Wall clock time and date at job start Mon Mar 30 2020 02:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00294 * 2 1 4 4 H 1.48505 * 109.47225 * 269.99971 * 3 2 1 5 5 H 1.48493 * 109.47147 * 29.99752 * 3 2 1 6 6 H 1.48495 * 109.47402 * 150.00302 * 3 2 1 7 7 C 1.37881 * 119.99599 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99634 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00577 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47287 * 184.75736 * 9 7 2 11 11 H 1.09001 * 109.47297 * 52.74422 * 10 9 7 12 12 C 1.52998 * 109.47045 * 292.74225 * 10 9 7 13 13 C 1.53003 * 117.50106 * 3.60162 * 12 10 9 14 14 C 1.53002 * 117.50034 * 294.93958 * 12 10 9 15 15 C 1.53005 * 109.47111 * 172.74762 * 10 9 7 16 16 C 1.53116 * 109.52442 * 180.12593 * 15 10 9 17 17 C 1.53166 * 109.20785 * 177.56014 * 16 15 10 18 18 N 1.46850 * 109.55591 * 300.85638 * 17 16 15 19 19 C 1.46847 * 111.19530 * 61.74518 * 18 17 16 20 20 C 1.53038 * 109.52296 * 298.25505 * 19 18 17 21 21 H 0.97000 * 119.99829 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.47017 * 64.75091 * 9 7 2 23 23 H 1.09006 * 109.46687 * 304.75689 * 9 7 2 24 24 H 1.09005 * 115.55306 * 149.26942 * 12 10 9 25 25 H 1.09002 * 117.49535 * 359.97438 * 13 12 10 26 26 H 1.08991 * 117.49974 * 145.01832 * 13 12 10 27 27 H 1.09000 * 117.49718 * 214.97640 * 14 12 10 28 28 H 1.09000 * 117.49951 * 359.97438 * 14 12 10 29 29 H 1.09001 * 109.52598 * 59.99498 * 15 10 9 30 30 H 1.09005 * 109.50174 * 297.56144 * 16 15 10 31 31 H 1.08999 * 109.50271 * 57.67939 * 16 15 10 32 32 H 1.08995 * 109.44584 * 180.83489 * 17 16 15 33 33 H 1.08993 * 109.43982 * 60.87673 * 17 16 15 34 34 H 1.00901 * 111.00270 * 185.84050 * 18 17 16 35 35 H 1.09007 * 109.46169 * 178.24220 * 19 18 17 36 36 H 1.08994 * 109.45374 * 58.27028 * 19 18 17 37 37 H 1.08993 * 109.50574 * 299.23859 * 20 19 18 38 38 H 1.09004 * 109.52976 * 179.14052 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2409 -3.6596 0.1217 11 1 2.8899 -3.4960 0.9821 12 6 3.0893 -3.7397 -1.1490 13 6 2.8743 -2.6597 -2.2113 14 6 2.3729 -4.0851 -2.4561 15 6 1.4717 -4.9694 0.3047 16 6 2.4614 -6.1312 0.4281 17 6 1.6864 -7.4297 0.6719 18 7 0.8927 -7.3050 1.9011 19 6 -0.0961 -6.2254 1.7874 20 6 0.6246 -4.8917 1.5779 21 1 -0.4850 0.8401 0.0004 22 1 0.6894 -2.5953 -0.9275 23 1 0.5622 -2.5203 0.8464 24 1 4.1023 -4.1190 -1.0149 25 1 2.1281 -1.8923 -2.0049 26 1 3.7457 -2.3288 -2.7761 27 1 2.9148 -4.6914 -3.1820 28 1 1.2973 -4.2558 -2.4106 29 1 0.8224 -5.1338 -0.5553 30 1 3.0382 -6.2172 -0.4928 31 1 3.1356 -5.9476 1.2647 32 1 2.3882 -8.2572 0.7751 33 1 1.0225 -7.6196 -0.1714 34 1 0.4476 -8.1800 2.1344 35 1 -0.6890 -6.1782 2.7010 36 1 -0.7515 -6.4213 0.9389 37 1 1.2699 -4.6886 2.4325 38 1 -0.1097 -4.0923 1.4783 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260593235.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:49 Heat of formation + Delta-G solvation = 2.794435 kcal Electronic energy + Delta-G solvation = -16131.240855 eV Core-core repulsion = 13780.248876 eV Total energy + Delta-G solvation = -2350.991979 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.03596 -36.84425 -33.00195 -32.37179 -30.50087 -28.95992 -25.73908 -23.09537 -22.46764 -21.61267 -21.21989 -19.36522 -17.88178 -16.52348 -16.02260 -15.40938 -14.43982 -14.34269 -13.81503 -13.62071 -13.20739 -12.81921 -12.59428 -12.05541 -11.88046 -11.49084 -11.10464 -10.96146 -10.84914 -10.68788 -10.53250 -10.24290 -10.03548 -9.78489 -9.67352 -9.31812 -9.21213 -8.88254 -8.63393 -8.28039 -8.27618 -5.95584 -3.93508 3.34121 3.41162 3.44721 4.40330 4.49728 4.72177 5.21385 5.24378 5.34943 5.38751 5.55588 5.62429 5.72780 5.79296 5.87321 5.91458 6.03093 6.08577 6.16018 6.22835 6.35745 6.38563 6.52699 6.68960 6.72180 6.82083 6.85748 6.88457 7.11626 7.21440 7.29277 7.50323 7.52700 7.79988 7.90394 8.05912 8.51159 9.11441 9.66672 11.15304 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.033832 B = 0.008034 C = 0.007001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.416768 B = 3484.208593 C = 3998.556946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.885 3.115 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.503 4.503 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.049 4.049 11 H 0.060 0.940 12 C -0.132 4.132 13 C -0.172 4.172 14 C -0.197 4.197 15 C -0.076 4.076 16 C -0.109 4.109 17 C 0.059 3.941 18 N -0.691 5.691 19 C 0.058 3.942 20 C -0.114 4.114 21 H 0.259 0.741 22 H 0.013 0.987 23 H 0.023 0.977 24 H 0.080 0.920 25 H 0.140 0.860 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.024 0.976 34 H 0.334 0.666 35 H 0.068 0.932 36 H 0.025 0.975 37 H 0.065 0.935 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.047 -12.030 -0.030 12.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.713 3.287 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.542 4.542 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.067 4.067 11 H 0.078 0.922 12 C -0.150 4.150 13 C -0.208 4.208 14 C -0.234 4.234 15 C -0.095 4.095 16 C -0.147 4.147 17 C -0.071 4.071 18 N -0.322 5.322 19 C -0.071 4.071 20 C -0.151 4.151 21 H 0.068 0.932 22 H 0.031 0.969 23 H 0.042 0.958 24 H 0.098 0.902 25 H 0.157 0.843 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.043 0.957 34 H 0.150 0.850 35 H 0.086 0.914 36 H 0.043 0.957 37 H 0.084 0.916 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.364 -11.509 0.286 11.753 hybrid contribution -0.146 0.501 -0.671 0.850 sum 2.217 -11.008 -0.385 11.236 Atomic orbital electron populations 1.69959 1.05957 1.26379 1.51332 1.24996 0.94757 0.98985 0.95853 0.86695 0.79953 0.83968 0.78036 1.20790 1.21430 1.19957 1.21247 0.93156 0.90753 1.49014 0.92475 1.19287 0.93776 0.91085 0.97128 1.20821 0.96778 0.94333 0.94769 0.92185 1.22069 0.98228 1.04113 0.90586 1.23538 1.03758 0.92894 1.00625 1.22860 0.99948 1.00643 0.99924 1.21193 0.96307 0.95060 0.96922 1.21660 0.98083 0.93640 1.01317 1.21958 0.96320 0.98605 0.90174 1.60307 1.27637 1.08599 1.35619 1.21977 0.92982 0.92463 0.99661 1.21712 0.99607 0.95410 0.98409 0.93170 0.96877 0.95829 0.90210 0.84255 0.91275 0.90931 0.89625 0.92264 0.91755 0.91736 0.91639 0.95729 0.84966 0.91356 0.95663 0.91579 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.31 13.29 55.43 0.74 -25.58 16 2 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 3 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.50 -13.55 6.27 -34.44 -0.22 -13.77 16 8 H 0.06 1.53 7.36 -52.48 -0.39 1.15 16 9 C 0.02 0.59 3.78 -27.89 -0.11 0.48 16 10 C -0.05 -0.98 1.77 -90.62 -0.16 -1.14 16 11 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 12 C -0.13 -2.49 4.48 -90.62 -0.41 -2.89 16 13 C -0.17 -3.46 8.65 -26.69 -0.23 -3.69 16 14 C -0.20 -3.49 9.36 -26.69 -0.25 -3.74 16 15 C -0.08 -1.32 1.61 -90.49 -0.15 -1.47 16 16 C -0.11 -1.63 5.10 -26.59 -0.14 -1.77 16 17 C 0.06 0.77 6.55 -3.77 -0.02 0.74 16 18 N -0.69 -9.09 6.85 -113.74 -0.78 -9.87 16 19 C 0.06 0.83 6.55 -3.83 -0.03 0.80 16 20 C -0.11 -1.94 4.97 -26.65 -0.13 -2.07 16 21 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 22 H 0.01 0.34 6.63 -51.93 -0.34 0.00 16 23 H 0.02 0.62 6.13 -51.93 -0.32 0.30 16 24 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 25 H 0.14 3.32 4.69 -51.93 -0.24 3.08 16 26 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.09 1.58 7.06 -51.93 -0.37 1.21 16 29 H 0.06 1.07 6.99 -51.93 -0.36 0.71 16 30 H 0.06 0.93 7.31 -51.93 -0.38 0.55 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.33 3.58 8.90 -39.29 -0.35 3.23 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.08 1.45 6.42 -51.93 -0.33 1.12 16 LS Contribution 286.75 15.07 4.32 4.32 Total: -1.00 -28.16 286.75 -9.12 -37.27 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -6.45 Total: 4.46 kcal Atomic # 6 Polarization: -25.15 SS G_CDS: -1.93 Total: -27.08 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: -0.04 Total: -35.44 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.16 -9.12 -37.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260593235.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.069 kcal (2) G-P(sol) polarization free energy of solvation -28.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds