Wall clock time and date at job start Mon Mar 30 2020 02:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46900 * 109.46773 * 2 1 4 4 C 1.46899 * 110.99736 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46824 * 324.99466 * 4 3 2 6 6 C 1.50695 * 109.47351 * 84.99637 * 4 3 2 7 7 H 1.08007 * 120.00378 * 239.99939 * 6 4 3 8 8 C 1.37880 * 120.00201 * 60.00175 * 6 4 3 9 9 N 1.31514 * 120.00202 * 179.97438 * 8 6 4 10 10 Si 1.86802 * 119.99611 * 359.97438 * 8 6 4 11 11 H 1.48500 * 109.47258 * 90.00247 * 10 8 6 12 12 H 1.48507 * 109.47081 * 210.00191 * 10 8 6 13 13 H 1.48498 * 109.47140 * 330.00054 * 10 8 6 14 14 C 1.50701 * 109.47195 * 204.99781 * 4 3 2 15 15 C 1.35320 * 126.12442 * 4.97634 * 14 4 3 16 16 C 1.39870 * 107.91564 * 180.02562 * 15 14 4 17 17 C 1.50706 * 125.89274 * 179.97438 * 16 15 14 18 18 N 1.30834 * 108.20400 * 0.25866 * 16 15 14 19 19 N 1.34947 * 126.12665 * 185.01331 * 14 4 3 20 20 C 1.46500 * 126.04042 * 359.96815 * 19 14 4 21 21 H 1.08995 * 109.47171 * 59.99935 * 1 2 3 22 22 H 1.08998 * 109.47407 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47100 * 299.99985 * 1 2 3 24 24 H 1.09003 * 109.46595 * 239.99879 * 2 1 3 25 25 H 1.08994 * 109.47032 * 119.99531 * 2 1 3 26 26 H 1.00899 * 111.00396 * 56.04349 * 3 2 1 27 27 H 0.97007 * 119.99616 * 179.97438 * 9 8 6 28 28 H 1.08001 * 126.03934 * 0.02562 * 15 14 4 29 29 H 1.08999 * 109.47015 * 90.00207 * 17 16 15 30 30 H 1.09000 * 109.46646 * 209.99359 * 17 16 15 31 31 H 1.09000 * 109.47248 * 330.00077 * 17 16 15 32 32 H 1.09005 * 109.47085 * 89.99692 * 20 19 14 33 33 H 1.08996 * 109.47009 * 210.00192 * 20 19 14 34 34 H 1.08999 * 109.46609 * 330.00098 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4881 1.4242 -0.0006 5 1 3.8740 0.5923 0.5886 6 6 3.9930 1.3140 -1.4162 7 1 4.6360 0.4932 -1.6979 8 6 3.6342 2.2610 -2.3519 9 7 4.0752 2.1651 -3.5871 10 14 2.5216 3.6803 -1.8649 11 1 3.3497 4.8195 -1.3942 12 1 1.7177 4.1046 -3.0393 13 1 1.6127 3.2451 -0.7741 14 6 3.9561 2.7248 0.5998 15 6 3.1700 3.6747 1.1574 16 6 3.9961 4.7171 1.5904 17 6 3.5393 5.9823 2.2700 18 7 5.2330 4.4068 1.2980 19 7 5.2342 3.1511 0.6770 20 6 6.4140 2.4305 0.1921 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5137 0.8900 26 1 1.6441 1.9013 0.7813 27 1 3.8224 2.8312 -4.2455 28 1 2.0949 3.6349 1.2515 29 1 3.5259 5.8305 3.3492 30 1 4.2250 6.7937 2.0257 31 1 2.5369 6.2377 1.9265 32 1 6.6094 2.7088 -0.8436 33 1 7.2759 2.6895 0.8068 34 1 6.2341 1.3572 0.2522 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260551009.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:42 Heat of formation + Delta-G solvation = 65.121148 kcal Electronic energy + Delta-G solvation = -16066.997401 eV Core-core repulsion = 13615.167767 eV Total energy + Delta-G solvation = -2451.829634 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.21234 -37.86945 -34.99548 -34.29450 -32.71304 -30.45816 -29.63491 -28.14264 -26.16827 -24.21045 -22.96104 -20.92276 -20.42319 -18.54049 -17.55789 -17.16442 -16.11128 -16.06354 -15.47806 -15.12680 -14.84449 -14.48302 -14.27518 -13.94748 -13.61591 -13.35919 -13.08093 -13.02341 -12.84451 -12.67122 -12.35813 -12.19903 -11.97134 -11.81705 -11.41187 -11.25957 -10.75549 -9.90421 -9.28833 -8.72377 -8.30066 -6.41525 1.04346 1.47698 1.55068 1.78489 1.79294 1.93435 2.54784 3.06989 3.54925 3.77968 4.03432 4.32966 4.39886 4.43634 4.52266 4.56364 4.64471 4.75521 4.78895 4.83275 4.86413 4.99311 5.07129 5.08273 5.24726 5.35452 5.45505 5.54195 5.93140 6.06752 6.20483 6.33585 6.66439 6.87687 6.95706 7.39553 8.80800 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.021692 B = 0.013659 C = 0.011828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.517353 B = 2049.493117 C = 2366.681241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.060 3.940 3 N -0.681 5.681 4 C 0.248 3.752 5 H 0.038 0.962 6 C -0.502 4.502 7 H 0.042 0.958 8 C 0.050 3.950 9 N -0.942 5.942 10 Si 0.922 3.078 11 H -0.317 1.317 12 H -0.330 1.330 13 H -0.158 1.158 14 C 0.104 3.896 15 C -0.309 4.309 16 C 0.058 3.942 17 C -0.065 4.065 18 N -0.344 5.344 19 N -0.370 5.370 20 C 0.117 3.883 21 H 0.047 0.953 22 H 0.073 0.927 23 H 0.064 0.936 24 H 0.051 0.949 25 H 0.030 0.970 26 H 0.333 0.667 27 H 0.259 0.741 28 H 0.161 0.839 29 H 0.097 0.903 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.053 0.947 33 H 0.099 0.901 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.606 0.993 12.363 13.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.069 4.069 3 N -0.316 5.316 4 C 0.138 3.862 5 H 0.056 0.944 6 C -0.540 4.540 7 H 0.060 0.940 8 C -0.150 4.150 9 N -0.580 5.580 10 Si 0.752 3.248 11 H -0.247 1.247 12 H -0.261 1.261 13 H -0.079 1.079 14 C -0.027 4.027 15 C -0.338 4.338 16 C -0.108 4.108 17 C -0.123 4.123 18 N -0.167 5.167 19 N -0.151 5.151 20 C -0.024 4.024 21 H 0.067 0.933 22 H 0.092 0.908 23 H 0.083 0.917 24 H 0.070 0.930 25 H 0.049 0.951 26 H 0.154 0.846 27 H 0.067 0.933 28 H 0.179 0.821 29 H 0.115 0.885 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.072 0.928 33 H 0.118 0.882 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.306 1.374 11.555 12.097 hybrid contribution -0.478 0.059 -0.116 0.496 sum -3.784 1.433 11.439 12.134 Atomic orbital electron populations 1.21705 0.93656 1.02278 1.02037 1.21851 0.96285 0.89138 0.99613 1.61282 1.07496 1.14137 1.48683 1.17927 0.86572 0.87636 0.94056 0.94439 1.20759 1.30019 1.10241 0.93018 0.94025 1.25561 0.95420 1.00069 0.93993 1.70068 1.46739 1.36860 1.04378 0.86483 0.81730 0.77423 0.79158 1.24662 1.26080 1.07895 1.21891 0.85311 0.99369 0.96084 1.21299 1.01138 0.96895 1.14462 1.22919 0.90459 0.98610 0.98770 1.20265 1.01898 0.89818 1.00325 1.77072 1.22165 0.97313 1.20191 1.48356 1.06570 1.14197 1.45930 1.21761 0.85057 0.96376 0.99212 0.93334 0.90830 0.91731 0.93046 0.95139 0.84629 0.93266 0.82108 0.88467 0.91210 0.89176 0.92849 0.88218 0.88909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 10.17 71.98 0.73 -2.91 16 2 C 0.06 1.99 6.20 86.30 0.53 2.52 16 3 N -0.68 -26.06 3.14 -499.36 -1.57 -27.63 16 4 C 0.25 10.77 2.24 43.42 0.10 10.87 16 5 H 0.04 1.57 7.80 -2.39 -0.02 1.55 16 6 C -0.50 -26.87 8.02 25.60 0.21 -26.67 16 7 H 0.04 2.45 8.06 -2.91 -0.02 2.42 16 8 C 0.05 2.88 5.45 84.66 0.46 3.34 16 9 N -0.94 -59.11 13.96 21.45 0.30 -58.81 16 10 Si 0.92 47.00 23.45 68.60 1.61 48.61 16 11 H -0.32 -17.42 7.10 99.48 0.71 -16.72 16 12 H -0.33 -17.73 7.11 99.48 0.71 -17.02 16 13 H -0.16 -6.85 4.04 99.48 0.40 -6.44 16 14 C 0.10 4.43 4.25 41.41 0.18 4.61 16 15 C -0.31 -11.96 7.01 21.99 0.15 -11.80 16 16 C 0.06 2.17 7.22 43.10 0.31 2.49 16 17 C -0.06 -1.69 10.45 71.24 0.74 -0.94 16 18 N -0.34 -14.58 12.58 -47.38 -0.60 -15.18 16 19 N -0.37 -16.00 4.01 -356.03 -1.43 -17.43 16 20 C 0.12 4.42 10.38 127.77 1.33 5.74 16 21 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 22 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 24 H 0.05 1.98 8.00 -2.39 -0.02 1.96 16 25 H 0.03 0.91 8.06 -2.39 -0.02 0.89 16 26 H 0.33 11.17 6.19 -89.69 -0.56 10.61 16 27 H 0.26 15.76 8.31 -92.70 -0.77 14.99 16 28 H 0.16 5.39 6.23 -2.91 -0.02 5.38 16 29 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16 33 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 34 H 0.09 3.31 7.58 -2.39 -0.02 3.29 16 Total: -1.00 -70.13 272.12 3.27 -66.86 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.22 Total: 16.33 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: 4.74 Total: -12.75 kcal Atomic # 7 Polarization: -115.75 SS G_CDS: -3.29 Total: -119.04 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 1.61 Total: 48.61 kcal Total: -70.13 3.27 -66.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260551009.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.977 kcal (2) G-P(sol) polarization free energy of solvation -70.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds