Wall clock time and date at job start Mon Mar 30 2020 02:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 119.99936 * 2 1 4 4 H 1.48493 * 109.47037 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46910 * 300.00001 * 3 2 1 6 6 H 1.48497 * 109.47158 * 60.00150 * 3 2 1 7 7 C 1.37876 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99666 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00221 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47256 * 185.46251 * 9 7 2 11 11 H 1.09001 * 109.47220 * 306.17840 * 10 9 7 12 12 C 1.52999 * 109.46958 * 66.17671 * 10 9 7 13 13 C 1.53784 * 113.61709 * 279.13838 * 12 10 9 14 14 C 1.53958 * 87.01820 * 220.04781 * 13 12 10 15 15 C 1.53781 * 113.61575 * 181.52581 * 12 10 9 16 16 C 1.53000 * 109.47075 * 186.17329 * 10 9 7 17 17 H 1.08994 * 110.77240 * 291.04003 * 16 10 9 18 18 C 1.55439 * 110.69079 * 167.86441 * 16 10 9 19 19 C 1.54904 * 101.52004 * 205.97946 * 18 16 10 20 20 N 1.47846 * 104.89813 * 37.06348 * 19 18 16 21 21 C 1.47447 * 108.56334 * 335.85277 * 20 19 18 22 22 H 0.96992 * 119.99959 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.46960 * 65.46302 * 9 7 2 24 24 H 1.08998 * 109.47317 * 305.46888 * 9 7 2 25 25 H 1.09008 * 112.84804 * 50.33424 * 12 10 9 26 26 H 1.09001 * 113.61153 * 334.56321 * 13 12 10 27 27 H 1.08991 * 113.61434 * 105.46818 * 13 12 10 28 28 H 1.09004 * 113.53872 * 270.80846 * 14 13 12 29 29 H 1.08999 * 113.74517 * 139.94344 * 14 13 12 30 30 H 1.08996 * 113.61532 * 254.53137 * 15 12 10 31 31 H 1.08999 * 113.61444 * 25.43596 * 15 12 10 32 32 H 1.08994 * 111.10373 * 87.90796 * 18 16 10 33 33 H 1.09002 * 110.99986 * 324.00089 * 18 16 10 34 34 H 1.09004 * 110.37146 * 278.17968 * 19 18 16 35 35 H 1.08999 * 110.37987 * 155.95227 * 19 18 16 36 36 H 1.00901 * 111.00598 * 213.58526 * 20 19 18 37 37 H 1.09000 * 109.88744 * 120.39587 * 21 20 19 38 38 H 1.09000 * 109.88583 * 241.41754 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2397 -3.6588 0.1361 11 1 3.0028 -3.5789 -0.6380 12 6 2.9030 -3.6038 1.5138 13 6 4.0628 -2.5975 1.5993 14 6 4.8052 -3.6476 2.4459 15 6 3.9468 -4.7103 1.7395 16 6 1.4937 -4.9857 -0.0180 17 1 0.8363 -5.1608 0.8335 18 6 2.4952 -6.1621 -0.1895 19 6 1.6376 -7.1867 -0.9731 20 7 0.8211 -6.3713 -1.8974 21 6 0.6955 -5.0126 -1.3384 22 1 -0.4850 0.8400 0.0004 23 1 0.6995 -2.6003 -0.9353 24 1 0.5533 -2.5159 0.8367 25 1 2.1830 -3.5103 2.3268 26 1 4.5376 -2.3959 0.6391 27 1 3.8135 -1.6896 2.1484 28 1 4.6061 -3.5651 3.5144 29 1 5.8684 -3.7230 2.2181 30 1 3.6041 -5.5053 2.4017 31 1 4.3899 -5.0872 0.8178 32 1 2.7976 -6.5642 0.7773 33 1 3.3639 -5.8538 -0.7714 34 1 0.9957 -7.7446 -0.2913 35 1 2.2780 -7.8682 -1.5332 36 1 -0.0863 -6.7881 -2.0421 37 1 1.1088 -4.2848 -2.0366 38 1 -0.3532 -4.7868 -1.1452 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260643105.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:43 Heat of formation + Delta-G solvation = -0.069819 kcal Electronic energy + Delta-G solvation = -16144.671069 eV Core-core repulsion = 13793.554886 eV Total energy + Delta-G solvation = -2351.116183 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.32334 -37.29205 -33.57228 -31.78650 -29.45773 -27.75410 -25.65788 -24.78196 -23.25542 -21.18527 -20.69913 -19.01105 -18.64443 -16.48816 -16.13887 -15.04972 -14.77030 -14.33872 -14.13857 -13.06326 -12.85612 -12.43724 -12.19422 -12.09197 -11.84078 -11.53362 -11.46017 -11.07828 -10.92827 -10.81077 -10.76463 -10.59614 -10.30395 -10.05723 -9.78543 -9.58130 -9.27895 -8.84269 -8.70494 -8.27125 -8.12308 -5.93381 -3.92812 3.33395 3.41623 3.44848 4.50701 4.57423 5.08504 5.12016 5.19204 5.29271 5.34250 5.44753 5.50923 5.56636 5.70653 5.85863 5.99399 6.09357 6.10080 6.18602 6.27138 6.28153 6.36061 6.40505 6.49438 6.60586 6.70284 6.84369 6.90619 6.98905 7.15765 7.22395 7.29094 7.62109 7.77275 7.89478 8.07505 8.52062 9.13904 9.69944 11.18295 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.025121 B = 0.009440 C = 0.007226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.344799 B = 2965.320498 C = 3873.798370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.883 3.117 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.508 4.508 8 H 0.063 0.937 9 C 0.026 3.974 10 C -0.060 4.060 11 H 0.058 0.942 12 C -0.081 4.081 13 C -0.114 4.114 14 C -0.154 4.154 15 C -0.142 4.142 16 C -0.098 4.098 17 H 0.065 0.935 18 C -0.125 4.125 19 C 0.042 3.958 20 N -0.689 5.689 21 C 0.052 3.948 22 H 0.257 0.743 23 H 0.015 0.985 24 H 0.016 0.984 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.035 0.965 35 H 0.069 0.931 36 H 0.331 0.669 37 H 0.082 0.918 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.755 -11.235 1.874 12.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.712 3.288 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.213 1.213 7 C -0.546 4.546 8 H 0.081 0.919 9 C -0.011 4.011 10 C -0.079 4.079 11 H 0.077 0.923 12 C -0.099 4.099 13 C -0.152 4.152 14 C -0.192 4.192 15 C -0.180 4.180 16 C -0.117 4.117 17 H 0.083 0.917 18 C -0.163 4.163 19 C -0.087 4.087 20 N -0.318 5.318 21 C -0.076 4.076 22 H 0.067 0.933 23 H 0.033 0.967 24 H 0.034 0.966 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.053 0.947 35 H 0.088 0.912 36 H 0.146 0.854 37 H 0.100 0.900 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.138 -10.960 1.416 12.187 hybrid contribution -0.348 0.891 0.797 1.245 sum 4.789 -10.068 2.213 11.367 Atomic orbital electron populations 1.69975 1.05983 1.26149 1.51730 1.25001 0.94731 0.98996 0.95825 0.86668 0.80263 0.84452 0.77442 1.19738 1.21229 1.21252 1.21419 0.93396 0.90732 1.49091 0.91930 1.19189 0.93704 0.91232 0.96980 1.21196 0.98027 0.93469 0.95222 0.92329 1.22299 0.95007 0.94608 0.97998 1.22824 0.96138 0.96865 0.99327 1.22983 0.98296 0.98779 0.99114 1.23155 0.98460 0.96490 0.99849 1.22444 0.96464 0.96009 0.96787 0.91665 1.23005 0.98325 0.95450 0.99472 1.22847 0.96115 0.96022 0.93718 1.61936 1.19362 1.03371 1.47117 1.22716 0.99242 0.89987 0.95700 0.93324 0.96667 0.96557 0.90427 0.90518 0.91519 0.91207 0.92648 0.92824 0.90375 0.91031 0.90942 0.94708 0.91239 0.85440 0.89975 0.93303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 2 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 3 Si 0.88 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.51 -13.72 8.11 -34.44 -0.28 -14.00 16 8 H 0.06 1.63 5.47 -52.49 -0.29 1.35 16 9 C 0.03 0.64 4.24 -27.88 -0.12 0.52 16 10 C -0.06 -1.18 1.26 -90.62 -0.11 -1.30 16 11 H 0.06 1.20 7.82 -51.93 -0.41 0.80 16 12 C -0.08 -1.46 3.00 -89.81 -0.27 -1.73 16 13 C -0.11 -2.08 5.47 -25.82 -0.14 -2.22 16 14 C -0.15 -2.29 8.09 -25.82 -0.21 -2.50 16 15 C -0.14 -2.10 5.41 -25.92 -0.14 -2.24 16 16 C -0.10 -1.65 2.48 -88.63 -0.22 -1.87 16 17 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 18 C -0.12 -1.77 4.60 -24.43 -0.11 -1.88 16 19 C 0.04 0.56 7.56 -2.30 -0.02 0.54 16 20 N -0.69 -10.22 7.39 -110.79 -0.82 -11.04 16 21 C 0.05 0.89 6.00 -2.83 -0.02 0.88 16 22 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 23 H 0.02 0.40 6.49 -51.93 -0.34 0.06 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.08 1.49 8.14 -51.92 -0.42 1.06 16 26 H 0.08 1.45 7.26 -51.93 -0.38 1.07 16 27 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.73 7.70 -51.93 -0.40 0.33 16 31 H 0.08 1.12 6.41 -51.93 -0.33 0.79 16 32 H 0.07 0.92 6.50 -51.93 -0.34 0.59 16 33 H 0.07 1.07 7.28 -51.93 -0.38 0.69 16 34 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.33 4.26 8.91 -39.29 -0.35 3.91 16 37 H 0.08 1.59 7.16 -51.93 -0.37 1.22 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 285.80 15.07 4.31 4.31 Total: -1.00 -28.63 285.80 -9.05 -37.68 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -6.52 Total: 2.86 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: -1.74 Total: -24.36 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: -0.08 Total: -37.07 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.63 -9.05 -37.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260643105.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.613 kcal (2) G-P(sol) polarization free energy of solvation -28.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds