Wall clock time and date at job start Mon Mar 30 2020 02:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99746 * 2 1 4 4 H 1.48505 * 109.46991 * 239.99638 * 3 2 1 5 5 H 1.48500 * 109.47476 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47031 * 119.99935 * 3 2 1 7 7 C 1.37875 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00274 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99625 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47104 * 179.97438 * 9 7 2 11 11 H 1.09008 * 109.46845 * 305.00355 * 10 9 7 12 12 C 1.52995 * 109.46832 * 64.99642 * 10 9 7 13 13 C 1.53002 * 117.50111 * 253.88421 * 12 10 9 14 14 C 1.53006 * 117.49857 * 185.22677 * 12 10 9 15 15 C 1.52995 * 109.47382 * 185.00027 * 10 9 7 16 16 C 1.53118 * 109.52507 * 65.50324 * 15 10 9 17 17 C 1.53038 * 109.28163 * 182.44324 * 16 15 10 18 18 N 1.46843 * 109.52198 * 59.18211 * 17 16 15 19 19 C 1.46850 * 111.19844 * 298.25651 * 18 17 16 20 20 C 1.53046 * 109.52119 * 61.74289 * 19 18 17 21 21 H 0.96994 * 119.99816 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.47063 * 59.99865 * 9 7 2 23 23 H 1.08995 * 109.47234 * 299.99384 * 9 7 2 24 24 H 1.09000 * 115.55047 * 39.56516 * 12 10 9 25 25 H 1.09000 * 117.49511 * 0.02562 * 13 12 10 26 26 H 1.09007 * 117.49685 * 145.02288 * 13 12 10 27 27 H 1.08992 * 117.50213 * 214.98135 * 14 12 10 28 28 H 1.09006 * 117.49429 * 0.02562 * 14 12 10 29 29 H 1.08992 * 109.57775 * 185.66661 * 15 10 9 30 30 H 1.09000 * 109.50162 * 62.50137 * 16 15 10 31 31 H 1.09000 * 109.50742 * 302.38883 * 16 15 10 32 32 H 1.09000 * 109.46126 * 299.16351 * 17 16 15 33 33 H 1.08998 * 109.46026 * 179.20154 * 17 16 15 34 34 H 1.00898 * 111.00306 * 62.35308 * 18 17 16 35 35 H 1.08996 * 109.46362 * 181.75999 * 19 18 17 36 36 H 1.08995 * 109.46328 * 301.73132 * 19 18 17 37 37 H 1.08991 * 109.50017 * 180.88061 * 20 19 18 38 38 H 1.08996 * 109.49968 * 60.76141 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 1 2.9295 -3.5551 -0.8413 12 6 3.0401 -3.6535 1.3078 13 6 4.4957 -3.1861 1.2466 14 6 4.1756 -4.6689 1.4510 15 6 1.4846 -4.9835 -0.1252 16 6 0.7995 -5.0515 -1.4929 17 6 -0.0092 -6.3472 -1.5891 18 7 -1.0122 -6.3804 -0.5172 19 6 -0.3758 -6.3639 0.8062 20 6 0.4220 -5.0687 0.9739 21 1 -0.4849 0.8400 -0.0004 22 1 0.6247 -2.5570 -0.8897 23 1 0.6242 -2.5567 0.8903 24 1 2.4696 -3.4070 2.2033 25 1 4.8870 -2.8843 0.2750 26 1 4.8829 -2.6323 2.1021 27 1 4.3524 -5.0901 2.4406 28 1 4.3566 -5.3428 0.6135 29 1 2.1803 -5.8165 -0.0245 30 1 1.5542 -5.0343 -2.2791 31 1 0.1329 -4.1970 -1.6089 32 1 0.6601 -7.2014 -1.4870 33 1 -0.5097 -6.3919 -2.5564 34 1 -1.6685 -5.6199 -0.6122 35 1 -1.1427 -6.4208 1.5787 36 1 0.2951 -7.2180 0.8972 37 1 0.9068 -5.0639 1.9500 38 1 -0.2507 -4.2145 0.8968 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260593238.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:51 Heat of formation + Delta-G solvation = -4.798809 kcal Electronic energy + Delta-G solvation = -16110.528312 eV Core-core repulsion = 13759.207065 eV Total energy + Delta-G solvation = -2351.321247 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.14056 -36.75540 -33.47320 -32.16359 -30.47255 -28.85041 -25.43827 -22.77606 -22.54842 -21.82804 -21.67661 -20.05413 -18.21360 -16.38914 -15.47438 -14.96470 -14.38590 -14.29277 -14.06805 -13.88064 -13.69018 -12.63689 -12.21357 -12.02091 -11.90296 -11.64365 -11.31500 -11.02552 -10.89151 -10.85113 -10.74037 -10.56750 -10.18133 -10.09355 -9.77423 -9.50918 -9.39310 -8.85017 -8.82367 -8.29137 -8.02564 -5.96204 -3.96011 3.33874 3.38585 3.41081 4.46387 4.49622 4.62036 5.13385 5.19640 5.39170 5.45295 5.46764 5.54688 5.62188 5.71402 5.77635 5.78217 5.89386 6.07094 6.14395 6.20720 6.26291 6.31099 6.42222 6.54610 6.56568 6.61833 6.67139 6.74995 6.85320 7.07506 7.24051 7.29199 7.61703 7.72107 7.85985 8.03994 8.50112 9.10489 9.67031 11.15141 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.025632 B = 0.008971 C = 0.007333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.102747 B = 3120.440717 C = 3817.188890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.886 3.114 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.510 4.510 8 H 0.056 0.944 9 C 0.032 3.968 10 C -0.049 4.049 11 H 0.054 0.946 12 C -0.105 4.105 13 C -0.174 4.174 14 C -0.201 4.201 15 C -0.073 4.073 16 C -0.155 4.155 17 C 0.058 3.942 18 N -0.690 5.690 19 C 0.056 3.944 20 C -0.152 4.152 21 H 0.259 0.741 22 H 0.017 0.983 23 H 0.018 0.982 24 H 0.095 0.905 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.341 0.659 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.283 -10.778 0.537 11.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.714 3.286 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.548 4.548 8 H 0.074 0.926 9 C -0.005 4.005 10 C -0.067 4.067 11 H 0.072 0.928 12 C -0.123 4.123 13 C -0.211 4.211 14 C -0.239 4.239 15 C -0.091 4.091 16 C -0.194 4.194 17 C -0.072 4.072 18 N -0.318 5.318 19 C -0.073 4.073 20 C -0.191 4.191 21 H 0.068 0.932 22 H 0.035 0.965 23 H 0.037 0.963 24 H 0.114 0.886 25 H 0.106 0.894 26 H 0.101 0.899 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.158 0.842 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.057 -11.364 0.521 11.560 hybrid contribution 0.924 2.083 0.114 2.282 sum 2.982 -9.281 0.635 9.768 Atomic orbital electron populations 1.69942 1.05944 1.26453 1.51489 1.24991 0.94768 0.98996 0.95729 0.86754 0.79648 0.83638 0.78521 1.20419 1.21438 1.20375 1.21267 0.93130 0.90934 1.49501 0.92579 1.19183 0.93405 0.90820 0.97069 1.20885 0.97124 0.94863 0.93872 0.92750 1.22141 0.89692 1.00453 1.00060 1.22829 1.00352 0.95679 1.02250 1.22950 1.06869 0.92627 1.01407 1.21115 0.96137 0.98082 0.93803 1.22372 1.00422 0.98884 0.97757 1.21991 0.93726 0.96983 0.94462 1.60751 1.17670 1.50819 1.02585 1.22022 0.97358 0.97238 0.90703 1.22344 0.98874 0.98602 0.99255 0.93152 0.96480 0.96337 0.88635 0.89352 0.89859 0.90063 0.89783 0.92725 0.92171 0.90731 0.91708 0.91406 0.84179 0.91427 0.91748 0.91854 0.90636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.51 -13.99 8.61 -34.44 -0.30 -14.29 16 8 H 0.06 1.51 6.99 -52.49 -0.37 1.15 16 9 C 0.03 0.78 3.63 -27.88 -0.10 0.68 16 10 C -0.05 -0.97 1.69 -90.62 -0.15 -1.12 16 11 H 0.05 1.13 7.94 -51.92 -0.41 0.72 16 12 C -0.11 -1.95 3.63 -90.62 -0.33 -2.28 16 13 C -0.17 -3.04 9.53 -26.69 -0.25 -3.29 16 14 C -0.20 -3.12 9.74 -26.69 -0.26 -3.38 16 15 C -0.07 -1.21 1.98 -90.50 -0.18 -1.39 16 16 C -0.16 -2.47 5.18 -26.65 -0.14 -2.61 16 17 C 0.06 0.80 6.55 -3.84 -0.03 0.77 16 18 N -0.69 -9.67 6.87 -113.82 -0.78 -10.45 16 19 C 0.06 0.78 6.55 -3.83 -0.03 0.76 16 20 C -0.15 -2.44 4.71 -26.65 -0.13 -2.57 16 21 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 22 H 0.02 0.45 6.32 -51.93 -0.33 0.12 16 23 H 0.02 0.48 6.59 -51.93 -0.34 0.14 16 24 H 0.10 1.88 7.94 -51.93 -0.41 1.46 16 25 H 0.09 1.57 8.08 -51.93 -0.42 1.15 16 26 H 0.08 1.39 8.14 -51.92 -0.42 0.96 16 27 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.08 1.24 7.93 -51.93 -0.41 0.83 16 29 H 0.05 0.87 7.49 -51.93 -0.39 0.48 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 1.36 6.38 -51.93 -0.33 1.03 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.34 4.78 8.86 -39.29 -0.35 4.44 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 1.01 7.35 -51.93 -0.38 0.63 16 38 H 0.08 1.40 6.32 -51.93 -0.33 1.07 16 LS Contribution 291.77 15.07 4.40 4.40 Total: -1.00 -28.43 291.77 -9.22 -37.65 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -6.57 Total: 4.84 kcal Atomic # 6 Polarization: -25.26 SS G_CDS: -1.98 Total: -27.24 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: -0.05 Total: -36.35 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.43 -9.22 -37.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260593238.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.852 kcal (2) G-P(sol) polarization free energy of solvation -28.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds