Wall clock time and date at job start Mon Mar 30 2020 02:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99852 * 2 1 4 4 H 1.48497 * 109.47589 * 270.00330 * 3 2 1 5 5 H 1.48499 * 109.46835 * 30.00686 * 3 2 1 6 6 H 1.48504 * 109.46516 * 150.00314 * 3 2 1 7 7 C 1.37871 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.08010 * 120.00190 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00069 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47429 * 174.98504 * 9 7 2 11 11 H 1.09003 * 109.47095 * 184.82917 * 10 9 7 12 12 C 1.52994 * 109.47220 * 64.82427 * 10 9 7 13 13 C 1.53783 * 113.61450 * 157.49705 * 12 10 9 14 14 C 1.53781 * 87.07980 * 220.02015 * 13 12 10 15 15 C 1.53772 * 87.08351 * 25.43373 * 14 13 12 16 16 C 1.53006 * 109.46900 * 304.82580 * 10 9 7 17 17 H 1.09002 * 110.27001 * 63.95000 * 16 10 9 18 18 C 1.54590 * 110.30902 * 301.75153 * 16 10 9 19 19 C 1.54940 * 102.92420 * 219.12428 * 18 16 10 20 20 N 1.48537 * 103.22298 * 37.41477 * 19 18 16 21 21 C 1.47903 * 105.82023 * 320.79379 * 20 19 18 22 22 H 0.97001 * 119.99819 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47076 * 294.98630 * 9 7 2 24 24 H 1.09000 * 109.47048 * 54.98200 * 9 7 2 25 25 H 1.09000 * 112.85156 * 288.80836 * 12 10 9 26 26 H 1.08990 * 113.61405 * 334.57232 * 13 12 10 27 27 H 1.08999 * 113.61219 * 105.47157 * 13 12 10 28 28 H 1.09000 * 113.61893 * 270.87959 * 14 13 12 29 29 H 1.09008 * 113.60879 * 139.98198 * 14 13 12 30 30 H 1.08996 * 113.61514 * 220.01563 * 15 14 13 31 31 H 1.09009 * 113.69245 * 89.12288 * 15 14 13 32 32 H 1.09001 * 110.72933 * 337.48458 * 18 16 10 33 33 H 1.09008 * 110.72104 * 100.76981 * 18 16 10 34 34 H 1.08997 * 110.66870 * 278.98786 * 19 18 16 35 35 H 1.09001 * 110.81304 * 155.91561 * 19 18 16 36 36 H 1.00901 * 110.99596 * 81.30645 * 20 19 18 37 37 H 1.08997 * 109.91887 * 265.97334 * 21 20 19 38 38 H 1.09002 * 109.91588 * 144.67897 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0216 -2.6311 0.1245 11 1 5.1082 -2.6247 0.2103 12 6 3.6126 -3.4276 -1.1161 13 6 4.4913 -4.6635 -1.3719 14 6 4.4186 -4.3083 -2.8664 15 6 4.1732 -2.8548 -2.4285 16 6 3.4154 -3.2803 1.3703 17 1 2.3329 -3.3568 1.2675 18 6 3.7805 -2.4650 2.6319 19 6 4.0532 -3.5650 3.6884 20 7 4.7275 -4.6305 2.9034 21 6 4.0301 -4.6734 1.5998 22 1 -0.4850 0.8401 0.0004 23 1 3.8745 -0.7598 -0.9326 24 1 3.8752 -0.6046 0.8405 25 1 2.5432 -3.6355 -1.1521 26 1 5.4936 -4.5811 -0.9518 27 1 4.0030 -5.6056 -1.1227 28 1 3.5699 -4.7584 -3.3814 29 1 5.3607 -4.4518 -3.3956 30 1 3.4282 -2.3367 -3.0323 31 1 5.0880 -2.2766 -2.2970 32 1 4.6748 -1.8662 2.4588 33 1 2.9460 -1.8342 2.9384 34 1 3.1183 -3.9323 4.1116 35 1 4.7099 -3.1925 4.4747 36 1 5.7079 -4.4249 2.7824 37 1 3.2432 -5.4272 1.6243 38 1 4.7412 -4.9009 0.8056 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260643113.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:49 Heat of formation + Delta-G solvation = -14.850290 kcal Electronic energy + Delta-G solvation = -16306.678101 eV Core-core repulsion = 13954.920989 eV Total energy + Delta-G solvation = -2351.757112 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.82490 -38.62679 -35.53502 -33.62626 -30.08817 -29.97598 -27.33122 -26.23548 -24.80932 -22.59538 -22.32913 -20.55783 -19.92211 -18.59455 -17.24638 -16.41549 -16.32513 -15.98176 -15.60999 -14.82640 -14.71227 -14.29239 -14.08712 -13.28753 -13.27081 -13.04999 -12.89790 -12.71713 -12.42345 -12.33866 -12.14816 -12.05816 -11.78159 -11.65491 -11.37621 -11.21678 -10.83235 -10.72970 -10.58571 -10.42944 -9.47160 -8.21508 -6.20157 1.32549 1.34342 1.44377 2.37813 3.14026 3.44824 3.75778 3.87042 3.89597 4.07975 4.10213 4.16440 4.37034 4.54101 4.56395 4.66542 4.76577 4.84075 4.93551 4.95402 4.96912 5.08680 5.10917 5.12744 5.16124 5.19014 5.31012 5.34481 5.42657 5.55894 5.61257 5.67012 5.73231 5.84030 5.93620 6.41652 6.57719 6.86581 7.41839 8.95061 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.020212 B = 0.011679 C = 0.008380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.958917 B = 2396.879086 C = 3340.393380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C 0.001 3.999 3 Si 0.935 3.065 4 H -0.273 1.273 5 H -0.291 1.291 6 H -0.248 1.248 7 C -0.487 4.487 8 H 0.038 0.962 9 C -0.009 4.009 10 C -0.046 4.046 11 H 0.066 0.934 12 C -0.096 4.096 13 C -0.126 4.126 14 C -0.133 4.133 15 C -0.138 4.138 16 C -0.096 4.096 17 H 0.043 0.957 18 C -0.143 4.143 19 C 0.047 3.953 20 N -0.675 5.675 21 C 0.046 3.954 22 H 0.260 0.740 23 H 0.011 0.989 24 H 0.014 0.986 25 H 0.055 0.945 26 H 0.093 0.907 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.041 0.959 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.046 0.954 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.343 0.657 37 H 0.059 0.941 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.087 -7.684 0.839 15.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.194 4.194 3 Si 0.760 3.240 4 H -0.199 1.199 5 H -0.217 1.217 6 H -0.172 1.172 7 C -0.526 4.526 8 H 0.056 0.944 9 C -0.046 4.046 10 C -0.064 4.064 11 H 0.084 0.916 12 C -0.114 4.114 13 C -0.163 4.163 14 C -0.170 4.170 15 C -0.176 4.176 16 C -0.116 4.116 17 H 0.062 0.938 18 C -0.182 4.182 19 C -0.083 4.083 20 N -0.302 5.302 21 C -0.084 4.084 22 H 0.069 0.931 23 H 0.029 0.971 24 H 0.032 0.968 25 H 0.074 0.926 26 H 0.111 0.889 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.060 0.940 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.159 0.841 37 H 0.078 0.922 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 12.630 -8.183 1.160 15.094 hybrid contribution -0.519 2.114 -0.562 2.248 sum 12.111 -6.069 0.598 13.559 Atomic orbital electron populations 1.70073 1.08070 1.27391 1.54371 1.25875 0.95366 1.02805 0.95382 0.85879 0.79664 0.79682 0.78726 1.19871 1.21715 1.17213 1.21321 0.91540 0.92477 1.47240 0.94364 1.19615 0.94519 0.94868 0.95646 1.20946 0.97495 0.94488 0.93484 0.91597 1.22356 0.98245 0.96484 0.94323 1.23016 1.00027 0.97208 0.96081 1.22777 1.02097 0.95463 0.96660 1.22880 1.00393 0.97060 0.97260 1.22187 0.99451 0.95205 0.94723 0.93842 1.23008 1.00840 0.98475 0.95924 1.23074 0.99680 0.89608 0.95911 1.62759 1.07119 1.46089 1.14265 1.22940 0.98639 0.95304 0.91505 0.93116 0.97080 0.96809 0.92625 0.88858 0.91244 0.90710 0.89976 0.94035 0.90034 0.91539 0.93475 0.91417 0.89071 0.84081 0.92244 0.89124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.49 13.96 21.45 0.30 -60.19 16 2 C 0.00 0.06 5.47 84.65 0.46 0.52 16 3 Si 0.94 44.96 27.57 68.60 1.89 46.85 16 4 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 5 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.25 -11.09 6.40 99.48 0.64 -10.45 16 7 C -0.49 -27.09 8.37 25.60 0.21 -26.87 16 8 H 0.04 2.36 6.15 -2.91 -0.02 2.34 16 9 C -0.01 -0.42 3.38 29.85 0.10 -0.32 16 10 C -0.05 -1.65 1.34 -10.79 -0.01 -1.67 16 11 H 0.07 2.09 7.94 -2.39 -0.02 2.07 16 12 C -0.10 -3.29 2.53 -10.27 -0.03 -3.32 16 13 C -0.13 -3.19 5.39 31.12 0.17 -3.03 16 14 C -0.13 -3.32 8.08 31.12 0.25 -3.07 16 15 C -0.14 -4.42 6.59 31.12 0.21 -4.22 16 16 C -0.10 -3.43 2.13 -9.92 -0.02 -3.45 16 17 H 0.04 1.93 6.64 -2.39 -0.02 1.92 16 18 C -0.14 -4.86 5.60 31.80 0.18 -4.68 16 19 C 0.05 1.28 7.55 86.65 0.65 1.93 16 20 N -0.68 -17.50 7.51 -502.19 -3.77 -21.27 16 21 C 0.05 1.31 6.64 86.45 0.57 1.88 16 22 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 23 H 0.01 0.50 6.96 -2.39 -0.02 0.48 16 24 H 0.01 0.63 5.83 -2.39 -0.01 0.61 16 25 H 0.06 2.32 7.43 -2.39 -0.02 2.30 16 26 H 0.09 2.04 7.31 -2.39 -0.02 2.02 16 27 H 0.07 1.66 8.09 -2.39 -0.02 1.64 16 28 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 30 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.08 2.43 8.10 -2.38 -0.02 2.41 16 32 H 0.07 2.14 7.46 -2.39 -0.02 2.12 16 33 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 34 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.34 7.44 8.92 -89.69 -0.80 6.64 16 37 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.09 2.26 4.73 -2.39 -0.01 2.25 16 Total: -1.00 -63.82 283.58 1.32 -62.50 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.16 Total: 18.40 kcal Atomic # 6 Polarization: -49.04 SS G_CDS: 2.75 Total: -46.29 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: -3.47 Total: -81.46 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.89 Total: 46.85 kcal Total: -63.82 1.32 -62.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260643113.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.649 kcal (2) G-P(sol) polarization free energy of solvation -63.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds