585 0.97257 1.61961 0.99889 1.44795 1.17179 1.22680 0.93325 0.95979 0.89292 1.22923 0.99929 0.97717 0.94041 1.22803 0.97032 0.99413 0.99350 1.23170 0.96851 0.99734 0.98548 0.92784 0.93103 0.92062 0.93219 0.93443 0.94300 0.91538 0.93542 0.92856 0.95538 0.92654 0.91553 0.90663 0.90719 0.91031 0.92444 0.93042 0.90306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.66 13.96 55.43 0.77 -25.89 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.86 21.27 27.10 -169.99 -4.61 16.66 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.26 -6.34 5.95 56.52 0.34 -6.00 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 7 C -0.51 -13.55 6.81 -34.43 -0.23 -13.78 16 8 H 0.09 2.62 5.49 -52.49 -0.29 2.33 16 9 C 0.17 3.83 1.30 -71.74 -0.09 3.74 16 10 H 0.01 0.29 3.87 -51.93 -0.20 0.09 16 11 C -0.09 -1.96 4.65 -29.33 -0.14 -2.09 16 12 C -0.13 -2.22 5.60 -27.21 -0.15 -2.37 16 13 C -0.10 -1.65 5.42 -27.32 -0.15 -1.80 16 14 C -0.10 -1.62 6.15 -25.49 -0.16 -1.77 16 15 C 0.05 0.90 4.90 -4.67 -0.02 0.88 16 16 N -0.51 -10.52 4.18 -223.93 -0.94 -11.46 16 17 C 0.10 1.93 2.47 -66.90 -0.17 1.76 16 18 C -0.11 -2.12 6.19 -25.83 -0.16 -2.28 16 19 C -0.15 -2.40 8.09 -25.83 -0.21 -2.60 16 20 C -0.15 -2.38 5.91 -25.92 -0.15 -2.53 16 21 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 22 H 0.05 1.13 7.62 -51.93 -0.40 0.73 16 23 H 0.06 1.33 7.58 -51.93 -0.39 0.93 16 24 H 0.05 0.90 7.15 -51.93 -0.37 0.53 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 1.15 7.38 -51.93 -0.38 0.77 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.03 0.51 6.51 -51.93 -0.34 0.17 16 31 H 0.06 0.92 5.94 -51.93 -0.31 0.61 16 32 H 0.07 1.52 7.65 -51.93 -0.40 1.12 16 33 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.07 1.66 7.13 -51.93 -0.37 1.29 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 1.25 7.91 -51.93 -0.41 0.84 16 LS Contribution 276.01 15.07 4.16 4.16 Total: -1.00 -27.73 276.01 -8.78 -36.50 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -6.44 Total: 0.96 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: -1.73 Total: -20.93 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: -0.16 Total: -37.35 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.61 Total: 16.66 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.73 -8.78 -36.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260456025.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.938 kcal (2) G-P(sol) polarization free energy of solvation -27.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds