Wall clock time and date at job start Mon Mar 30 2020 02:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 119.99936 * 2 1 4 4 H 1.48493 * 109.47037 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46910 * 300.00001 * 3 2 1 6 6 H 1.48497 * 109.47158 * 60.00150 * 3 2 1 7 7 C 1.37876 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99666 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00221 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47256 * 185.46251 * 9 7 2 11 11 H 1.09001 * 109.47220 * 306.17840 * 10 9 7 12 12 C 1.52999 * 109.46958 * 66.17671 * 10 9 7 13 13 C 1.53784 * 113.61709 * 279.13838 * 12 10 9 14 14 C 1.53958 * 87.01820 * 220.04781 * 13 12 10 15 15 C 1.53781 * 113.61575 * 181.52581 * 12 10 9 16 16 C 1.53000 * 109.47075 * 186.17329 * 10 9 7 17 17 H 1.08994 * 110.77240 * 291.04003 * 16 10 9 18 18 C 1.55439 * 110.69079 * 167.86441 * 16 10 9 19 19 C 1.54904 * 101.52004 * 205.97946 * 18 16 10 20 20 N 1.47846 * 104.89813 * 37.06348 * 19 18 16 21 21 C 1.47447 * 108.56334 * 335.85277 * 20 19 18 22 22 H 0.96992 * 119.99959 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.46960 * 65.46302 * 9 7 2 24 24 H 1.08998 * 109.47317 * 305.46888 * 9 7 2 25 25 H 1.09008 * 112.84804 * 50.33424 * 12 10 9 26 26 H 1.09001 * 113.61153 * 334.56321 * 13 12 10 27 27 H 1.08991 * 113.61434 * 105.46818 * 13 12 10 28 28 H 1.09004 * 113.53872 * 270.80846 * 14 13 12 29 29 H 1.08999 * 113.74517 * 139.94344 * 14 13 12 30 30 H 1.08996 * 113.61532 * 254.53137 * 15 12 10 31 31 H 1.08999 * 113.61444 * 25.43596 * 15 12 10 32 32 H 1.08994 * 111.10373 * 87.90796 * 18 16 10 33 33 H 1.09002 * 110.99986 * 324.00089 * 18 16 10 34 34 H 1.09004 * 110.37146 * 278.17968 * 19 18 16 35 35 H 1.08999 * 110.37987 * 155.95227 * 19 18 16 36 36 H 1.00901 * 111.00598 * 213.58526 * 20 19 18 37 37 H 1.09000 * 109.88744 * 120.39587 * 21 20 19 38 38 H 1.09000 * 109.88583 * 241.41754 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2397 -3.6588 0.1361 11 1 3.0028 -3.5789 -0.6380 12 6 2.9030 -3.6038 1.5138 13 6 4.0628 -2.5975 1.5993 14 6 4.8052 -3.6476 2.4459 15 6 3.9468 -4.7103 1.7395 16 6 1.4937 -4.9857 -0.0180 17 1 0.8363 -5.1608 0.8335 18 6 2.4952 -6.1621 -0.1895 19 6 1.6376 -7.1867 -0.9731 20 7 0.8211 -6.3713 -1.8974 21 6 0.6955 -5.0126 -1.3384 22 1 -0.4850 0.8400 0.0004 23 1 0.6995 -2.6003 -0.9353 24 1 0.5533 -2.5159 0.8367 25 1 2.1830 -3.5103 2.3268 26 1 4.5376 -2.3959 0.6391 27 1 3.8135 -1.6896 2.1484 28 1 4.6061 -3.5651 3.5144 29 1 5.8684 -3.7230 2.2181 30 1 3.6041 -5.5053 2.4017 31 1 4.3899 -5.0872 0.8178 32 1 2.7976 -6.5642 0.7773 33 1 3.3639 -5.8538 -0.7714 34 1 0.9957 -7.7446 -0.2913 35 1 2.2780 -7.8682 -1.5332 36 1 -0.0863 -6.7881 -2.0421 37 1 1.1088 -4.2848 -2.0366 38 1 -0.3532 -4.7868 -1.1452 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260643105.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:42 Heat of formation + Delta-G solvation = -17.608198 kcal Electronic energy + Delta-G solvation = -16145.431590 eV Core-core repulsion = 13793.554886 eV Total energy + Delta-G solvation = -2351.876704 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.71563 -38.56106 -35.46299 -33.56835 -30.83645 -29.29440 -27.26254 -26.15319 -25.00726 -22.68562 -21.95334 -20.57106 -19.98102 -18.32095 -17.64044 -16.60737 -16.31606 -16.00149 -15.46462 -14.45611 -14.42084 -14.04249 -13.65783 -13.55900 -13.22491 -13.13373 -13.03776 -12.75499 -12.65356 -12.28357 -12.17714 -12.09533 -12.02134 -11.52605 -11.26777 -11.14587 -10.90903 -10.57796 -10.52976 -10.27439 -9.32980 -8.12445 -6.18071 1.37489 1.39056 1.50590 2.43562 3.21327 3.39865 3.77354 3.84973 3.91892 3.99190 4.07212 4.23153 4.32107 4.46313 4.61277 4.64196 4.80248 4.87032 4.95504 4.98731 5.02901 5.05500 5.15352 5.15758 5.23399 5.24506 5.35219 5.41906 5.48100 5.57058 5.67197 5.82925 5.85996 5.96056 6.00355 6.38407 6.52819 6.98579 7.48695 8.99937 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.025121 B = 0.009440 C = 0.007226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.344799 B = 2965.320498 C = 3873.798370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.004 4.004 3 Si 0.949 3.051 4 H -0.261 1.261 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.514 4.514 8 H 0.070 0.930 9 C 0.033 3.967 10 C -0.048 4.048 11 H 0.049 0.951 12 C -0.091 4.091 13 C -0.127 4.127 14 C -0.138 4.138 15 C -0.123 4.123 16 C -0.096 4.096 17 H 0.063 0.937 18 C -0.115 4.115 19 C 0.043 3.957 20 N -0.694 5.694 21 C 0.056 3.944 22 H 0.258 0.742 23 H -0.011 1.011 24 H -0.016 1.016 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.041 0.959 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.087 0.913 36 H 0.343 0.657 37 H 0.052 0.948 38 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.709 -12.964 2.485 14.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.200 4.200 3 Si 0.775 3.225 4 H -0.184 1.184 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.552 4.552 8 H 0.088 0.912 9 C -0.004 4.004 10 C -0.067 4.067 11 H 0.067 0.933 12 C -0.110 4.110 13 C -0.165 4.165 14 C -0.175 4.175 15 C -0.160 4.160 16 C -0.116 4.116 17 H 0.081 0.919 18 C -0.153 4.153 19 C -0.085 4.085 20 N -0.324 5.324 21 C -0.073 4.073 22 H 0.066 0.934 23 H 0.008 0.992 24 H 0.002 0.998 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.060 0.940 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.159 0.841 37 H 0.070 0.930 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 7.105 -12.708 2.025 14.700 hybrid contribution -1.009 1.434 0.576 1.845 sum 6.097 -11.274 2.601 13.078 Atomic orbital electron populations 1.70114 1.07641 1.26987 1.53274 1.25865 0.95550 1.02797 0.95812 0.85631 0.79489 0.80039 0.77371 1.18443 1.20979 1.20910 1.21837 0.93923 0.91709 1.47717 0.91213 1.19064 0.93992 0.93136 0.94193 1.20972 0.96599 0.92922 0.96188 0.93259 1.22307 0.95310 0.97179 0.96177 1.22842 0.97271 0.96893 0.99477 1.22908 0.99149 0.96399 0.99086 1.23051 0.96261 0.95994 1.00694 1.22358 0.97088 0.95773 0.96371 0.91882 1.22965 0.97402 0.94100 1.00825 1.22945 0.96129 0.95671 0.93804 1.61875 1.20520 1.02448 1.47525 1.22501 0.98382 0.91075 0.95319 0.93365 0.99224 0.99768 0.91971 0.91523 0.93961 0.90149 0.90635 0.90557 0.89348 0.88791 0.91261 0.92916 0.89428 0.84085 0.92991 0.94440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.95 13.29 21.45 0.28 -57.67 16 2 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 3 Si 0.95 45.11 29.54 68.60 2.03 47.14 16 4 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 6 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 7 C -0.51 -28.63 8.11 25.60 0.21 -28.42 16 8 H 0.07 3.71 5.47 -2.91 -0.02 3.70 16 9 C 0.03 1.72 4.24 29.85 0.13 1.85 16 10 C -0.05 -1.91 1.26 -10.80 -0.01 -1.92 16 11 H 0.05 2.04 7.82 -2.39 -0.02 2.03 16 12 C -0.09 -3.25 3.00 -10.27 -0.03 -3.28 16 13 C -0.13 -4.55 5.47 31.18 0.17 -4.38 16 14 C -0.14 -3.68 8.09 31.18 0.25 -3.43 16 15 C -0.12 -3.22 5.41 31.12 0.17 -3.05 16 16 C -0.10 -3.21 2.48 -9.51 -0.02 -3.24 16 17 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 18 C -0.12 -2.94 4.60 32.08 0.15 -2.79 16 19 C 0.04 1.00 7.56 86.77 0.66 1.65 16 20 N -0.69 -19.60 7.39 -504.42 -3.73 -23.33 16 21 C 0.06 1.97 6.00 86.65 0.52 2.49 16 22 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 23 H -0.01 -0.59 6.49 -2.38 -0.02 -0.61 16 24 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 25 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 26 H 0.07 2.49 7.26 -2.39 -0.02 2.47 16 27 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 29 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.08 1.71 7.70 -2.39 -0.02 1.69 16 31 H 0.09 2.18 6.41 -2.39 -0.02 2.17 16 32 H 0.09 2.00 6.50 -2.39 -0.02 1.99 16 33 H 0.07 1.84 7.28 -2.39 -0.02 1.82 16 34 H 0.05 1.06 8.14 -2.38 -0.02 1.05 16 35 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.34 8.31 8.91 -89.69 -0.80 7.51 16 37 H 0.05 2.11 7.16 -2.39 -0.02 2.09 16 38 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -63.57 285.80 1.45 -62.12 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 0.23 Total: 16.03 kcal Atomic # 6 Polarization: -46.94 SS G_CDS: 2.64 Total: -44.29 kcal Atomic # 7 Polarization: -77.55 SS G_CDS: -3.44 Total: -80.99 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -63.57 1.45 -62.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260643105.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.515 kcal (2) G-P(sol) polarization free energy of solvation -63.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds