Wall clock time and date at job start Mon Mar 30 2020 02:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00278 * 2 1 4 4 H 1.48505 * 109.46706 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47040 * 299.99290 * 3 2 1 6 6 H 1.48495 * 109.47383 * 59.99690 * 3 2 1 7 7 C 1.37876 * 119.99545 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00004 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00133 * 0.28061 * 7 2 1 10 10 C 1.53007 * 109.47306 * 174.66227 * 9 7 2 11 11 H 1.08997 * 109.46778 * 184.69703 * 10 9 7 12 12 C 1.52995 * 109.46868 * 64.69752 * 10 9 7 13 13 C 1.53779 * 113.61501 * 157.49712 * 12 10 9 14 14 C 1.53780 * 87.08378 * 220.02024 * 13 12 10 15 15 C 1.53781 * 87.08143 * 25.43126 * 14 13 12 16 16 C 1.52994 * 109.46933 * 304.70039 * 10 9 7 17 17 H 1.08996 * 110.29274 * 63.96068 * 16 10 9 18 18 C 1.54261 * 110.32277 * 186.08382 * 16 10 9 19 19 C 1.54385 * 105.05949 * 118.89447 * 18 16 10 20 20 N 1.48563 * 104.59391 * 23.85655 * 19 18 16 21 21 C 1.48558 * 104.22151 * 320.51466 * 20 19 18 22 22 H 0.97000 * 119.99750 * 0.02562 * 1 2 3 23 23 H 1.08992 * 109.47425 * 294.66444 * 9 7 2 24 24 H 1.09003 * 109.46898 * 54.66435 * 9 7 2 25 25 H 1.09002 * 112.85244 * 288.80332 * 12 10 9 26 26 H 1.09005 * 113.61648 * 334.56792 * 13 12 10 27 27 H 1.09000 * 113.61518 * 105.47172 * 13 12 10 28 28 H 1.09001 * 113.61584 * 270.88458 * 14 13 12 29 29 H 1.09000 * 113.69292 * 139.99486 * 14 13 12 30 30 H 1.08994 * 113.61667 * 220.02108 * 15 14 13 31 31 H 1.09004 * 113.61329 * 89.11776 * 15 14 13 32 32 H 1.09000 * 110.32756 * 237.78684 * 18 16 10 33 33 H 1.09001 * 110.32622 * 0.02562 * 18 16 10 34 34 H 1.09001 * 110.41132 * 142.63427 * 19 18 16 35 35 H 1.09000 * 110.41233 * 265.07686 * 19 18 16 36 36 H 1.00899 * 111.00011 * 80.07095 * 20 19 18 37 37 H 1.09004 * 110.40973 * 280.71074 * 21 20 19 38 38 H 1.08990 * 110.41238 * 158.26325 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4991 -0.0053 10 6 2.2402 -3.6588 -0.1376 11 1 1.6913 -4.5963 -0.2257 12 6 3.1374 -3.7075 1.1007 13 6 3.7691 -5.0872 1.3499 14 6 3.5013 -4.8524 2.8459 15 6 2.3640 -3.9116 2.4142 16 6 3.1027 -3.4536 -1.3845 17 1 3.7105 -2.5549 -1.2799 18 6 4.0022 -4.6840 -1.6222 19 6 3.5800 -5.2287 -3.0037 20 7 2.9839 -4.0598 -3.7007 21 6 2.2127 -3.3582 -2.6424 22 1 -0.4850 0.8401 -0.0004 23 1 0.6939 -2.6013 0.9260 24 1 0.5580 -2.5149 -0.8466 25 1 3.8522 -2.8854 1.1382 26 1 3.1956 -5.9127 0.9280 27 1 4.8285 -5.1343 1.0982 28 1 4.3165 -4.3443 3.3609 29 1 3.1560 -5.7413 3.3738 30 1 2.2892 -3.0097 3.0215 31 1 1.4064 -4.4156 2.2832 32 1 5.0514 -4.3890 -1.6362 33 1 3.8289 -5.4344 -0.8508 34 1 4.4494 -5.5943 -3.5501 35 1 2.8404 -6.0213 -2.8901 36 1 3.7014 -3.4617 -4.0819 37 1 1.2592 -3.8582 -2.4721 38 1 2.0527 -2.3156 -2.9167 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260643108.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:45 Heat of formation + Delta-G solvation = -17.205370 kcal Electronic energy + Delta-G solvation = -16275.256290 eV Core-core repulsion = 13923.397054 eV Total energy + Delta-G solvation = -2351.859236 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.77402 -38.64118 -35.52777 -33.44795 -30.48880 -28.92950 -27.30927 -26.30747 -25.01067 -22.85118 -22.20291 -20.56786 -19.90275 -18.09116 -17.39768 -16.54178 -16.41325 -15.86198 -15.26955 -14.73961 -14.38326 -14.25744 -13.99667 -13.40606 -13.24188 -12.97485 -12.86527 -12.77749 -12.36671 -12.32603 -12.22693 -12.14771 -11.78426 -11.59014 -11.29115 -11.19032 -10.72341 -10.60875 -10.48041 -10.38615 -9.51575 -8.11897 -6.17232 1.36583 1.38609 1.48887 2.42952 3.22319 3.46183 3.81962 3.89136 3.94005 4.08348 4.12029 4.23657 4.31717 4.51182 4.69772 4.71879 4.84207 4.88892 4.94037 4.97649 5.05606 5.08032 5.15406 5.19651 5.21014 5.22152 5.34499 5.43716 5.53513 5.63333 5.64390 5.74607 5.82700 5.91116 5.99512 6.39317 6.52317 6.98405 7.49221 9.00380 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.019728 B = 0.011299 C = 0.008195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.943131 B = 2477.405252 C = 3415.954237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.946 3.054 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.498 4.498 8 H 0.058 0.942 9 C 0.033 3.967 10 C -0.049 4.049 11 H 0.048 0.952 12 C -0.090 4.090 13 C -0.124 4.124 14 C -0.132 4.132 15 C -0.140 4.140 16 C -0.095 4.095 17 H 0.055 0.945 18 C -0.151 4.151 19 C 0.041 3.959 20 N -0.679 5.679 21 C 0.058 3.942 22 H 0.257 0.743 23 H -0.014 1.014 24 H -0.011 1.011 25 H 0.067 0.933 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.042 0.958 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.339 0.661 37 H 0.058 0.942 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.692 -10.676 -0.453 14.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.198 4.198 3 Si 0.772 3.228 4 H -0.187 1.187 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.536 4.536 8 H 0.076 0.924 9 C -0.004 4.004 10 C -0.068 4.068 11 H 0.066 0.934 12 C -0.109 4.109 13 C -0.161 4.161 14 C -0.169 4.169 15 C -0.177 4.177 16 C -0.115 4.115 17 H 0.073 0.927 18 C -0.190 4.190 19 C -0.088 4.088 20 N -0.306 5.306 21 C -0.072 4.072 22 H 0.066 0.934 23 H 0.004 0.996 24 H 0.008 0.992 25 H 0.086 0.914 26 H 0.103 0.897 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.154 0.846 37 H 0.076 0.924 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.990 -10.918 -0.830 14.167 hybrid contribution 0.357 1.976 0.690 2.123 sum 9.347 -8.942 -0.140 12.936 Atomic orbital electron populations 1.70105 1.07557 1.26930 1.53174 1.25809 0.95481 1.02569 0.95926 0.85677 0.79369 0.80388 0.77325 1.18695 1.20991 1.21103 1.21501 0.92931 0.91525 1.47688 0.92372 1.19015 0.93899 0.93277 0.94225 1.20998 0.95366 0.96704 0.93756 0.93390 1.22347 0.97351 0.97291 0.93879 1.22986 1.00867 0.96404 0.95851 1.22801 0.98003 0.99342 0.96771 1.22842 0.98007 0.99071 0.97800 1.22250 0.96402 0.97750 0.95090 0.92656 1.23106 0.99074 0.97628 0.99189 1.23062 0.99127 0.94020 0.92635 1.63324 1.26672 1.10095 1.30473 1.22774 0.97115 0.97397 0.89927 0.93368 0.99569 0.99250 0.91449 0.89686 0.90692 0.90053 0.90448 0.93949 0.91410 0.91392 0.89475 0.89105 0.90827 0.84598 0.92375 0.93228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.10 13.29 21.45 0.28 -56.82 16 2 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 3 Si 0.95 44.60 29.54 68.60 2.03 46.62 16 4 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 7 C -0.50 -27.06 7.82 25.60 0.20 -26.86 16 8 H 0.06 3.07 5.91 -2.91 -0.02 3.05 16 9 C 0.03 1.67 4.29 29.85 0.13 1.80 16 10 C -0.05 -1.93 1.33 -10.80 -0.01 -1.94 16 11 H 0.05 1.80 7.94 -2.39 -0.02 1.78 16 12 C -0.09 -3.14 2.53 -10.27 -0.03 -3.17 16 13 C -0.12 -3.20 5.41 31.12 0.17 -3.03 16 14 C -0.13 -3.39 8.08 31.12 0.25 -3.14 16 15 C -0.14 -4.77 6.59 31.12 0.21 -4.57 16 16 C -0.09 -3.37 2.19 -9.90 -0.02 -3.39 16 17 H 0.05 2.21 6.65 -2.39 -0.02 2.20 16 18 C -0.15 -4.02 6.05 31.49 0.19 -3.83 16 19 C 0.04 1.02 7.47 86.45 0.65 1.66 16 20 N -0.68 -20.45 7.62 -500.84 -3.82 -24.27 16 21 C 0.06 2.15 5.98 86.45 0.52 2.66 16 22 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 23 H -0.01 -0.79 7.29 -2.39 -0.02 -0.80 16 24 H -0.01 -0.62 7.16 -2.39 -0.02 -0.63 16 25 H 0.07 2.60 7.42 -2.39 -0.02 2.58 16 26 H 0.08 2.05 7.30 -2.38 -0.02 2.03 16 27 H 0.07 1.71 8.11 -2.39 -0.02 1.69 16 28 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.07 2.37 8.10 -2.38 -0.02 2.35 16 32 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.09 2.15 4.89 -2.39 -0.01 2.13 16 34 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.34 9.22 8.92 -89.69 -0.80 8.42 16 37 H 0.06 2.33 7.52 -2.38 -0.02 2.31 16 38 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -61.74 287.47 1.42 -60.32 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.22 Total: 17.55 kcal Atomic # 6 Polarization: -46.11 SS G_CDS: 2.71 Total: -43.40 kcal Atomic # 7 Polarization: -77.56 SS G_CDS: -3.53 Total: -81.09 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -61.74 1.42 -60.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260643108.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.111 kcal (2) G-P(sol) polarization free energy of solvation -61.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds