Wall clock time and date at job start Mon Mar 30 2020 02:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00278 * 2 1 4 4 H 1.48505 * 109.46706 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47040 * 299.99290 * 3 2 1 6 6 H 1.48495 * 109.47383 * 59.99690 * 3 2 1 7 7 C 1.37876 * 119.99545 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00004 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00133 * 0.28061 * 7 2 1 10 10 C 1.53007 * 109.47306 * 174.66227 * 9 7 2 11 11 H 1.08997 * 109.46778 * 184.69703 * 10 9 7 12 12 C 1.52995 * 109.46868 * 64.69752 * 10 9 7 13 13 C 1.53779 * 113.61501 * 157.49712 * 12 10 9 14 14 C 1.53780 * 87.08378 * 220.02024 * 13 12 10 15 15 C 1.53781 * 87.08143 * 25.43126 * 14 13 12 16 16 C 1.52994 * 109.46933 * 304.70039 * 10 9 7 17 17 H 1.08996 * 110.29274 * 63.96068 * 16 10 9 18 18 C 1.54261 * 110.32277 * 186.08382 * 16 10 9 19 19 C 1.54385 * 105.05949 * 118.89447 * 18 16 10 20 20 N 1.48563 * 104.59391 * 23.85655 * 19 18 16 21 21 C 1.48558 * 104.22151 * 320.51466 * 20 19 18 22 22 H 0.97000 * 119.99750 * 0.02562 * 1 2 3 23 23 H 1.08992 * 109.47425 * 294.66444 * 9 7 2 24 24 H 1.09003 * 109.46898 * 54.66435 * 9 7 2 25 25 H 1.09002 * 112.85244 * 288.80332 * 12 10 9 26 26 H 1.09005 * 113.61648 * 334.56792 * 13 12 10 27 27 H 1.09000 * 113.61518 * 105.47172 * 13 12 10 28 28 H 1.09001 * 113.61584 * 270.88458 * 14 13 12 29 29 H 1.09000 * 113.69292 * 139.99486 * 14 13 12 30 30 H 1.08994 * 113.61667 * 220.02108 * 15 14 13 31 31 H 1.09004 * 113.61329 * 89.11776 * 15 14 13 32 32 H 1.09000 * 110.32756 * 237.78684 * 18 16 10 33 33 H 1.09001 * 110.32622 * 0.02562 * 18 16 10 34 34 H 1.09001 * 110.41132 * 142.63427 * 19 18 16 35 35 H 1.09000 * 110.41233 * 265.07686 * 19 18 16 36 36 H 1.00899 * 111.00011 * 80.07095 * 20 19 18 37 37 H 1.09004 * 110.40973 * 280.71074 * 21 20 19 38 38 H 1.08990 * 110.41238 * 158.26325 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4991 -0.0053 10 6 2.2402 -3.6588 -0.1376 11 1 1.6913 -4.5963 -0.2257 12 6 3.1374 -3.7075 1.1007 13 6 3.7691 -5.0872 1.3499 14 6 3.5013 -4.8524 2.8459 15 6 2.3640 -3.9116 2.4142 16 6 3.1027 -3.4536 -1.3845 17 1 3.7105 -2.5549 -1.2799 18 6 4.0022 -4.6840 -1.6222 19 6 3.5800 -5.2287 -3.0037 20 7 2.9839 -4.0598 -3.7007 21 6 2.2127 -3.3582 -2.6424 22 1 -0.4850 0.8401 -0.0004 23 1 0.6939 -2.6013 0.9260 24 1 0.5580 -2.5149 -0.8466 25 1 3.8522 -2.8854 1.1382 26 1 3.1956 -5.9127 0.9280 27 1 4.8285 -5.1343 1.0982 28 1 4.3165 -4.3443 3.3609 29 1 3.1560 -5.7413 3.3738 30 1 2.2892 -3.0097 3.0215 31 1 1.4064 -4.4156 2.2832 32 1 5.0514 -4.3890 -1.6362 33 1 3.8289 -5.4344 -0.8508 34 1 4.4494 -5.5943 -3.5501 35 1 2.8404 -6.0213 -2.8901 36 1 3.7014 -3.4617 -4.0819 37 1 1.2592 -3.8582 -2.4721 38 1 2.0527 -2.3156 -2.9167 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260643108.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:45 Heat of formation + Delta-G solvation = -0.418817 kcal Electronic energy + Delta-G solvation = -16274.528370 eV Core-core repulsion = 13923.397054 eV Total energy + Delta-G solvation = -2351.131316 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.36017 -37.34029 -33.66426 -31.62499 -29.08170 -27.36341 -25.66016 -24.96986 -23.26897 -21.45866 -20.79190 -18.94302 -18.57777 -16.17494 -15.98264 -15.12483 -14.55002 -14.36473 -13.86375 -13.45284 -12.94056 -12.53368 -12.20804 -11.97903 -11.78852 -11.56057 -11.23033 -11.04629 -10.84550 -10.68814 -10.63586 -10.52079 -10.22747 -10.01476 -9.93381 -9.78017 -9.14523 -8.88414 -8.72148 -8.32534 -8.18233 -5.95604 -3.95547 3.30912 3.39523 3.41673 4.48378 4.74164 5.10786 5.22210 5.23678 5.31564 5.38998 5.45062 5.54462 5.58493 5.83070 5.99092 6.01438 6.15791 6.18437 6.22834 6.27238 6.30398 6.33989 6.51131 6.53398 6.67358 6.68739 6.80504 6.89485 7.00677 7.14025 7.24509 7.29823 7.72464 7.75272 7.87253 8.04906 8.49701 9.10545 9.67290 11.15763 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.019728 B = 0.011299 C = 0.008195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.943131 B = 2477.405252 C = 3415.954237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.882 3.118 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.502 4.502 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.059 4.059 11 H 0.041 0.959 12 C -0.081 4.081 13 C -0.142 4.142 14 C -0.148 4.148 15 C -0.128 4.128 16 C -0.098 4.098 17 H 0.078 0.922 18 C -0.163 4.163 19 C 0.039 3.961 20 N -0.678 5.678 21 C 0.053 3.947 22 H 0.258 0.742 23 H 0.014 0.986 24 H 0.020 0.980 25 H 0.086 0.914 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.330 0.670 37 H 0.074 0.926 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.239 -9.134 -0.399 11.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.710 3.290 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.541 4.541 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.078 4.078 11 H 0.060 0.940 12 C -0.100 4.100 13 C -0.179 4.179 14 C -0.185 4.185 15 C -0.165 4.165 16 C -0.118 4.118 17 H 0.096 0.904 18 C -0.202 4.202 19 C -0.091 4.091 20 N -0.304 5.304 21 C -0.076 4.076 22 H 0.067 0.933 23 H 0.032 0.968 24 H 0.038 0.962 25 H 0.104 0.896 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.144 0.856 37 H 0.092 0.908 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.512 -9.367 -0.772 11.434 hybrid contribution 1.177 1.497 0.687 2.024 sum 7.689 -7.869 -0.086 11.003 Atomic orbital electron populations 1.69968 1.05923 1.26167 1.51459 1.24989 0.94712 0.98895 0.95818 0.86699 0.80146 0.84626 0.77497 1.19938 1.21192 1.21240 1.21213 0.92729 0.90747 1.49373 0.92731 1.19157 0.93530 0.91404 0.97084 1.21150 0.95895 0.98935 0.91783 0.94033 1.22373 0.97543 0.95283 0.94753 1.23088 0.99952 0.98915 0.95934 1.22864 0.99549 0.99591 0.96516 1.22793 0.96923 0.98914 0.97871 1.22360 0.96467 0.96743 0.96214 0.90404 1.23203 0.99278 0.99375 0.98318 1.22971 0.98056 0.94986 0.93080 1.63377 1.26034 1.09650 1.31313 1.22999 0.97069 0.98964 0.88609 0.93265 0.96768 0.96172 0.89609 0.90823 0.92593 0.90994 0.92559 0.91706 0.90796 0.92842 0.90618 0.92061 0.91047 0.85619 0.90773 0.90394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.34 13.29 55.43 0.74 -25.60 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 3 Si 0.88 21.36 29.54 -169.99 -5.02 16.33 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.50 -13.24 7.82 -34.44 -0.27 -13.51 16 8 H 0.05 1.42 5.91 -52.48 -0.31 1.11 16 9 C 0.03 0.61 4.29 -27.88 -0.12 0.49 16 10 C -0.06 -1.14 1.33 -90.62 -0.12 -1.26 16 11 H 0.04 0.79 7.94 -51.93 -0.41 0.37 16 12 C -0.08 -1.45 2.53 -89.81 -0.23 -1.67 16 13 C -0.14 -2.07 5.41 -25.92 -0.14 -2.21 16 14 C -0.15 -2.11 8.08 -25.92 -0.21 -2.32 16 15 C -0.13 -2.20 6.59 -25.92 -0.17 -2.37 16 16 C -0.10 -1.76 2.19 -89.24 -0.20 -1.96 16 17 H 0.08 1.56 6.65 -51.93 -0.35 1.22 16 18 C -0.16 -2.42 6.05 -25.35 -0.15 -2.57 16 19 C 0.04 0.55 7.47 -2.18 -0.02 0.53 16 20 N -0.68 -10.72 7.62 -109.65 -0.84 -11.56 16 21 C 0.05 0.97 5.98 -2.18 -0.01 0.95 16 22 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 23 H 0.01 0.37 7.29 -51.93 -0.38 -0.01 16 24 H 0.02 0.53 7.16 -51.93 -0.37 0.16 16 25 H 0.09 1.67 7.42 -51.93 -0.39 1.29 16 26 H 0.07 1.04 7.30 -51.93 -0.38 0.66 16 27 H 0.06 0.77 8.11 -51.93 -0.42 0.35 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.07 1.28 8.10 -51.93 -0.42 0.86 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.09 4.89 -51.93 -0.25 0.83 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.33 4.77 8.92 -39.29 -0.35 4.42 16 37 H 0.07 1.44 7.52 -51.93 -0.39 1.05 16 38 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 LS Contribution 287.47 15.07 4.33 4.33 Total: -1.00 -27.85 287.47 -9.03 -36.89 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -6.51 Total: 4.03 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: -1.73 Total: -24.43 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: -0.10 Total: -37.16 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -27.85 -9.03 -36.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260643108.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.468 kcal (2) G-P(sol) polarization free energy of solvation -27.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds