Wall clock time and date at job start Mon Mar 30 2020 02:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00294 * 2 1 4 4 H 1.48505 * 109.47225 * 269.99971 * 3 2 1 5 5 H 1.48493 * 109.47147 * 29.99752 * 3 2 1 6 6 H 1.48495 * 109.47402 * 150.00302 * 3 2 1 7 7 C 1.37881 * 119.99599 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99634 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00577 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47287 * 184.75736 * 9 7 2 11 11 H 1.09001 * 109.47297 * 52.74422 * 10 9 7 12 12 C 1.52998 * 109.47045 * 292.74225 * 10 9 7 13 13 C 1.53003 * 117.50106 * 3.60162 * 12 10 9 14 14 C 1.53002 * 117.50034 * 294.93958 * 12 10 9 15 15 C 1.53005 * 109.47111 * 172.74762 * 10 9 7 16 16 C 1.53116 * 109.52442 * 180.12593 * 15 10 9 17 17 C 1.53166 * 109.20785 * 177.56014 * 16 15 10 18 18 N 1.46850 * 109.55591 * 300.85638 * 17 16 15 19 19 C 1.46847 * 111.19530 * 61.74518 * 18 17 16 20 20 C 1.53038 * 109.52296 * 298.25505 * 19 18 17 21 21 H 0.97000 * 119.99829 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.47017 * 64.75091 * 9 7 2 23 23 H 1.09006 * 109.46687 * 304.75689 * 9 7 2 24 24 H 1.09005 * 115.55306 * 149.26942 * 12 10 9 25 25 H 1.09002 * 117.49535 * 359.97438 * 13 12 10 26 26 H 1.08991 * 117.49974 * 145.01832 * 13 12 10 27 27 H 1.09000 * 117.49718 * 214.97640 * 14 12 10 28 28 H 1.09000 * 117.49951 * 359.97438 * 14 12 10 29 29 H 1.09001 * 109.52598 * 59.99498 * 15 10 9 30 30 H 1.09005 * 109.50174 * 297.56144 * 16 15 10 31 31 H 1.08999 * 109.50271 * 57.67939 * 16 15 10 32 32 H 1.08995 * 109.44584 * 180.83489 * 17 16 15 33 33 H 1.08993 * 109.43982 * 60.87673 * 17 16 15 34 34 H 1.00901 * 111.00270 * 185.84050 * 18 17 16 35 35 H 1.09007 * 109.46169 * 178.24220 * 19 18 17 36 36 H 1.08994 * 109.45374 * 58.27028 * 19 18 17 37 37 H 1.08993 * 109.50574 * 299.23859 * 20 19 18 38 38 H 1.09004 * 109.52976 * 179.14052 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2409 -3.6596 0.1217 11 1 2.8899 -3.4960 0.9821 12 6 3.0893 -3.7397 -1.1490 13 6 2.8743 -2.6597 -2.2113 14 6 2.3729 -4.0851 -2.4561 15 6 1.4717 -4.9694 0.3047 16 6 2.4614 -6.1312 0.4281 17 6 1.6864 -7.4297 0.6719 18 7 0.8927 -7.3050 1.9011 19 6 -0.0961 -6.2254 1.7874 20 6 0.6246 -4.8917 1.5779 21 1 -0.4850 0.8401 0.0004 22 1 0.6894 -2.5953 -0.9275 23 1 0.5622 -2.5203 0.8464 24 1 4.1023 -4.1190 -1.0149 25 1 2.1281 -1.8923 -2.0049 26 1 3.7457 -2.3288 -2.7761 27 1 2.9148 -4.6914 -3.1820 28 1 1.2973 -4.2558 -2.4106 29 1 0.8224 -5.1338 -0.5553 30 1 3.0382 -6.2172 -0.4928 31 1 3.1356 -5.9476 1.2647 32 1 2.3882 -8.2572 0.7751 33 1 1.0225 -7.6196 -0.1714 34 1 0.4476 -8.1800 2.1344 35 1 -0.6890 -6.1782 2.7010 36 1 -0.7515 -6.4213 0.9389 37 1 1.2699 -4.6886 2.4325 38 1 -0.1097 -4.0923 1.4783 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260593235.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:48 Heat of formation + Delta-G solvation = -13.908070 kcal Electronic energy + Delta-G solvation = -16131.965130 eV Core-core repulsion = 13780.248876 eV Total energy + Delta-G solvation = -2351.716254 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.46944 -38.21823 -34.93201 -33.92127 -31.72390 -30.71788 -27.49339 -24.69067 -23.87275 -23.14093 -22.71792 -20.67436 -19.48461 -18.38051 -17.43379 -16.99444 -16.45142 -15.46474 -15.20507 -14.93334 -14.73052 -14.39254 -14.00995 -13.78751 -13.37763 -12.97182 -12.89792 -12.73522 -12.42599 -12.24608 -12.06247 -11.78073 -11.63371 -11.49409 -11.19160 -11.10260 -10.83450 -10.64468 -10.41423 -10.22480 -9.33785 -8.11772 -6.15294 1.40080 1.40734 1.51051 2.44643 3.16847 3.23850 3.37555 3.92481 3.99680 4.03861 4.22621 4.34554 4.39553 4.40323 4.52738 4.60867 4.69912 4.80771 4.84188 4.95215 4.97260 5.01865 5.15079 5.20210 5.23098 5.28788 5.36002 5.41946 5.53731 5.58912 5.69203 5.82510 5.93745 5.97339 6.12563 6.39076 6.61276 6.97154 7.48052 8.99650 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.033832 B = 0.008034 C = 0.007001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.416768 B = 3484.208593 C = 3998.556946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.949 3.051 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.505 4.505 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.043 4.043 11 H 0.048 0.952 12 C -0.131 4.131 13 C -0.193 4.193 14 C -0.171 4.171 15 C -0.069 4.069 16 C -0.103 4.103 17 C 0.060 3.940 18 N -0.695 5.695 19 C 0.066 3.934 20 C -0.113 4.113 21 H 0.259 0.741 22 H -0.011 1.011 23 H -0.005 1.005 24 H 0.104 0.896 25 H 0.096 0.904 26 H 0.087 0.913 27 H 0.107 0.893 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.029 0.971 34 H 0.352 0.648 35 H 0.080 0.920 36 H 0.027 0.973 37 H 0.054 0.946 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.570 -13.764 -0.394 14.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.775 3.225 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.543 4.543 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.061 4.061 11 H 0.066 0.934 12 C -0.149 4.149 13 C -0.230 4.230 14 C -0.208 4.208 15 C -0.088 4.088 16 C -0.141 4.141 17 C -0.069 4.069 18 N -0.327 5.327 19 C -0.064 4.064 20 C -0.151 4.151 21 H 0.068 0.932 22 H 0.007 0.993 23 H 0.013 0.987 24 H 0.122 0.878 25 H 0.115 0.885 26 H 0.105 0.895 27 H 0.125 0.875 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.047 0.953 34 H 0.171 0.829 35 H 0.098 0.902 36 H 0.046 0.954 37 H 0.073 0.927 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.895 -13.263 -0.075 13.823 hybrid contribution -0.642 1.043 -0.557 1.345 sum 3.254 -12.220 -0.631 12.662 Atomic orbital electron populations 1.70090 1.07522 1.27131 1.52905 1.25794 0.95530 1.02565 0.95838 0.85679 0.78812 0.79750 0.78254 1.20085 1.21309 1.19098 1.21533 0.93172 0.91834 1.47754 0.92543 1.19101 0.93926 0.92535 0.94519 1.20673 0.95917 0.94195 0.95361 0.93398 1.22090 0.99200 1.03685 0.89947 1.23338 1.03758 0.93209 1.02656 1.22869 0.99596 0.98793 0.99562 1.21088 0.96524 0.94636 0.96549 1.21595 0.97435 0.93397 1.01659 1.21968 0.96625 0.98041 0.90225 1.60242 1.27469 1.09186 1.35843 1.21836 0.92937 0.91204 1.00402 1.21635 0.98943 0.96560 0.97984 0.93247 0.99316 0.98657 0.87821 0.88530 0.89505 0.87495 0.90805 0.93040 0.90642 0.92346 0.89158 0.95297 0.82911 0.90150 0.95437 0.92686 0.93448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.89 13.29 21.45 0.28 -56.60 16 2 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 3 Si 0.95 44.81 29.54 68.60 2.03 46.84 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.50 -27.97 6.27 25.60 0.16 -27.81 16 8 H 0.06 3.07 7.36 -2.91 -0.02 3.05 16 9 C 0.04 1.85 3.78 29.85 0.11 1.96 16 10 C -0.04 -1.75 1.77 -10.79 -0.02 -1.77 16 11 H 0.05 2.05 8.13 -2.39 -0.02 2.03 16 12 C -0.13 -4.77 4.48 -10.79 -0.05 -4.82 16 13 C -0.19 -7.66 8.65 30.62 0.26 -7.40 16 14 C -0.17 -5.75 9.36 30.62 0.29 -5.46 16 15 C -0.07 -2.38 1.61 -10.71 -0.02 -2.40 16 16 C -0.10 -2.84 5.10 30.69 0.16 -2.68 16 17 C 0.06 1.38 6.55 86.37 0.57 1.95 16 18 N -0.69 -16.43 6.85 -513.78 -3.52 -19.95 16 19 C 0.07 1.78 6.55 86.33 0.57 2.35 16 20 C -0.11 -3.93 4.97 30.65 0.15 -3.78 16 21 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 22 H -0.01 -0.64 6.63 -2.39 -0.02 -0.65 16 23 H 0.00 -0.28 6.13 -2.38 -0.01 -0.29 16 24 H 0.10 3.33 8.14 -2.38 -0.02 3.31 16 25 H 0.10 4.75 4.69 -2.39 -0.01 4.74 16 26 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 27 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 28 H 0.07 2.66 7.06 -2.39 -0.02 2.65 16 29 H 0.05 1.85 6.99 -2.39 -0.02 1.83 16 30 H 0.08 1.92 7.31 -2.38 -0.02 1.90 16 31 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 32 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.35 6.40 8.90 -89.69 -0.80 5.60 16 35 H 0.08 1.98 8.14 -2.38 -0.02 1.97 16 36 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.05 1.89 6.42 -2.38 -0.02 1.88 16 Total: -1.00 -62.05 286.75 1.66 -60.39 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 0.23 Total: 18.76 kcal Atomic # 6 Polarization: -52.07 SS G_CDS: 2.64 Total: -49.43 kcal Atomic # 7 Polarization: -73.32 SS G_CDS: -3.23 Total: -76.55 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -62.05 1.66 -60.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260593235.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.480 kcal (2) G-P(sol) polarization free energy of solvation -62.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds