Wall clock time and date at job start Mon Mar 30 2020 03:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99731 * 2 1 4 4 H 1.48502 * 109.47209 * 269.99964 * 3 2 1 5 5 H 1.48503 * 109.47049 * 30.00223 * 3 2 1 6 6 H 1.48508 * 109.47182 * 149.99873 * 3 2 1 7 7 C 1.37876 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00099 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00059 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47213 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.50238 * 54.92440 * 10 9 7 12 12 C 1.53120 * 109.50294 * 294.80046 * 10 9 7 13 13 C 1.53120 * 109.15972 * 182.40242 * 12 10 9 14 14 C 1.53034 * 109.27663 * 57.65936 * 13 12 10 15 15 N 1.46850 * 109.52564 * 300.81923 * 14 13 12 16 16 C 1.46895 * 110.99945 * 185.83944 * 15 14 13 17 17 C 1.53791 * 113.61214 * 149.92839 * 16 15 14 18 18 C 1.53956 * 87.01736 * 220.04807 * 17 16 15 19 19 C 1.53783 * 87.11660 * 25.36008 * 18 17 16 20 20 C 1.46850 * 111.19713 * 61.73898 * 15 14 13 21 21 H 0.96994 * 120.00411 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47092 * 60.00166 * 9 7 2 23 23 H 1.09005 * 109.47424 * 299.99921 * 9 7 2 24 24 H 1.08996 * 109.52458 * 302.31577 * 12 10 9 25 25 H 1.08999 * 109.51695 * 62.43858 * 12 10 9 26 26 H 1.09000 * 109.49976 * 177.59581 * 13 12 10 27 27 H 1.09002 * 109.50465 * 297.67936 * 13 12 10 28 28 H 1.09007 * 109.46201 * 60.83416 * 14 13 12 29 29 H 1.09001 * 109.46285 * 180.81057 * 14 13 12 30 30 H 1.09000 * 112.85323 * 281.11679 * 16 15 14 31 31 H 1.09001 * 113.60987 * 334.56193 * 17 16 15 32 32 H 1.08992 * 113.61600 * 105.47184 * 17 16 15 33 33 H 1.09000 * 113.53686 * 270.81269 * 18 17 16 34 34 H 1.08993 * 113.74480 * 139.94111 * 18 17 16 35 35 H 1.08996 * 113.61803 * 220.09416 * 19 18 17 36 36 H 1.09003 * 113.61105 * 89.18499 * 19 18 17 37 37 H 1.08995 * 109.45831 * 178.23975 * 20 15 14 38 38 H 1.08998 * 109.45719 * 58.27825 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6526 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 1 3.5859 -3.1758 -0.8433 12 6 3.6217 -3.3211 1.3076 13 6 4.1871 -4.7440 1.3240 14 6 5.7074 -4.6855 1.1592 15 7 6.0386 -4.0225 -0.1086 16 6 7.4839 -4.0713 -0.3663 17 6 7.8424 -4.0990 -1.8616 18 6 8.9362 -5.1196 -1.4980 19 6 8.0785 -5.4866 -0.2755 20 6 5.5467 -2.6390 -0.1286 21 1 -0.4850 0.8400 -0.0004 22 1 3.8752 -0.6804 0.8889 23 1 3.8746 -0.6800 -0.8912 24 1 4.0247 -2.7592 2.1502 25 1 2.5349 -3.3592 1.3817 26 1 3.9420 -5.2221 2.2724 27 1 3.7535 -5.3174 0.5046 28 1 6.1410 -4.1239 1.9868 29 1 6.1116 -5.6978 1.1560 30 1 8.0407 -3.3264 0.2023 31 1 7.0539 -4.5101 -2.4920 32 1 8.2337 -3.1525 -2.2344 33 1 9.8908 -4.6612 -1.2398 34 1 9.0374 -5.9303 -2.2195 35 1 8.6601 -5.6585 0.6302 36 1 7.3547 -6.2777 -0.4716 37 1 5.8343 -2.1649 -1.0670 38 1 5.9811 -2.0871 0.7050 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260458336.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:33 Heat of formation + Delta-G solvation = 1.898150 kcal Electronic energy + Delta-G solvation = -15777.759979 eV Core-core repulsion = 13426.729133 eV Total energy + Delta-G solvation = -2351.030845 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.57755 -37.25190 -33.56081 -31.83035 -31.13956 -27.50630 -25.63365 -25.09845 -23.01489 -22.33478 -20.49823 -19.30958 -18.77880 -16.71511 -16.26139 -15.37622 -14.53746 -14.23281 -14.10031 -13.48853 -13.22347 -13.12325 -12.55786 -12.40650 -12.30651 -11.93584 -11.58324 -11.44369 -11.01928 -10.73903 -10.65934 -10.56308 -10.40795 -10.26921 -10.01389 -9.67795 -9.54091 -9.25020 -8.97883 -8.48814 -8.02483 -5.99549 -3.96237 3.33177 3.40495 3.44354 4.15442 4.49147 4.57793 4.68673 4.86559 4.93341 5.27174 5.34059 5.41415 5.51308 5.57209 5.64737 5.75438 5.80323 5.83026 5.85996 5.97323 6.05115 6.06861 6.19494 6.27504 6.30231 6.43180 6.52123 6.58932 6.89402 6.97173 7.09630 7.33243 7.40827 7.46694 7.56861 7.85924 8.60382 9.06365 9.63619 11.13947 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.040795 B = 0.006510 C = 0.005903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.199875 B = 4300.337037 C = 4741.965358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.877 3.123 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.267 1.267 7 C -0.511 4.511 8 H 0.074 0.926 9 C -0.009 4.009 10 C -0.067 4.067 11 H 0.070 0.930 12 C -0.106 4.106 13 C -0.118 4.118 14 C 0.059 3.941 15 N -0.527 5.527 16 C 0.052 3.948 17 C -0.125 4.125 18 C -0.143 4.143 19 C -0.132 4.132 20 C 0.060 3.940 21 H 0.262 0.738 22 H 0.013 0.987 23 H 0.010 0.990 24 H 0.048 0.952 25 H 0.075 0.925 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.025 0.975 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.090 0.910 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.989 -9.319 0.255 18.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.135 4.135 3 Si 0.705 3.295 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.192 1.192 7 C -0.549 4.549 8 H 0.092 0.908 9 C -0.047 4.047 10 C -0.086 4.086 11 H 0.088 0.912 12 C -0.144 4.144 13 C -0.156 4.156 14 C -0.069 4.069 15 N -0.251 5.251 16 C -0.056 4.056 17 C -0.163 4.163 18 C -0.181 4.181 19 C -0.169 4.169 20 C -0.067 4.067 21 H 0.071 0.929 22 H 0.031 0.969 23 H 0.029 0.971 24 H 0.067 0.933 25 H 0.094 0.906 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.043 0.957 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.109 0.891 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 15.599 -9.453 -0.107 18.240 hybrid contribution 0.768 1.505 0.686 1.823 sum 16.367 -7.948 0.579 18.204 Atomic orbital electron populations 1.69912 1.06250 1.26728 1.51607 1.25019 0.94684 0.99033 0.94801 0.86818 0.80351 0.83889 0.78440 1.20366 1.21511 1.19154 1.21130 0.89356 0.94361 1.50087 0.90812 1.19606 0.97285 0.91785 0.96014 1.21039 0.91385 0.98516 0.97614 0.91171 1.21543 1.01812 0.93540 0.97510 1.21644 0.94202 0.98737 1.01002 1.22029 0.96880 0.98230 0.89724 1.62194 1.11799 1.17776 1.33313 1.23145 0.88500 0.96857 0.97137 1.22979 0.98140 0.98994 0.96210 1.22754 0.97418 0.99544 0.98353 1.23000 0.98750 0.97153 0.98047 1.22258 0.97284 0.87208 0.99979 0.92857 0.96869 0.97130 0.93318 0.90612 0.92405 0.91513 0.95674 0.91464 0.92240 0.89129 0.91976 0.90617 0.91354 0.92057 0.89319 0.91407 0.95689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.14 13.96 55.43 0.77 -27.36 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 7 C -0.51 -14.55 9.00 -34.44 -0.31 -14.86 16 8 H 0.07 2.25 7.32 -52.49 -0.38 1.86 16 9 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 10 C -0.07 -1.35 2.30 -90.54 -0.21 -1.56 16 11 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 12 C -0.11 -2.02 5.06 -26.61 -0.13 -2.15 16 13 C -0.12 -1.82 6.09 -26.65 -0.16 -1.98 16 14 C 0.06 0.84 5.25 -3.83 -0.02 0.82 16 15 N -0.53 -7.98 4.63 -225.71 -1.05 -9.03 16 16 C 0.05 0.67 3.26 -66.89 -0.22 0.45 16 17 C -0.13 -1.44 7.88 -25.82 -0.20 -1.65 16 18 C -0.14 -1.36 8.09 -25.83 -0.21 -1.57 16 19 C -0.13 -1.39 6.46 -25.91 -0.17 -1.55 16 20 C 0.06 1.05 4.72 -3.83 -0.02 1.03 16 21 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 22 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 23 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 24 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.08 1.60 7.04 -51.93 -0.37 1.23 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.02 0.36 8.14 -51.92 -0.42 -0.06 16 29 H 0.07 0.84 6.62 -51.93 -0.34 0.50 16 30 H 0.06 0.77 8.11 -51.93 -0.42 0.35 16 31 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.97 7.70 -51.93 -0.40 0.57 16 37 H 0.07 1.17 8.12 -51.93 -0.42 0.75 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 291.44 15.07 4.39 4.39 Total: -1.00 -29.77 291.44 -9.31 -39.09 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -6.92 Total: -2.91 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -1.85 Total: -21.53 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: -0.27 Total: -36.39 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.77 -9.31 -39.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260458336.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.985 kcal (2) G-P(sol) polarization free energy of solvation -29.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds