Wall clock time and date at job start Mon Mar 30 2020 03:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99729 * 2 1 4 4 H 1.48502 * 109.47138 * 269.99778 * 3 2 1 5 5 H 1.48494 * 109.47371 * 29.99634 * 3 2 1 6 6 H 1.48506 * 109.47242 * 150.00103 * 3 2 1 7 7 C 1.37875 * 120.00026 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99910 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00068 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46979 * 180.02562 * 9 7 2 11 11 H 1.09006 * 112.95660 * 297.13984 * 10 9 7 12 12 C 1.53941 * 113.76017 * 165.49415 * 10 9 7 13 13 C 1.53934 * 86.34005 * 221.95736 * 12 10 9 14 14 N 1.47954 * 113.76313 * 68.93174 * 10 9 7 15 15 C 1.46900 * 111.00070 * 251.89993 * 14 10 9 16 16 C 1.53001 * 109.47199 * 304.09448 * 15 14 10 17 17 C 1.52995 * 109.47034 * 179.97438 * 16 15 14 18 18 C 1.53001 * 109.47511 * 59.99885 * 17 16 15 19 19 C 1.53001 * 109.47065 * 300.00095 * 18 17 16 20 20 C 1.52998 * 109.47350 * 184.08893 * 15 14 10 21 21 H 0.96994 * 120.00275 * 0.02562 * 1 2 3 22 22 H 1.08990 * 109.47394 * 59.99973 * 9 7 2 23 23 H 1.09004 * 109.46828 * 299.99261 * 9 7 2 24 24 H 1.09001 * 113.72959 * 336.31865 * 12 10 9 25 25 H 1.08999 * 113.73291 * 107.59797 * 12 10 9 26 26 H 1.09005 * 113.75656 * 138.03353 * 13 12 10 27 27 H 1.08998 * 113.76002 * 269.29219 * 13 12 10 28 28 H 1.09005 * 109.47040 * 64.09222 * 15 14 10 29 29 H 1.09005 * 109.46940 * 299.99835 * 16 15 14 30 30 H 1.08992 * 109.47260 * 59.99686 * 16 15 14 31 31 H 1.08998 * 109.47531 * 299.99567 * 17 16 15 32 32 H 1.09002 * 109.47404 * 180.02562 * 17 16 15 33 33 H 1.08995 * 109.47528 * 180.02562 * 18 17 16 34 34 H 1.09005 * 109.47006 * 59.99767 * 18 17 16 35 35 H 1.09005 * 109.46940 * 299.99712 * 19 18 17 36 36 H 1.09002 * 109.47386 * 179.97438 * 19 18 17 37 37 H 1.09000 * 109.47331 * 300.00285 * 20 15 14 38 38 H 1.09005 * 109.46781 * 60.00170 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 1 2.8704 -3.6880 -0.8909 12 6 1.6115 -5.0197 0.3548 13 6 2.8649 -5.2706 1.2124 14 7 3.0018 -3.7983 1.2661 15 6 4.4025 -3.3930 1.0878 16 6 5.0293 -4.2088 -0.0447 17 6 6.4879 -3.7863 -0.2308 18 6 7.2607 -4.0360 1.0658 19 6 6.6340 -3.2202 2.1983 20 6 5.1749 -3.6432 2.3846 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8896 23 1 0.6242 -2.5567 0.8904 24 1 0.6923 -4.9371 0.9349 25 1 1.5193 -5.6952 -0.4956 26 1 2.6516 -5.7272 2.1790 27 1 3.6719 -5.7691 0.6755 28 1 4.4451 -2.3327 0.8384 29 1 4.9868 -5.2691 0.2047 30 1 4.4791 -4.0306 -0.9685 31 1 6.5301 -2.7261 -0.4804 32 1 6.9344 -4.3671 -1.0379 33 1 8.2998 -3.7346 0.9334 34 1 7.2186 -5.0963 1.3154 35 1 6.6761 -2.1600 1.9487 36 1 7.1842 -3.3985 3.1222 37 1 4.7284 -3.0620 3.1913 38 1 5.1324 -4.7035 2.6340 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260461632.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:55 Heat of formation + Delta-G solvation = 14.297089 kcal Electronic energy + Delta-G solvation = -16219.602794 eV Core-core repulsion = 13869.109607 eV Total energy + Delta-G solvation = -2350.493187 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.14721 -36.91920 -32.88817 -30.89351 -30.50841 -29.02661 -26.16625 -24.58885 -22.55654 -21.80020 -21.29754 -19.49706 -18.00000 -16.31116 -16.04089 -14.92536 -14.53981 -14.17282 -14.04079 -13.67655 -13.35801 -13.10005 -12.34550 -12.15920 -11.96404 -11.39138 -11.30285 -11.18141 -10.96925 -10.84808 -10.69925 -10.49922 -10.37459 -10.29935 -9.97379 -9.84894 -9.63372 -9.09765 -8.87369 -8.26854 -7.78977 -5.90461 -3.90124 3.36165 3.42637 3.45925 4.51874 4.58993 4.89387 4.98618 5.11332 5.28753 5.37406 5.43438 5.46403 5.48513 5.69888 5.73844 5.77760 5.82265 5.86344 6.01581 6.09043 6.20541 6.21210 6.30541 6.33467 6.35114 6.41309 6.46448 6.60532 6.69934 6.79386 6.99749 7.26835 7.69631 7.74546 8.06805 8.14854 8.52923 9.14128 9.71602 11.21240 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.024250 B = 0.009613 C = 0.007639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.351883 B = 2912.110495 C = 3664.745990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.887 3.113 4 H -0.283 1.283 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.501 4.501 8 H 0.053 0.947 9 C 0.038 3.962 10 C 0.045 3.955 11 H 0.068 0.932 12 C -0.150 4.150 13 C -0.019 4.019 14 N -0.454 5.454 15 C 0.053 3.947 16 C -0.156 4.156 17 C -0.114 4.114 18 C -0.117 4.117 19 C -0.119 4.119 20 C -0.104 4.104 21 H 0.258 0.742 22 H 0.019 0.981 23 H 0.025 0.975 24 H 0.084 0.916 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.091 0.909 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.107 -9.667 1.450 14.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.715 3.285 4 H -0.209 1.209 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.539 4.539 8 H 0.071 0.929 9 C 0.001 3.999 10 C -0.063 4.063 11 H 0.086 0.914 12 C -0.187 4.187 13 C -0.148 4.148 14 N -0.176 5.176 15 C -0.056 4.056 16 C -0.195 4.195 17 C -0.153 4.153 18 C -0.154 4.154 19 C -0.157 4.157 20 C -0.142 4.142 21 H 0.068 0.932 22 H 0.037 0.963 23 H 0.043 0.957 24 H 0.103 0.897 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.109 0.891 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.748 -9.167 2.052 14.274 hybrid contribution 0.849 0.613 -0.709 1.265 sum 11.597 -8.554 1.343 14.473 Atomic orbital electron populations 1.69955 1.05951 1.26311 1.51631 1.24977 0.94776 0.98974 0.95799 0.86678 0.79950 0.83999 0.77876 1.20907 1.21337 1.19980 1.21110 0.92753 0.90782 1.49286 0.92908 1.18990 0.92989 0.90624 0.97286 1.23692 0.95801 0.95891 0.90955 0.91449 1.23455 0.98132 0.98091 0.99071 1.24075 0.97733 0.93040 0.99957 1.68778 1.08732 1.07504 1.32548 1.22109 0.89475 1.00722 0.93311 1.22352 0.96149 1.00488 1.00465 1.21461 0.95357 1.01525 0.96920 1.21525 0.98539 0.99918 0.95455 1.21543 0.96116 1.00170 0.97871 1.21452 0.93993 1.00806 0.97964 0.93195 0.96279 0.95705 0.89724 0.92514 0.90860 0.91219 0.89099 0.91620 0.91329 0.91902 0.92617 0.92564 0.92456 0.91908 0.92420 0.91403 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.43 13.29 55.43 0.74 -26.69 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.50 -14.19 9.05 -34.44 -0.31 -14.50 16 8 H 0.05 1.46 6.08 -52.48 -0.32 1.14 16 9 C 0.04 1.00 5.02 -27.88 -0.14 0.86 16 10 C 0.04 0.94 3.00 -66.65 -0.20 0.74 16 11 H 0.07 1.38 5.63 -51.93 -0.29 1.09 16 12 C -0.15 -2.61 7.85 -25.80 -0.20 -2.82 16 13 C -0.02 -0.31 7.17 -2.77 -0.02 -0.33 16 14 N -0.45 -8.87 5.96 -222.74 -1.33 -10.20 16 15 C 0.05 0.93 2.38 -67.71 -0.16 0.77 16 16 C -0.16 -2.33 4.28 -26.73 -0.11 -2.45 16 17 C -0.11 -1.49 5.92 -26.73 -0.16 -1.65 16 18 C -0.12 -1.37 5.92 -26.73 -0.16 -1.53 16 19 C -0.12 -1.54 5.92 -26.70 -0.16 -1.69 16 20 C -0.10 -1.58 5.34 -26.71 -0.14 -1.72 16 21 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 22 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 23 H 0.02 0.70 8.12 -51.93 -0.42 0.28 16 24 H 0.08 1.54 8.08 -51.93 -0.42 1.12 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.07 1.01 4.97 -51.93 -0.26 0.75 16 28 H 0.09 1.88 6.50 -51.93 -0.34 1.54 16 29 H 0.07 0.91 5.66 -51.93 -0.29 0.62 16 30 H 0.07 1.11 5.91 -51.93 -0.31 0.80 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.05 0.77 7.76 -51.93 -0.40 0.37 16 LS Contribution 285.87 15.07 4.31 4.31 Total: -1.00 -29.84 285.87 -9.58 -39.42 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -6.41 Total: -1.10 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: -1.86 Total: -22.82 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: -0.59 Total: -36.89 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.84 -9.58 -39.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260461632.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.716 kcal (2) G-P(sol) polarization free energy of solvation -29.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds