Wall clock time and date at job start Mon Mar 30 2020 02:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46900 * 109.46773 * 2 1 4 4 C 1.46899 * 110.99736 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46824 * 324.99466 * 4 3 2 6 6 C 1.50695 * 109.47351 * 84.99637 * 4 3 2 7 7 H 1.08007 * 120.00378 * 239.99939 * 6 4 3 8 8 C 1.37880 * 120.00201 * 60.00175 * 6 4 3 9 9 N 1.31514 * 120.00202 * 179.97438 * 8 6 4 10 10 Si 1.86802 * 119.99611 * 359.97438 * 8 6 4 11 11 H 1.48500 * 109.47258 * 90.00247 * 10 8 6 12 12 H 1.48507 * 109.47081 * 210.00191 * 10 8 6 13 13 H 1.48498 * 109.47140 * 330.00054 * 10 8 6 14 14 C 1.50701 * 109.47195 * 204.99781 * 4 3 2 15 15 C 1.35320 * 126.12442 * 4.97634 * 14 4 3 16 16 C 1.39870 * 107.91564 * 180.02562 * 15 14 4 17 17 C 1.50706 * 125.89274 * 179.97438 * 16 15 14 18 18 N 1.30834 * 108.20400 * 0.25866 * 16 15 14 19 19 N 1.34947 * 126.12665 * 185.01331 * 14 4 3 20 20 C 1.46500 * 126.04042 * 359.96815 * 19 14 4 21 21 H 1.08995 * 109.47171 * 59.99935 * 1 2 3 22 22 H 1.08998 * 109.47407 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47100 * 299.99985 * 1 2 3 24 24 H 1.09003 * 109.46595 * 239.99879 * 2 1 3 25 25 H 1.08994 * 109.47032 * 119.99531 * 2 1 3 26 26 H 1.00899 * 111.00396 * 56.04349 * 3 2 1 27 27 H 0.97007 * 119.99616 * 179.97438 * 9 8 6 28 28 H 1.08001 * 126.03934 * 0.02562 * 15 14 4 29 29 H 1.08999 * 109.47015 * 90.00207 * 17 16 15 30 30 H 1.09000 * 109.46646 * 209.99359 * 17 16 15 31 31 H 1.09000 * 109.47248 * 330.00077 * 17 16 15 32 32 H 1.09005 * 109.47085 * 89.99692 * 20 19 14 33 33 H 1.08996 * 109.47009 * 210.00192 * 20 19 14 34 34 H 1.08999 * 109.46609 * 330.00098 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4881 1.4242 -0.0006 5 1 3.8740 0.5923 0.5886 6 6 3.9930 1.3140 -1.4162 7 1 4.6360 0.4932 -1.6979 8 6 3.6342 2.2610 -2.3519 9 7 4.0752 2.1651 -3.5871 10 14 2.5216 3.6803 -1.8649 11 1 3.3497 4.8195 -1.3942 12 1 1.7177 4.1046 -3.0393 13 1 1.6127 3.2451 -0.7741 14 6 3.9561 2.7248 0.5998 15 6 3.1700 3.6747 1.1574 16 6 3.9961 4.7171 1.5904 17 6 3.5393 5.9823 2.2700 18 7 5.2330 4.4068 1.2980 19 7 5.2342 3.1511 0.6770 20 6 6.4140 2.4305 0.1921 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5137 0.8900 26 1 1.6441 1.9013 0.7813 27 1 3.8224 2.8312 -4.2455 28 1 2.0949 3.6349 1.2515 29 1 3.5259 5.8305 3.3492 30 1 4.2250 6.7937 2.0257 31 1 2.5369 6.2377 1.9265 32 1 6.6094 2.7088 -0.8436 33 1 7.2759 2.6895 0.8068 34 1 6.2341 1.3572 0.2522 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260551009.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:42 Heat of formation + Delta-G solvation = 88.101748 kcal Electronic energy + Delta-G solvation = -16066.000887 eV Core-core repulsion = 13615.167767 eV Total energy + Delta-G solvation = -2450.833120 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.59168 -36.20320 -33.39590 -32.37525 -31.06038 -29.07855 -28.09878 -26.29560 -24.65289 -22.40615 -21.43958 -19.28738 -18.77445 -16.65138 -15.83425 -15.33627 -14.54229 -14.18313 -13.90320 -13.54609 -13.30624 -12.99138 -12.69939 -12.50083 -12.15802 -11.75969 -11.62088 -11.48476 -11.37073 -10.98443 -10.64116 -10.44501 -10.30506 -10.06115 -9.79539 -9.22912 -8.55750 -8.27120 -7.65528 -7.03302 -6.08991 -4.21643 2.70127 3.33164 3.49731 3.58743 3.69358 3.86724 4.69009 5.00443 5.21100 5.26716 5.56214 5.66908 5.74968 5.82932 5.91331 5.93953 6.00419 6.05829 6.17302 6.26484 6.29706 6.32329 6.43431 6.59562 6.67129 6.75044 6.88743 7.41776 7.49510 7.81112 7.95051 8.23258 8.49366 8.56311 8.84775 9.57727 10.98638 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.021692 B = 0.013659 C = 0.011828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.517353 B = 2049.493117 C = 2366.681241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.061 3.939 3 N -0.669 5.669 4 C 0.239 3.761 5 H 0.031 0.969 6 C -0.521 4.521 7 H 0.073 0.927 8 C 0.098 3.902 9 N -0.894 5.894 10 Si 0.876 3.124 11 H -0.293 1.293 12 H -0.312 1.312 13 H -0.203 1.203 14 C 0.126 3.874 15 C -0.307 4.307 16 C 0.062 3.938 17 C -0.065 4.065 18 N -0.320 5.320 19 N -0.354 5.354 20 C 0.118 3.882 21 H 0.060 0.940 22 H 0.050 0.950 23 H 0.044 0.956 24 H 0.078 0.922 25 H 0.012 0.988 26 H 0.317 0.683 27 H 0.264 0.736 28 H 0.140 0.860 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.863 0.530 9.781 10.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.068 4.068 3 N -0.303 5.303 4 C 0.130 3.870 5 H 0.048 0.952 6 C -0.559 4.559 7 H 0.091 0.909 8 C -0.108 4.108 9 N -0.529 5.529 10 Si 0.705 3.295 11 H -0.221 1.221 12 H -0.241 1.241 13 H -0.126 1.126 14 C -0.005 4.005 15 C -0.337 4.337 16 C -0.103 4.103 17 C -0.124 4.124 18 N -0.144 5.144 19 N -0.134 5.134 20 C -0.023 4.023 21 H 0.079 0.921 22 H 0.069 0.931 23 H 0.063 0.937 24 H 0.097 0.903 25 H 0.030 0.970 26 H 0.136 0.864 27 H 0.073 0.927 28 H 0.158 0.842 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.546 0.938 8.938 9.119 hybrid contribution -1.088 0.270 0.621 1.281 sum -2.634 1.207 9.559 9.988 Atomic orbital electron populations 1.21760 0.96340 1.00571 1.01747 1.21809 0.94120 0.90851 1.00058 1.61618 1.09042 1.11970 1.47646 1.18188 0.85277 0.86816 0.96764 0.95165 1.20601 1.31963 1.12379 0.90961 0.90870 1.24934 0.93916 0.97870 0.94062 1.69948 1.44170 1.35644 1.03134 0.87081 0.82781 0.80604 0.79044 1.22075 1.24061 1.12564 1.21870 0.84619 0.99230 0.94760 1.20973 1.00127 0.97333 1.15224 1.22074 0.91255 0.97252 0.99750 1.20055 1.01008 0.92247 0.99043 1.77091 1.20740 0.97173 1.19385 1.48061 1.06033 1.13785 1.45564 1.21687 0.84393 0.96213 1.00036 0.92052 0.93110 0.93681 0.90326 0.97020 0.86390 0.92730 0.84220 0.91246 0.91636 0.91069 0.90432 0.91250 0.89455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 10.17 37.16 0.38 -1.80 16 2 C 0.06 1.09 6.20 -3.82 -0.02 1.06 16 3 N -0.67 -13.72 3.14 -109.19 -0.34 -14.06 16 4 C 0.24 5.35 2.24 -70.02 -0.16 5.19 16 5 H 0.03 0.66 7.80 -51.93 -0.40 0.25 16 6 C -0.52 -13.78 8.02 -34.44 -0.28 -14.06 16 7 H 0.07 2.08 8.06 -52.48 -0.42 1.66 16 8 C 0.10 2.79 5.45 -17.82 -0.10 2.69 16 9 N -0.89 -27.11 13.96 55.43 0.77 -26.34 16 10 Si 0.88 22.80 23.45 -169.99 -3.99 18.81 16 11 H -0.29 -8.17 7.10 56.52 0.40 -7.77 16 12 H -0.31 -8.45 7.11 56.52 0.40 -8.05 16 13 H -0.20 -4.76 4.04 56.52 0.23 -4.54 16 14 C 0.13 2.80 4.25 -82.26 -0.35 2.45 16 15 C -0.31 -6.43 7.01 -40.01 -0.28 -6.71 16 16 C 0.06 1.26 7.22 -82.40 -0.59 0.66 16 17 C -0.06 -0.97 10.45 36.01 0.38 -0.60 16 18 N -0.32 -7.06 12.58 33.67 0.42 -6.64 16 19 N -0.35 -7.83 4.01 -63.88 -0.26 -8.09 16 20 C 0.12 2.23 10.38 59.85 0.62 2.85 16 21 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.08 1.55 8.00 -51.93 -0.42 1.14 16 25 H 0.01 0.19 8.06 -51.93 -0.42 -0.22 16 26 H 0.32 5.98 6.19 -39.29 -0.24 5.74 16 27 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 28 H 0.14 2.67 6.23 -52.49 -0.33 2.35 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.09 1.55 7.58 -51.93 -0.39 1.16 16 LS Contribution 272.12 15.07 4.10 4.10 Total: -1.00 -32.09 272.12 -5.01 -37.09 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -5.32 Total: 3.38 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -0.40 Total: -8.27 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: 0.60 Total: -55.12 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -3.99 Total: 18.81 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -32.09 -5.01 -37.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260551009.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.194 kcal (2) G-P(sol) polarization free energy of solvation -32.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds