Wall clock time and date at job start Mon Mar 30 2020 03:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 120.00279 * 2 1 4 4 H 1.48488 * 109.47191 * 269.99797 * 3 2 1 5 5 H 1.48503 * 109.46998 * 30.00053 * 3 2 1 6 6 H 1.48503 * 109.47142 * 149.99588 * 3 2 1 7 7 C 1.37884 * 119.99623 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99609 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99864 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46891 * 184.75439 * 9 7 2 11 11 H 1.09003 * 109.47391 * 52.74489 * 10 9 7 12 12 C 1.53005 * 109.47145 * 292.74396 * 10 9 7 13 13 C 1.52996 * 117.49472 * 3.59903 * 12 10 9 14 14 C 1.52991 * 117.49682 * 294.93868 * 12 10 9 15 15 C 1.53003 * 109.47369 * 172.74492 * 10 9 7 16 16 H 1.08997 * 109.49820 * 59.91926 * 15 10 9 17 17 C 1.53121 * 109.50000 * 299.80402 * 15 10 9 18 18 C 1.53121 * 109.16012 * 182.40313 * 17 15 10 19 19 C 1.53039 * 109.27482 * 57.65291 * 18 17 15 20 20 N 1.46845 * 109.52330 * 300.81995 * 19 18 17 21 21 C 1.46846 * 111.20041 * 61.74733 * 20 19 18 22 22 H 0.97003 * 119.99180 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47092 * 64.75290 * 9 7 2 24 24 H 1.08997 * 109.46919 * 304.74911 * 9 7 2 25 25 H 1.08999 * 115.54835 * 149.26587 * 12 10 9 26 26 H 1.08997 * 117.50376 * 359.97438 * 13 12 10 27 27 H 1.09004 * 117.49755 * 145.02312 * 13 12 10 28 28 H 1.09001 * 117.49680 * 214.97378 * 14 12 10 29 29 H 1.09000 * 117.50051 * 359.97438 * 14 12 10 30 30 H 1.09003 * 109.52290 * 302.30488 * 17 15 10 31 31 H 1.09005 * 109.52334 * 62.43433 * 17 15 10 32 32 H 1.08996 * 109.50279 * 177.59252 * 18 17 15 33 33 H 1.09004 * 109.50129 * 297.71728 * 18 17 15 34 34 H 1.09007 * 109.46092 * 180.80823 * 19 18 17 35 35 H 1.08997 * 109.46364 * 60.83810 * 19 18 17 36 36 H 1.00905 * 111.00168 * 297.64443 * 20 19 18 37 37 H 1.09002 * 109.46130 * 58.26587 * 21 20 19 38 38 H 1.08997 * 109.46670 * 178.25129 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2408 -3.6596 0.1207 11 1 2.8891 -3.4966 0.9817 12 6 3.0901 -3.7392 -1.1494 13 6 2.8758 -2.6587 -2.2112 14 6 2.3747 -4.0840 -2.4571 15 6 1.4714 -4.9696 0.3026 16 1 0.8219 -5.1324 -0.5574 17 6 0.6249 -4.8926 1.5762 18 6 -0.0948 -6.2282 1.7829 19 6 0.9401 -7.3530 1.8603 20 7 1.7234 -7.3855 0.6186 21 6 2.4608 -6.1308 0.4229 22 1 -0.4849 0.8401 -0.0004 23 1 0.6900 -2.5948 -0.9292 24 1 0.5617 -2.5207 0.8446 25 1 4.1030 -4.1186 -1.0146 26 1 2.1296 -1.8914 -2.0052 27 1 3.7477 -2.3276 -2.7754 28 1 2.9171 -4.6899 -3.1829 29 1 1.2990 -4.2546 -2.4125 30 1 1.2704 -4.6906 2.4310 31 1 -0.1098 -4.0933 1.4776 32 1 -0.6654 -6.1943 2.7109 33 1 -0.7693 -6.4113 0.9465 34 1 0.4302 -8.3072 1.9931 35 1 1.6059 -7.1765 2.7051 36 1 1.1341 -7.5862 -0.1755 37 1 3.1194 -5.9600 1.2745 38 1 3.0552 -6.1971 -0.4883 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260523461.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:57 Heat of formation + Delta-G solvation = -16.050187 kcal Electronic energy + Delta-G solvation = -16161.035171 eV Core-core repulsion = 13809.226028 eV Total energy + Delta-G solvation = -2351.809143 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.60499 -38.29082 -34.95036 -33.64867 -32.17995 -30.43483 -27.08262 -25.04497 -23.44326 -23.39270 -22.77798 -21.21225 -19.47569 -18.38364 -17.14742 -16.72196 -16.47378 -15.67248 -15.43581 -15.15004 -14.70472 -14.26407 -13.77483 -13.52439 -13.35561 -13.03509 -12.92291 -12.67962 -12.48452 -12.23907 -12.17874 -11.94586 -11.61520 -11.51364 -11.27168 -11.20712 -10.89651 -10.81099 -10.43765 -10.37557 -9.15057 -8.13581 -6.17470 1.39010 1.39623 1.49816 2.43064 3.15301 3.22231 3.48950 3.85096 3.95087 4.06058 4.18100 4.30127 4.36946 4.39242 4.47947 4.58455 4.68009 4.74490 4.86201 4.95190 5.04255 5.09208 5.10278 5.15233 5.18126 5.25269 5.30341 5.37555 5.46971 5.56822 5.65764 5.80250 5.91443 5.94432 6.14138 6.36604 6.55486 6.95333 7.46163 8.97644 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.033959 B = 0.008071 C = 0.007041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.317157 B = 3468.337885 C = 3976.033455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.949 3.051 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.505 4.505 8 H 0.058 0.942 9 C 0.037 3.963 10 C -0.041 4.041 11 H 0.050 0.950 12 C -0.132 4.132 13 C -0.193 4.193 14 C -0.171 4.171 15 C -0.100 4.100 16 H 0.055 0.945 17 C -0.117 4.117 18 C -0.149 4.149 19 C 0.060 3.940 20 N -0.687 5.687 21 C 0.074 3.926 22 H 0.259 0.741 23 H -0.012 1.012 24 H -0.007 1.007 25 H 0.106 0.894 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.107 0.893 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.038 0.962 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.344 0.656 37 H 0.064 0.936 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.542 -12.806 0.179 13.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.198 4.198 3 Si 0.775 3.225 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.543 4.543 8 H 0.076 0.924 9 C 0.000 4.000 10 C -0.060 4.060 11 H 0.069 0.931 12 C -0.150 4.150 13 C -0.230 4.230 14 C -0.208 4.208 15 C -0.121 4.121 16 H 0.073 0.927 17 C -0.155 4.155 18 C -0.189 4.189 19 C -0.069 4.069 20 N -0.314 5.314 21 C -0.056 4.056 22 H 0.067 0.933 23 H 0.006 0.994 24 H 0.011 0.989 25 H 0.124 0.876 26 H 0.114 0.886 27 H 0.105 0.895 28 H 0.125 0.875 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.161 0.839 37 H 0.082 0.918 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.956 -13.053 0.480 13.648 hybrid contribution -0.797 2.183 -0.203 2.333 sum 3.159 -10.870 0.277 11.323 Atomic orbital electron populations 1.70101 1.07571 1.27135 1.52932 1.25811 0.95522 1.02634 0.95828 0.85672 0.78818 0.79693 0.78278 1.20075 1.21366 1.19003 1.21540 0.93217 0.91797 1.47730 0.92415 1.19089 0.93899 0.92621 0.94394 1.20622 0.95875 0.94006 0.95524 0.93135 1.22103 0.99279 1.03713 0.89877 1.23331 1.03753 0.93221 1.02699 1.22867 0.99580 0.98770 0.99551 1.21744 0.97420 0.95951 0.96947 0.92651 1.21632 0.98743 0.97394 0.97712 1.22228 0.98942 0.95428 1.02256 1.22041 0.94163 0.97766 0.92965 1.60772 1.31769 1.33095 1.05783 1.21956 0.95266 0.86271 1.02084 0.93265 0.99418 0.98896 0.87590 0.88619 0.89499 0.87462 0.90812 0.92854 0.94324 0.90957 0.92245 0.89084 0.91299 0.83874 0.91759 0.90017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.85 13.29 21.45 0.28 -56.56 16 2 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 3 Si 0.95 44.57 29.54 68.60 2.03 46.60 16 4 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 5 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 7 C -0.50 -27.72 6.27 25.60 0.16 -27.56 16 8 H 0.06 3.10 7.36 -2.91 -0.02 3.08 16 9 C 0.04 1.88 3.78 29.85 0.11 1.99 16 10 C -0.04 -1.63 1.76 -10.79 -0.02 -1.65 16 11 H 0.05 2.08 8.13 -2.39 -0.02 2.06 16 12 C -0.13 -4.66 4.45 -10.80 -0.05 -4.71 16 13 C -0.19 -7.57 8.65 30.62 0.26 -7.31 16 14 C -0.17 -5.61 9.36 30.62 0.29 -5.33 16 15 C -0.10 -3.29 1.70 -10.74 -0.02 -3.31 16 16 H 0.06 1.91 6.99 -2.39 -0.02 1.89 16 17 C -0.12 -3.90 4.88 30.68 0.15 -3.75 16 18 C -0.15 -3.79 6.08 30.65 0.19 -3.60 16 19 C 0.06 1.32 6.55 86.33 0.57 1.89 16 20 N -0.69 -16.14 6.87 -514.01 -3.53 -19.67 16 21 C 0.07 1.99 5.58 86.32 0.48 2.47 16 22 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 23 H -0.01 -0.69 6.63 -2.39 -0.02 -0.71 16 24 H -0.01 -0.41 6.13 -2.39 -0.01 -0.42 16 25 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 26 H 0.10 4.66 4.69 -2.39 -0.01 4.65 16 27 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 28 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 29 H 0.07 2.61 7.05 -2.39 -0.02 2.59 16 30 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.04 1.54 6.42 -2.38 -0.02 1.52 16 32 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.34 7.41 8.86 -89.69 -0.79 6.61 16 37 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.08 2.11 7.24 -2.39 -0.02 2.09 16 Total: -1.00 -61.03 286.63 1.60 -59.44 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.23 Total: 20.67 kcal Atomic # 6 Polarization: -53.06 SS G_CDS: 2.58 Total: -50.47 kcal Atomic # 7 Polarization: -72.99 SS G_CDS: -3.24 Total: -76.23 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -61.03 1.60 -59.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260523461.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.385 kcal (2) G-P(sol) polarization free energy of solvation -61.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds