Wall clock time and date at job start Mon Mar 30 2020 03:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99729 * 2 1 4 4 H 1.48502 * 109.47138 * 269.99778 * 3 2 1 5 5 H 1.48494 * 109.47371 * 29.99634 * 3 2 1 6 6 H 1.48506 * 109.47242 * 150.00103 * 3 2 1 7 7 C 1.37875 * 120.00026 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99910 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00068 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46979 * 180.02562 * 9 7 2 11 11 H 1.09006 * 112.95660 * 297.13984 * 10 9 7 12 12 C 1.53941 * 113.76017 * 165.49415 * 10 9 7 13 13 C 1.53934 * 86.34005 * 221.95736 * 12 10 9 14 14 N 1.47954 * 113.76313 * 68.93174 * 10 9 7 15 15 C 1.46900 * 111.00070 * 251.89993 * 14 10 9 16 16 C 1.53001 * 109.47199 * 304.09448 * 15 14 10 17 17 C 1.52995 * 109.47034 * 179.97438 * 16 15 14 18 18 C 1.53001 * 109.47511 * 59.99885 * 17 16 15 19 19 C 1.53001 * 109.47065 * 300.00095 * 18 17 16 20 20 C 1.52998 * 109.47350 * 184.08893 * 15 14 10 21 21 H 0.96994 * 120.00275 * 0.02562 * 1 2 3 22 22 H 1.08990 * 109.47394 * 59.99973 * 9 7 2 23 23 H 1.09004 * 109.46828 * 299.99261 * 9 7 2 24 24 H 1.09001 * 113.72959 * 336.31865 * 12 10 9 25 25 H 1.08999 * 113.73291 * 107.59797 * 12 10 9 26 26 H 1.09005 * 113.75656 * 138.03353 * 13 12 10 27 27 H 1.08998 * 113.76002 * 269.29219 * 13 12 10 28 28 H 1.09005 * 109.47040 * 64.09222 * 15 14 10 29 29 H 1.09005 * 109.46940 * 299.99835 * 16 15 14 30 30 H 1.08992 * 109.47260 * 59.99686 * 16 15 14 31 31 H 1.08998 * 109.47531 * 299.99567 * 17 16 15 32 32 H 1.09002 * 109.47404 * 180.02562 * 17 16 15 33 33 H 1.08995 * 109.47528 * 180.02562 * 18 17 16 34 34 H 1.09005 * 109.47006 * 59.99767 * 18 17 16 35 35 H 1.09005 * 109.46940 * 299.99712 * 19 18 17 36 36 H 1.09002 * 109.47386 * 179.97438 * 19 18 17 37 37 H 1.09000 * 109.47331 * 300.00285 * 20 15 14 38 38 H 1.09005 * 109.46781 * 60.00170 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 1 2.8704 -3.6880 -0.8909 12 6 1.6115 -5.0197 0.3548 13 6 2.8649 -5.2706 1.2124 14 7 3.0018 -3.7983 1.2661 15 6 4.4025 -3.3930 1.0878 16 6 5.0293 -4.2088 -0.0447 17 6 6.4879 -3.7863 -0.2308 18 6 7.2607 -4.0360 1.0658 19 6 6.6340 -3.2202 2.1983 20 6 5.1749 -3.6432 2.3846 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8896 23 1 0.6242 -2.5567 0.8904 24 1 0.6923 -4.9371 0.9349 25 1 1.5193 -5.6952 -0.4956 26 1 2.6516 -5.7272 2.1790 27 1 3.6719 -5.7691 0.6755 28 1 4.4451 -2.3327 0.8384 29 1 4.9868 -5.2691 0.2047 30 1 4.4791 -4.0306 -0.9685 31 1 6.5301 -2.7261 -0.4804 32 1 6.9344 -4.3671 -1.0379 33 1 8.2998 -3.7346 0.9334 34 1 7.2186 -5.0963 1.3154 35 1 6.6761 -2.1600 1.9487 36 1 7.1842 -3.3985 3.1222 37 1 4.7284 -3.0620 3.1913 38 1 5.1324 -4.7035 2.6340 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260461632.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:55 Heat of formation + Delta-G solvation = -4.449797 kcal Electronic energy + Delta-G solvation = -16220.415720 eV Core-core repulsion = 13869.109607 eV Total energy + Delta-G solvation = -2351.306113 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.55546 -38.13391 -35.08093 -32.23639 -31.63353 -30.95886 -27.48269 -26.52155 -23.72900 -23.53541 -22.52999 -20.78071 -19.49793 -18.38593 -17.48309 -16.64875 -16.14512 -15.39879 -15.29467 -15.14277 -14.66858 -14.53286 -14.05082 -13.51805 -13.27757 -13.10953 -13.03961 -12.82537 -12.55143 -12.37785 -12.21116 -12.10359 -11.83364 -11.54843 -11.30496 -11.19009 -11.13722 -10.80083 -10.77762 -10.49979 -9.25392 -8.15724 -6.23096 1.35713 1.37428 1.47923 2.40893 3.13158 3.22598 3.75897 3.83317 3.88418 3.99693 4.12250 4.26098 4.33179 4.46098 4.50756 4.59253 4.63933 4.71237 4.82967 4.83962 4.96954 4.99031 5.04045 5.13455 5.14715 5.23808 5.29473 5.30760 5.38739 5.45064 5.47046 5.58009 5.65894 5.85074 5.93086 6.30981 6.51587 6.90771 7.43173 8.96352 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.024250 B = 0.009613 C = 0.007639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.351883 B = 2912.110495 C = 3664.745990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.956 3.044 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.512 4.512 8 H 0.054 0.946 9 C 0.044 3.956 10 C 0.040 3.960 11 H 0.072 0.928 12 C -0.142 4.142 13 C -0.002 4.002 14 N -0.485 5.485 15 C 0.053 3.947 16 C -0.149 4.149 17 C -0.114 4.114 18 C -0.111 4.111 19 C -0.117 4.117 20 C -0.099 4.099 21 H 0.261 0.739 22 H -0.006 1.006 23 H -0.010 1.010 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.048 0.952 29 H 0.085 0.915 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.078 0.922 37 H 0.046 0.954 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.534 -11.020 1.586 17.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.200 4.200 3 Si 0.781 3.219 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.551 4.551 8 H 0.072 0.928 9 C 0.007 3.993 10 C -0.068 4.068 11 H 0.090 0.910 12 C -0.179 4.179 13 C -0.130 4.130 14 N -0.207 5.207 15 C -0.057 4.057 16 C -0.187 4.187 17 C -0.152 4.152 18 C -0.149 4.149 19 C -0.155 4.155 20 C -0.137 4.137 21 H 0.070 0.930 22 H 0.012 0.988 23 H 0.008 0.992 24 H 0.090 0.910 25 H 0.102 0.898 26 H 0.106 0.894 27 H 0.113 0.887 28 H 0.066 0.934 29 H 0.103 0.897 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.065 0.935 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.189 -10.531 2.188 17.019 hybrid contribution 0.054 1.032 -0.736 1.269 sum 13.243 -9.499 1.451 16.362 Atomic orbital electron populations 1.70091 1.07602 1.27350 1.52732 1.25884 0.95683 1.02928 0.95472 0.85587 0.78650 0.79276 0.78399 1.19697 1.20870 1.19293 1.21471 0.92980 0.91980 1.48637 0.92832 1.18820 0.93490 0.92698 0.94285 1.23470 0.95703 0.95478 0.92178 0.90999 1.23378 0.98230 0.96212 1.00127 1.24095 0.97336 0.90900 1.00707 1.68687 1.10073 1.10335 1.31622 1.22062 0.89130 0.98723 0.95742 1.22262 0.97048 1.00963 0.98415 1.21475 0.94299 1.00860 0.98590 1.21506 0.99042 1.00529 0.93778 1.21542 0.94813 0.99563 0.99588 1.21408 0.95010 1.01438 0.95827 0.93049 0.98814 0.99181 0.90998 0.89842 0.89429 0.88717 0.93398 0.89652 0.92966 0.93530 0.90564 0.90737 0.90912 0.93406 0.90364 0.93471 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.01 13.29 21.45 0.28 -58.72 16 2 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 3 Si 0.96 46.27 29.54 68.60 2.03 48.30 16 4 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 5 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.51 -30.09 9.05 25.60 0.23 -29.86 16 8 H 0.05 3.07 6.08 -2.91 -0.02 3.06 16 9 C 0.04 2.44 5.02 29.85 0.15 2.59 16 10 C 0.04 1.71 3.00 45.02 0.14 1.85 16 11 H 0.07 2.96 5.63 -2.38 -0.01 2.95 16 12 C -0.14 -4.80 7.85 31.24 0.25 -4.56 16 13 C 0.00 -0.07 7.17 86.41 0.62 0.55 16 14 N -0.49 -18.87 5.96 -858.62 -5.12 -23.99 16 15 C 0.05 1.82 2.38 44.91 0.11 1.93 16 16 C -0.15 -4.14 4.28 30.59 0.13 -4.01 16 17 C -0.11 -2.68 5.92 30.59 0.18 -2.50 16 18 C -0.11 -2.21 5.92 30.59 0.18 -2.03 16 19 C -0.12 -2.76 5.92 30.61 0.18 -2.58 16 20 C -0.10 -2.85 5.34 30.61 0.16 -2.69 16 21 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 22 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 23 H -0.01 -0.62 8.12 -2.38 -0.02 -0.64 16 24 H 0.07 2.61 8.08 -2.39 -0.02 2.59 16 25 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.09 2.39 8.14 -2.38 -0.02 2.37 16 27 H 0.10 2.36 4.97 -2.39 -0.01 2.34 16 28 H 0.05 2.05 6.50 -2.38 -0.02 2.03 16 29 H 0.09 2.04 5.66 -2.38 -0.01 2.02 16 30 H 0.05 1.62 5.91 -2.39 -0.01 1.61 16 31 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.05 1.52 8.14 -2.39 -0.02 1.51 16 38 H 0.07 1.80 7.76 -2.38 -0.02 1.78 16 Total: -1.00 -66.70 285.87 1.00 -65.71 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 1.01 Total: 9.74 kcal Atomic # 6 Polarization: -43.81 SS G_CDS: 2.79 Total: -41.03 kcal Atomic # 7 Polarization: -77.88 SS G_CDS: -4.83 Total: -82.71 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -66.70 1.00 -65.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260461632.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.257 kcal (2) G-P(sol) polarization free energy of solvation -66.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds