Wall clock time and date at job start Mon Mar 30 2020 03:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99731 * 2 1 4 4 H 1.48502 * 109.47209 * 269.99964 * 3 2 1 5 5 H 1.48503 * 109.47049 * 30.00223 * 3 2 1 6 6 H 1.48508 * 109.47182 * 149.99873 * 3 2 1 7 7 C 1.37876 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00099 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00059 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47213 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.50238 * 54.92440 * 10 9 7 12 12 C 1.53120 * 109.50294 * 294.80046 * 10 9 7 13 13 C 1.53120 * 109.15972 * 182.40242 * 12 10 9 14 14 C 1.53034 * 109.27663 * 57.65936 * 13 12 10 15 15 N 1.46850 * 109.52564 * 300.81923 * 14 13 12 16 16 C 1.46895 * 110.99945 * 185.83944 * 15 14 13 17 17 C 1.53791 * 113.61214 * 149.92839 * 16 15 14 18 18 C 1.53956 * 87.01736 * 220.04807 * 17 16 15 19 19 C 1.53783 * 87.11660 * 25.36008 * 18 17 16 20 20 C 1.46850 * 111.19713 * 61.73898 * 15 14 13 21 21 H 0.96994 * 120.00411 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47092 * 60.00166 * 9 7 2 23 23 H 1.09005 * 109.47424 * 299.99921 * 9 7 2 24 24 H 1.08996 * 109.52458 * 302.31577 * 12 10 9 25 25 H 1.08999 * 109.51695 * 62.43858 * 12 10 9 26 26 H 1.09000 * 109.49976 * 177.59581 * 13 12 10 27 27 H 1.09002 * 109.50465 * 297.67936 * 13 12 10 28 28 H 1.09007 * 109.46201 * 60.83416 * 14 13 12 29 29 H 1.09001 * 109.46285 * 180.81057 * 14 13 12 30 30 H 1.09000 * 112.85323 * 281.11679 * 16 15 14 31 31 H 1.09001 * 113.60987 * 334.56193 * 17 16 15 32 32 H 1.08992 * 113.61600 * 105.47184 * 17 16 15 33 33 H 1.09000 * 113.53686 * 270.81269 * 18 17 16 34 34 H 1.08993 * 113.74480 * 139.94111 * 18 17 16 35 35 H 1.08996 * 113.61803 * 220.09416 * 19 18 17 36 36 H 1.09003 * 113.61105 * 89.18499 * 19 18 17 37 37 H 1.08995 * 109.45831 * 178.23975 * 20 15 14 38 38 H 1.08998 * 109.45719 * 58.27825 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6526 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 1 3.5859 -3.1758 -0.8433 12 6 3.6217 -3.3211 1.3076 13 6 4.1871 -4.7440 1.3240 14 6 5.7074 -4.6855 1.1592 15 7 6.0386 -4.0225 -0.1086 16 6 7.4839 -4.0713 -0.3663 17 6 7.8424 -4.0990 -1.8616 18 6 8.9362 -5.1196 -1.4980 19 6 8.0785 -5.4866 -0.2755 20 6 5.5467 -2.6390 -0.1286 21 1 -0.4850 0.8400 -0.0004 22 1 3.8752 -0.6804 0.8889 23 1 3.8746 -0.6800 -0.8912 24 1 4.0247 -2.7592 2.1502 25 1 2.5349 -3.3592 1.3817 26 1 3.9420 -5.2221 2.2724 27 1 3.7535 -5.3174 0.5046 28 1 6.1410 -4.1239 1.9868 29 1 6.1116 -5.6978 1.1560 30 1 8.0407 -3.3264 0.2023 31 1 7.0539 -4.5101 -2.4920 32 1 8.2337 -3.1525 -2.2344 33 1 9.8908 -4.6612 -1.2398 34 1 9.0374 -5.9303 -2.2195 35 1 8.6601 -5.6585 0.6302 36 1 7.3547 -6.2777 -0.4716 37 1 5.8343 -2.1649 -1.0670 38 1 5.9811 -2.0871 0.7050 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260458336.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:32 Heat of formation + Delta-G solvation = -15.904621 kcal Electronic energy + Delta-G solvation = -15778.531965 eV Core-core repulsion = 13426.729133 eV Total energy + Delta-G solvation = -2351.802831 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.68751 -38.47733 -35.39422 -33.62734 -32.56857 -29.32074 -26.61915 -26.19129 -24.70399 -23.58280 -22.03107 -20.54192 -20.01704 -18.90109 -17.37716 -16.39939 -16.26928 -15.68212 -15.39797 -14.97950 -14.84435 -14.63529 -14.15933 -13.66177 -13.50460 -13.29025 -13.13189 -12.66384 -12.45640 -12.36858 -12.03803 -11.89629 -11.73379 -11.66477 -11.39065 -11.23899 -11.20654 -10.87161 -10.74638 -10.69809 -9.20000 -8.27005 -6.29379 1.34546 1.35979 1.47862 2.36610 3.00976 3.07964 3.66952 3.85000 3.95593 3.99687 4.05363 4.13764 4.16675 4.35156 4.56991 4.58628 4.69175 4.73752 4.83409 4.88873 4.93950 4.96949 4.99865 5.05242 5.07776 5.13670 5.20869 5.30995 5.38194 5.41934 5.53241 5.56790 5.70499 5.72363 6.19027 6.32878 6.37105 6.77740 7.34128 8.89850 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.040795 B = 0.006510 C = 0.005903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.199875 B = 4300.337037 C = 4741.965358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.003 3.997 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.249 1.249 7 C -0.518 4.518 8 H 0.034 0.966 9 C -0.005 4.005 10 C -0.063 4.063 11 H 0.049 0.951 12 C -0.104 4.104 13 C -0.111 4.111 14 C 0.062 3.938 15 N -0.535 5.535 16 C 0.042 3.958 17 C -0.130 4.130 18 C -0.130 4.130 19 C -0.125 4.125 20 C 0.072 3.928 21 H 0.265 0.735 22 H 0.015 0.985 23 H 0.015 0.985 24 H 0.049 0.951 25 H 0.041 0.959 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.028 0.972 29 H 0.092 0.908 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.983 -9.523 0.532 21.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.193 4.193 3 Si 0.771 3.229 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.173 1.173 7 C -0.556 4.556 8 H 0.052 0.948 9 C -0.043 4.043 10 C -0.082 4.082 11 H 0.068 0.932 12 C -0.142 4.142 13 C -0.149 4.149 14 C -0.066 4.066 15 N -0.260 5.260 16 C -0.066 4.066 17 C -0.168 4.168 18 C -0.168 4.168 19 C -0.162 4.162 20 C -0.056 4.056 21 H 0.074 0.926 22 H 0.033 0.967 23 H 0.033 0.967 24 H 0.067 0.933 25 H 0.060 0.940 26 H 0.097 0.903 27 H 0.078 0.922 28 H 0.047 0.953 29 H 0.110 0.890 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 18.614 -9.678 0.167 20.981 hybrid contribution -0.238 1.492 0.587 1.621 sum 18.376 -8.186 0.755 20.131 Atomic orbital electron populations 1.70066 1.08215 1.27965 1.53183 1.25975 0.95561 1.03317 0.94454 0.85704 0.79450 0.78623 0.79134 1.19226 1.20999 1.17315 1.21412 0.91773 0.92976 1.49434 0.94764 1.19545 0.94245 0.94515 0.95998 1.20902 0.93822 0.95929 0.97561 0.93203 1.21465 0.99830 0.96130 0.96765 1.21586 0.95306 0.95998 1.01977 1.22052 0.95531 0.99565 0.89420 1.62170 1.13795 1.16061 1.33929 1.23333 0.86732 0.98612 0.97927 1.22995 0.98710 0.99828 0.95296 1.22723 0.97154 0.99046 0.97876 1.22973 0.98700 0.95370 0.99194 1.21993 0.94585 0.88989 1.00052 0.92633 0.96664 0.96716 0.93267 0.94010 0.90265 0.92153 0.95349 0.88962 0.92093 0.90416 0.91818 0.89252 0.90297 0.90629 0.89629 0.91345 0.95567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.96 13.96 21.45 0.30 -60.66 16 2 C 0.00 0.19 5.47 84.65 0.46 0.65 16 3 Si 0.95 45.35 27.47 68.60 1.88 47.23 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 6 H -0.25 -11.16 6.54 99.48 0.65 -10.51 16 7 C -0.52 -30.47 9.00 25.60 0.23 -30.24 16 8 H 0.03 2.22 7.32 -2.91 -0.02 2.20 16 9 C -0.01 -0.25 3.52 29.85 0.10 -0.15 16 10 C -0.06 -2.59 2.30 -10.74 -0.02 -2.61 16 11 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 12 C -0.10 -4.00 5.06 30.67 0.16 -3.84 16 13 C -0.11 -3.30 6.09 30.65 0.19 -3.11 16 14 C 0.06 1.61 5.25 86.32 0.45 2.06 16 15 N -0.54 -15.22 4.63 -868.01 -4.02 -19.24 16 16 C 0.04 0.96 3.26 45.45 0.15 1.11 16 17 C -0.13 -2.72 7.88 31.18 0.25 -2.47 16 18 C -0.13 -2.05 8.09 31.18 0.25 -1.79 16 19 C -0.12 -2.20 6.46 31.12 0.20 -2.00 16 20 C 0.07 2.41 4.72 86.33 0.41 2.82 16 21 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 22 H 0.02 0.73 7.20 -2.39 -0.02 0.71 16 23 H 0.01 0.69 7.57 -2.38 -0.02 0.67 16 24 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.04 1.85 7.04 -2.39 -0.02 1.83 16 26 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.03 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.09 1.98 6.62 -2.39 -0.02 1.96 16 30 H 0.06 1.40 8.11 -2.39 -0.02 1.38 16 31 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.09 1.59 7.70 -2.39 -0.02 1.57 16 37 H 0.07 2.27 8.12 -2.39 -0.02 2.25 16 38 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -65.36 291.44 1.92 -63.44 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 0.93 Total: 8.81 kcal Atomic # 6 Polarization: -42.41 SS G_CDS: 2.82 Total: -39.59 kcal Atomic # 7 Polarization: -76.18 SS G_CDS: -3.72 Total: -79.90 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.88 Total: 47.23 kcal Total: -65.36 1.92 -63.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260458336.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.534 kcal (2) G-P(sol) polarization free energy of solvation -65.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds