Wall clock time and date at job start Mon Mar 30 2020 03:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99803 * 2 1 4 4 H 1.48502 * 109.47256 * 269.99958 * 3 2 1 5 5 H 1.48502 * 109.47061 * 29.99807 * 3 2 1 6 6 H 1.48501 * 109.46973 * 149.99974 * 3 2 1 7 7 C 1.37880 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99689 * 0.02562 * 7 2 1 9 9 C 1.50694 * 119.99806 * 179.97438 * 7 2 1 10 10 H 1.09001 * 108.89764 * 55.68369 * 9 7 2 11 11 C 1.54075 * 108.98284 * 296.92018 * 9 7 2 12 12 C 1.54286 * 112.28887 * 198.27239 * 11 9 7 13 13 C 1.50464 * 113.03693 * 318.29968 * 12 11 9 14 14 C 1.54505 * 108.84957 * 92.15496 * 13 12 11 15 15 C 1.45866 * 111.59230 * 282.81108 * 14 13 12 16 16 N 1.44276 * 108.97819 * 174.44973 * 9 7 2 17 17 C 1.46902 * 110.99753 * 339.95576 * 16 9 7 18 18 C 1.53777 * 113.61114 * 189.87373 * 17 16 9 19 19 C 1.53785 * 87.07941 * 220.01576 * 18 17 16 20 20 C 1.53778 * 113.61197 * 92.37632 * 17 16 9 21 21 H 0.97000 * 120.00686 * 359.97438 * 1 2 3 22 22 H 1.09003 * 108.91256 * 77.54682 * 11 9 7 23 23 H 1.08995 * 108.91453 * 318.99744 * 11 9 7 24 24 H 1.09005 * 108.76777 * 197.38539 * 12 11 9 25 25 H 1.08999 * 108.77383 * 79.22175 * 12 11 9 26 26 H 1.09002 * 109.57351 * 332.35144 * 13 12 11 27 27 H 1.08994 * 109.67694 * 212.02936 * 13 12 11 28 28 H 1.08999 * 109.05944 * 162.26968 * 14 13 12 29 29 H 1.08997 * 109.05835 * 43.35141 * 14 13 12 30 30 H 1.09006 * 108.79424 * 300.43884 * 15 14 13 31 31 H 1.08998 * 108.79310 * 182.21976 * 15 14 13 32 32 H 1.09001 * 112.90636 * 321.12441 * 17 16 9 33 33 H 1.09004 * 113.61590 * 105.46982 * 18 17 16 34 34 H 1.08997 * 113.61483 * 334.56702 * 18 17 16 35 35 H 1.09005 * 113.61115 * 139.97737 * 19 18 17 36 36 H 1.08992 * 113.61771 * 270.88635 * 19 18 17 37 37 H 1.08994 * 113.61702 * 25.43162 * 20 17 16 38 38 H 1.09005 * 113.61507 * 254.52570 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0000 10 1 3.8648 -0.6120 0.8512 11 6 4.0121 -0.5351 -1.2998 12 6 5.4843 -0.8835 -1.6030 13 6 6.3606 -0.8521 -0.3803 14 6 6.4099 -2.2685 0.2350 15 6 5.1926 -2.5735 0.9785 16 7 3.9808 -2.5518 0.1326 17 6 2.9339 -3.4185 0.6902 18 6 3.4368 -4.8180 1.0817 19 6 2.1179 -5.3654 0.5111 20 6 2.0745 -4.1125 -0.3796 21 1 -0.4851 0.8400 0.0004 22 1 3.9167 0.5467 -1.2070 23 1 3.3909 -0.8731 -2.1292 24 1 5.8710 -0.1694 -2.3301 25 1 5.5260 -1.8816 -2.0389 26 1 5.9482 -0.1524 0.3467 27 1 7.3671 -0.5393 -0.6580 28 1 7.2643 -2.3344 0.9087 29 1 6.5313 -2.9997 -0.5642 30 1 5.0763 -1.8412 1.7775 31 1 5.2921 -3.5632 1.4242 32 1 2.3499 -2.9302 1.4703 33 1 3.5394 -4.9599 2.1576 34 1 4.3186 -5.1364 0.5258 35 1 2.2359 -6.2942 -0.0473 36 1 1.3107 -5.4095 1.2422 37 1 2.5839 -4.2382 -1.3350 38 1 1.0772 -3.6850 -0.4835 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260456029.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:55 Heat of formation + Delta-G solvation = 32.811442 kcal Electronic energy + Delta-G solvation = -16782.443445 eV Core-core repulsion = 14432.753101 eV Total energy + Delta-G solvation = -2349.690344 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.36678 -36.81204 -33.40252 -32.37826 -31.22709 -26.65677 -25.96480 -24.51909 -23.40939 -21.95238 -19.95178 -18.91166 -18.54211 -16.62159 -15.75186 -14.84640 -14.74004 -13.87794 -13.80828 -13.62280 -13.44585 -12.78601 -12.15564 -12.09978 -11.68529 -11.60211 -11.26073 -11.07803 -10.79691 -10.65795 -10.46853 -10.20127 -9.97762 -9.83211 -9.55680 -9.53299 -9.49240 -9.26733 -8.63106 -8.52011 -7.26494 -6.04835 -4.03527 3.29594 3.39066 3.40353 4.42873 4.82173 5.20955 5.25727 5.33700 5.35807 5.51810 5.57104 5.74552 5.75642 5.95951 6.02773 6.15653 6.22662 6.26882 6.30538 6.34061 6.40642 6.46972 6.55390 6.60864 6.65573 6.78125 6.83930 6.92025 6.97620 7.03377 7.12788 7.18989 7.51982 7.60720 8.08534 8.34001 8.69121 9.02892 9.58936 11.06237 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.021201 B = 0.014934 C = 0.009763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.389036 B = 1874.482767 C = 2867.371166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.074 3.926 3 Si 0.875 3.125 4 H -0.278 1.278 5 H -0.298 1.298 6 H -0.267 1.267 7 C -0.536 4.536 8 H 0.106 0.894 9 C 0.182 3.818 10 H 0.004 0.996 11 C -0.107 4.107 12 C -0.109 4.109 13 C -0.115 4.115 14 C -0.107 4.107 15 C 0.048 3.952 16 N -0.506 5.506 17 C 0.086 3.914 18 C -0.146 4.146 19 C -0.147 4.147 20 C -0.115 4.115 21 H 0.262 0.738 22 H 0.035 0.965 23 H 0.062 0.938 24 H 0.036 0.964 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.026 0.974 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.471 -5.789 0.701 11.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.127 4.127 3 Si 0.705 3.295 4 H -0.205 1.205 5 H -0.225 1.225 6 H -0.192 1.192 7 C -0.574 4.574 8 H 0.124 0.876 9 C 0.073 3.927 10 H 0.021 0.979 11 C -0.146 4.146 12 C -0.147 4.147 13 C -0.152 4.152 14 C -0.145 4.145 15 C -0.080 4.080 16 N -0.230 5.230 17 C -0.022 4.022 18 C -0.183 4.183 19 C -0.185 4.185 20 C -0.152 4.152 21 H 0.072 0.928 22 H 0.054 0.946 23 H 0.081 0.919 24 H 0.055 0.945 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.044 0.956 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.426 -5.851 0.227 11.097 hybrid contribution 0.182 1.527 0.702 1.691 sum 9.608 -4.324 0.929 10.577 Atomic orbital electron populations 1.69879 1.06130 1.26784 1.51018 1.24949 0.94614 0.98655 0.94523 0.87017 0.79981 0.84244 0.78233 1.20467 1.22512 1.19230 1.21911 0.89063 0.95805 1.50571 0.87617 1.19485 0.95533 0.85345 0.92351 0.97875 1.22317 0.93657 0.97866 1.00725 1.21252 0.96060 1.00977 0.96424 1.21330 0.98447 0.96948 0.98512 1.20552 0.96827 0.97203 0.99906 1.20974 0.92152 1.00124 0.94714 1.61874 1.03866 1.10887 1.46376 1.22923 0.92921 0.89595 0.96763 1.23175 0.97546 0.98238 0.99383 1.22762 0.97687 0.98003 1.00024 1.23011 1.00538 0.94015 0.97676 0.92761 0.94614 0.91944 0.94492 0.91994 0.92403 0.93221 0.92982 0.91837 0.95619 0.92167 0.90294 0.92844 0.90341 0.92360 0.90884 0.90391 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.05 13.96 55.43 0.77 -26.27 16 2 C 0.07 2.11 5.45 -17.82 -0.10 2.02 16 3 Si 0.88 22.01 24.37 -169.99 -4.14 17.87 16 4 H -0.28 -6.89 7.02 56.52 0.40 -6.49 16 5 H -0.30 -7.54 7.11 56.52 0.40 -7.13 16 6 H -0.27 -6.53 6.40 56.52 0.36 -6.17 16 7 C -0.54 -14.46 7.58 -34.44 -0.26 -14.73 16 8 H 0.11 2.94 3.56 -52.49 -0.19 2.75 16 9 C 0.18 4.26 1.39 -69.71 -0.10 4.16 16 10 H 0.00 0.09 5.24 -51.93 -0.27 -0.18 16 11 C -0.11 -2.38 4.75 -25.50 -0.12 -2.50 16 12 C -0.11 -2.00 5.42 -27.32 -0.15 -2.15 16 13 C -0.11 -1.91 5.60 -27.21 -0.15 -2.06 16 14 C -0.11 -1.66 5.53 -29.32 -0.16 -1.82 16 15 C 0.05 0.85 4.80 -6.71 -0.03 0.82 16 16 N -0.51 -10.31 4.22 -223.91 -0.94 -11.26 16 17 C 0.09 1.71 2.31 -66.90 -0.15 1.55 16 18 C -0.15 -2.32 6.06 -25.92 -0.16 -2.47 16 19 C -0.15 -2.30 8.08 -25.91 -0.21 -2.51 16 20 C -0.11 -2.19 6.83 -25.92 -0.18 -2.37 16 21 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 22 H 0.04 0.82 4.29 -51.93 -0.22 0.60 16 23 H 0.06 1.45 7.97 -51.93 -0.41 1.04 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.06 1.11 7.38 -51.93 -0.38 0.73 16 26 H 0.06 1.06 7.15 -51.93 -0.37 0.69 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.97 7.59 -51.93 -0.39 0.57 16 30 H 0.03 0.48 7.24 -51.93 -0.38 0.11 16 31 H 0.06 0.95 5.90 -51.93 -0.31 0.65 16 32 H 0.08 1.79 6.92 -51.93 -0.36 1.43 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.20 7.71 -51.93 -0.40 0.80 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.07 1.58 6.75 -51.93 -0.35 1.23 16 LS Contribution 269.87 15.07 4.07 4.07 Total: -1.00 -28.42 269.87 -8.19 -36.61 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -6.17 Total: 1.04 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: -1.77 Total: -22.06 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: -0.17 Total: -37.53 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.14 Total: 17.87 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.42 -8.19 -36.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260456029.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.421 kcal (2) G-P(sol) polarization free energy of solvation -28.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds