Wall clock time and date at job start Mon Mar 30 2020 03:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 120.00279 * 2 1 4 4 H 1.48488 * 109.47191 * 269.99797 * 3 2 1 5 5 H 1.48503 * 109.46998 * 30.00053 * 3 2 1 6 6 H 1.48503 * 109.47142 * 149.99588 * 3 2 1 7 7 C 1.37884 * 119.99623 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99609 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99864 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46891 * 184.75439 * 9 7 2 11 11 H 1.09003 * 109.47391 * 52.74489 * 10 9 7 12 12 C 1.53005 * 109.47145 * 292.74396 * 10 9 7 13 13 C 1.52996 * 117.49472 * 3.59903 * 12 10 9 14 14 C 1.52991 * 117.49682 * 294.93868 * 12 10 9 15 15 C 1.53003 * 109.47369 * 172.74492 * 10 9 7 16 16 H 1.08997 * 109.49820 * 59.91926 * 15 10 9 17 17 C 1.53121 * 109.50000 * 299.80402 * 15 10 9 18 18 C 1.53121 * 109.16012 * 182.40313 * 17 15 10 19 19 C 1.53039 * 109.27482 * 57.65291 * 18 17 15 20 20 N 1.46845 * 109.52330 * 300.81995 * 19 18 17 21 21 C 1.46846 * 111.20041 * 61.74733 * 20 19 18 22 22 H 0.97003 * 119.99180 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47092 * 64.75290 * 9 7 2 24 24 H 1.08997 * 109.46919 * 304.74911 * 9 7 2 25 25 H 1.08999 * 115.54835 * 149.26587 * 12 10 9 26 26 H 1.08997 * 117.50376 * 359.97438 * 13 12 10 27 27 H 1.09004 * 117.49755 * 145.02312 * 13 12 10 28 28 H 1.09001 * 117.49680 * 214.97378 * 14 12 10 29 29 H 1.09000 * 117.50051 * 359.97438 * 14 12 10 30 30 H 1.09003 * 109.52290 * 302.30488 * 17 15 10 31 31 H 1.09005 * 109.52334 * 62.43433 * 17 15 10 32 32 H 1.08996 * 109.50279 * 177.59252 * 18 17 15 33 33 H 1.09004 * 109.50129 * 297.71728 * 18 17 15 34 34 H 1.09007 * 109.46092 * 180.80823 * 19 18 17 35 35 H 1.08997 * 109.46364 * 60.83810 * 19 18 17 36 36 H 1.00905 * 111.00168 * 297.64443 * 20 19 18 37 37 H 1.09002 * 109.46130 * 58.26587 * 21 20 19 38 38 H 1.08997 * 109.46670 * 178.25129 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2408 -3.6596 0.1207 11 1 2.8891 -3.4966 0.9817 12 6 3.0901 -3.7392 -1.1494 13 6 2.8758 -2.6587 -2.2112 14 6 2.3747 -4.0840 -2.4571 15 6 1.4714 -4.9696 0.3026 16 1 0.8219 -5.1324 -0.5574 17 6 0.6249 -4.8926 1.5762 18 6 -0.0948 -6.2282 1.7829 19 6 0.9401 -7.3530 1.8603 20 7 1.7234 -7.3855 0.6186 21 6 2.4608 -6.1308 0.4229 22 1 -0.4849 0.8401 -0.0004 23 1 0.6900 -2.5948 -0.9292 24 1 0.5617 -2.5207 0.8446 25 1 4.1030 -4.1186 -1.0146 26 1 2.1296 -1.8914 -2.0052 27 1 3.7477 -2.3276 -2.7754 28 1 2.9171 -4.6899 -3.1829 29 1 1.2990 -4.2546 -2.4125 30 1 1.2704 -4.6906 2.4310 31 1 -0.1098 -4.0933 1.4776 32 1 -0.6654 -6.1943 2.7109 33 1 -0.7693 -6.4113 0.9465 34 1 0.4302 -8.3072 1.9931 35 1 1.6059 -7.1765 2.7051 36 1 1.1341 -7.5862 -0.1755 37 1 3.1194 -5.9600 1.2745 38 1 3.0552 -6.1971 -0.4883 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260523461.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:57 Heat of formation + Delta-G solvation = 0.208333 kcal Electronic energy + Delta-G solvation = -16160.330149 eV Core-core repulsion = 13809.226028 eV Total energy + Delta-G solvation = -2351.104121 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.21854 -36.90879 -33.00168 -32.11250 -30.99658 -28.65849 -25.39656 -23.56964 -22.12991 -21.73847 -21.35168 -19.93310 -17.89366 -16.29258 -15.77238 -15.41681 -14.53050 -14.36677 -14.23043 -13.64493 -13.32529 -12.46004 -12.43041 -11.94276 -11.81647 -11.66741 -11.29411 -10.96280 -10.90079 -10.77868 -10.60783 -10.51474 -10.09805 -9.87131 -9.75160 -9.43122 -9.25497 -9.06767 -8.80214 -8.32056 -7.95511 -5.98744 -3.97031 3.31867 3.38963 3.42255 4.46554 4.54803 4.68704 5.06278 5.24077 5.30708 5.36161 5.44063 5.64640 5.70228 5.71948 5.86617 5.89893 5.93119 6.06163 6.11297 6.15173 6.33128 6.33698 6.46811 6.53665 6.64998 6.71518 6.80648 6.83686 7.00889 7.22655 7.25409 7.47317 7.56308 7.75953 7.85523 8.02299 8.47124 9.07964 9.63380 11.12041 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.033959 B = 0.008071 C = 0.007041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.317157 B = 3468.337885 C = 3976.033455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.886 3.114 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.504 4.504 8 H 0.057 0.943 9 C 0.025 3.975 10 C -0.046 4.046 11 H 0.059 0.941 12 C -0.134 4.134 13 C -0.171 4.171 14 C -0.196 4.196 15 C -0.110 4.110 16 H 0.063 0.937 17 C -0.116 4.116 18 C -0.157 4.157 19 C 0.057 3.943 20 N -0.690 5.690 21 C 0.063 3.937 22 H 0.259 0.741 23 H 0.013 0.987 24 H 0.022 0.978 25 H 0.081 0.919 26 H 0.140 0.860 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.336 0.664 37 H 0.066 0.934 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.032 -11.118 0.419 11.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.714 3.286 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.543 4.543 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.066 4.066 11 H 0.078 0.922 12 C -0.152 4.152 13 C -0.207 4.207 14 C -0.233 4.233 15 C -0.130 4.130 16 H 0.081 0.919 17 C -0.154 4.154 18 C -0.196 4.196 19 C -0.073 4.073 20 N -0.317 5.317 21 C -0.067 4.067 22 H 0.069 0.931 23 H 0.031 0.969 24 H 0.041 0.959 25 H 0.099 0.901 26 H 0.157 0.843 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.103 0.897 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.153 0.847 37 H 0.084 0.916 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.437 -11.351 0.721 11.632 hybrid contribution -0.285 1.659 -0.277 1.706 sum 2.152 -9.693 0.444 9.939 Atomic orbital electron populations 1.69967 1.05975 1.26417 1.51246 1.25005 0.94763 0.99027 0.95804 0.86687 0.79931 0.83912 0.78078 1.20741 1.21418 1.19949 1.21241 0.93157 0.90733 1.49143 0.92445 1.19277 0.93736 0.91083 0.97109 1.20770 0.96739 0.94210 0.94838 0.92227 1.22074 0.98267 1.04308 0.90542 1.23534 1.03775 0.92889 1.00544 1.22862 0.99919 1.00683 0.99844 1.21850 0.97294 0.96592 0.97306 0.91889 1.21677 0.99398 0.96444 0.97863 1.22278 0.98737 0.97014 1.01594 1.21992 0.94586 0.97298 0.93391 1.60761 1.31363 1.34547 1.05076 1.22103 0.95932 0.86852 1.01780 0.93145 0.96870 0.95932 0.90079 0.84276 0.91213 0.90806 0.89652 0.92354 0.90773 0.92062 0.92414 0.91548 0.91301 0.84731 0.91581 0.90774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.23 13.29 55.43 0.74 -25.49 16 2 C 0.05 1.52 5.46 -17.81 -0.10 1.42 16 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.50 -13.47 6.27 -34.44 -0.22 -13.69 16 8 H 0.06 1.53 7.36 -52.49 -0.39 1.14 16 9 C 0.02 0.60 3.78 -27.88 -0.11 0.50 16 10 C -0.05 -0.92 1.76 -90.62 -0.16 -1.08 16 11 H 0.06 1.23 8.13 -51.93 -0.42 0.80 16 12 C -0.13 -2.47 4.45 -90.62 -0.40 -2.87 16 13 C -0.17 -3.39 8.65 -26.70 -0.23 -3.62 16 14 C -0.20 -3.40 9.36 -26.70 -0.25 -3.65 16 15 C -0.11 -1.84 1.70 -90.54 -0.15 -1.99 16 16 H 0.06 1.10 6.99 -51.93 -0.36 0.73 16 17 C -0.12 -1.91 4.88 -26.61 -0.13 -2.04 16 18 C -0.16 -2.10 6.08 -26.65 -0.16 -2.27 16 19 C 0.06 0.71 6.55 -3.83 -0.03 0.68 16 20 N -0.69 -9.15 6.87 -113.82 -0.78 -9.93 16 21 C 0.06 0.92 5.58 -3.84 -0.02 0.90 16 22 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 23 H 0.01 0.34 6.63 -51.93 -0.34 0.00 16 24 H 0.02 0.59 6.13 -51.93 -0.32 0.27 16 25 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 26 H 0.14 3.29 4.69 -51.93 -0.24 3.04 16 27 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.09 1.54 7.05 -51.93 -0.37 1.17 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 1.39 6.42 -51.93 -0.33 1.06 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.72 8.14 -51.92 -0.42 0.29 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.34 4.15 8.86 -39.29 -0.35 3.81 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.07 1.08 7.24 -51.93 -0.38 0.71 16 LS Contribution 286.63 15.07 4.32 4.32 Total: -1.00 -27.63 286.63 -9.14 -36.77 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -6.44 Total: 5.70 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: -1.95 Total: -27.71 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: -0.05 Total: -35.43 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -27.63 -9.14 -36.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260523461.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.979 kcal (2) G-P(sol) polarization free energy of solvation -27.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds