Wall clock time and date at job start Mon Mar 30 2020 02:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46901 * 110.99788 * 2 1 4 4 C 1.46901 * 110.99790 * 123.95054 * 2 1 3 5 5 C 1.53000 * 109.46769 * 169.99915 * 4 2 1 6 6 C 1.50703 * 109.46912 * 180.02562 * 5 4 2 7 7 C 1.36216 * 126.40342 * 84.69241 * 6 5 4 8 8 N 1.32757 * 108.61792 * 179.82971 * 7 6 5 9 9 C 1.32984 * 109.22567 * 0.43803 * 8 7 6 10 10 C 1.39996 * 125.96372 * 179.72678 * 9 8 7 11 11 H 1.07998 * 120.00178 * 179.97438 * 10 9 8 12 12 C 1.40238 * 119.99716 * 0.02562 * 10 9 8 13 13 N 1.30687 * 120.00312 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99543 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47075 * 60.00110 * 14 12 10 16 16 H 1.48508 * 109.47102 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47386 * 299.99531 * 14 12 10 18 18 N 1.36414 * 126.40234 * 265.00061 * 6 5 4 19 19 C 1.46511 * 126.55593 * 0.02562 * 18 6 5 20 20 H 1.08998 * 109.47089 * 296.04801 * 1 2 3 21 21 H 1.09001 * 109.46977 * 56.04954 * 1 2 3 22 22 H 1.08998 * 109.46995 * 176.04706 * 1 2 3 23 23 H 1.08999 * 109.46894 * 183.95297 * 3 2 1 24 24 H 1.09005 * 109.47342 * 303.95215 * 3 2 1 25 25 H 1.09001 * 109.47121 * 63.95310 * 3 2 1 26 26 H 1.09001 * 109.46874 * 50.00195 * 4 2 1 27 27 H 1.08992 * 109.47407 * 290.00212 * 4 2 1 28 28 H 1.09002 * 109.47398 * 300.00295 * 5 4 2 29 29 H 1.09001 * 109.47194 * 60.00475 * 5 4 2 30 30 H 1.08004 * 125.68977 * 359.97438 * 7 6 5 31 31 H 0.97001 * 119.99959 * 180.02562 * 13 12 10 32 32 H 1.08996 * 109.46776 * 89.99940 * 19 18 6 33 33 H 1.09002 * 109.46604 * 210.00124 * 19 18 6 34 34 H 1.08992 * 109.46909 * 329.99472 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 3.5044 -0.9553 0.9704 6 6 4.0444 -1.7416 2.1371 7 6 4.0638 -3.0982 2.2581 8 7 4.6200 -3.4121 3.4219 9 6 4.9532 -2.2958 4.0632 10 6 5.5582 -2.2210 5.3235 11 1 5.7882 -1.2584 5.7558 12 6 5.8664 -3.3960 6.0241 13 7 5.5885 -4.5608 5.5009 14 14 6.6743 -3.2961 7.7055 15 1 5.7921 -2.5453 8.6347 16 1 6.8936 -4.6675 8.2316 17 1 7.9787 -2.5964 7.5872 18 7 4.5997 -1.2276 3.2721 19 6 4.7839 0.1911 3.5884 20 1 -0.3633 0.4513 0.9233 21 1 -0.3633 0.5739 -0.8525 22 1 -0.3633 -1.0252 -0.0708 23 1 3.0827 1.3432 -0.0708 24 1 1.5898 1.9164 -0.8525 25 1 1.7043 1.8724 0.9233 26 1 1.5089 -1.7406 1.1757 27 1 1.7975 -0.2247 2.0628 28 1 3.7024 -1.4965 0.0452 29 1 3.9909 0.0194 0.9324 30 1 3.6911 -3.8013 1.5278 31 1 5.8014 -5.3736 5.9857 32 1 3.9029 0.5642 4.1105 33 1 5.6611 0.3106 4.2243 34 1 4.9249 0.7536 2.6656 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260690791.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:32 Heat of formation + Delta-G solvation = 57.061299 kcal Electronic energy + Delta-G solvation = -15255.188434 eV Core-core repulsion = 12803.009299 eV Total energy + Delta-G solvation = -2452.179135 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.93554 -37.35504 -33.44520 -32.32925 -31.52686 -27.97435 -27.51944 -25.87348 -25.09064 -23.11038 -20.82663 -19.93590 -18.37637 -16.64521 -15.63575 -15.22948 -15.18589 -14.69179 -14.12832 -13.96227 -13.47051 -12.84557 -12.46616 -12.36064 -11.90499 -11.75599 -11.66338 -11.56043 -11.52774 -11.27870 -10.96257 -10.92088 -10.42205 -10.37558 -10.09539 -9.13676 -8.25854 -7.87526 -7.71299 -6.90870 -6.35675 -4.21420 3.07685 3.17110 3.18398 3.60241 4.03443 4.14081 4.49001 4.74032 5.20042 5.26378 5.43036 5.48446 5.62860 5.66502 5.69584 5.84114 5.88606 5.90157 5.97066 6.05979 6.15094 6.25863 6.38099 6.55631 6.62056 7.14032 7.17277 7.20357 7.36648 7.68984 8.17566 8.27861 8.62926 9.00831 9.37658 10.29260 10.57540 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.053569 B = 0.006154 C = 0.005835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.560586 B = 4548.727566 C = 4797.238908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.550 5.550 3 C 0.023 3.977 4 C 0.062 3.938 5 C -0.010 4.010 6 C -0.150 4.150 7 C -0.003 4.003 8 N -0.516 5.516 9 C 0.376 3.624 10 C -0.464 4.464 11 H 0.076 0.924 12 C 0.083 3.917 13 N -0.743 5.743 14 Si 0.910 3.090 15 H -0.268 1.268 16 H -0.279 1.279 17 H -0.268 1.268 18 N -0.507 5.507 19 C 0.101 3.899 20 H 0.021 0.979 21 H 0.063 0.937 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.062 0.938 25 H 0.021 0.979 26 H 0.075 0.925 27 H 0.028 0.972 28 H 0.071 0.929 29 H 0.048 0.952 30 H 0.132 0.868 31 H 0.272 0.728 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.018 9.036 -5.460 11.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.274 5.274 3 C -0.126 4.126 4 C -0.066 4.066 5 C -0.049 4.049 6 C -0.262 4.262 7 C -0.157 4.157 8 N -0.237 5.237 9 C 0.134 3.866 10 C -0.503 4.503 11 H 0.094 0.906 12 C -0.141 4.141 13 N -0.368 5.368 14 Si 0.734 3.266 15 H -0.193 1.193 16 H -0.204 1.204 17 H -0.193 1.193 18 N -0.198 5.198 19 C -0.044 4.044 20 H 0.040 0.960 21 H 0.082 0.918 22 H 0.086 0.914 23 H 0.089 0.911 24 H 0.081 0.919 25 H 0.040 0.960 26 H 0.094 0.906 27 H 0.046 0.954 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.150 0.850 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.746 7.901 -5.606 10.788 hybrid contribution -0.116 1.379 1.216 1.842 sum -4.862 9.280 -4.390 11.359 Atomic orbital electron populations 1.22353 0.87890 1.02137 0.99931 1.62053 1.07417 1.13612 1.44331 1.22407 1.01216 0.89106 0.99844 1.22282 0.96754 0.97708 0.89856 1.19526 0.92285 0.97912 0.95144 1.20280 1.18362 0.94469 0.93095 1.21938 1.04583 0.91282 0.97897 1.71286 1.22234 1.24593 1.05554 1.20204 0.94920 0.79354 0.92157 1.18055 1.39283 0.93883 0.99083 0.90630 1.25680 0.94773 0.94741 0.98902 1.70006 1.33108 0.97926 1.35755 0.86382 0.80070 0.78065 0.82053 1.19315 1.20360 1.19279 1.45154 1.52620 1.05405 1.16578 1.21384 1.01203 0.81659 1.00147 0.96005 0.91800 0.91374 0.91094 0.91902 0.96002 0.90639 0.95403 0.91059 0.93349 0.85012 0.91716 0.93650 0.90994 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.57 60.07 0.57 0.87 16 2 N -0.55 -7.69 5.02 -251.26 -1.26 -8.95 16 3 C 0.02 0.27 9.32 60.07 0.56 0.83 16 4 C 0.06 1.01 4.94 -3.82 -0.02 0.99 16 5 C -0.01 -0.17 5.47 -27.88 -0.15 -0.32 16 6 C -0.15 -3.45 6.23 -81.28 -0.51 -3.96 16 7 C 0.00 -0.08 11.77 -17.88 -0.21 -0.29 16 8 N -0.52 -15.27 9.40 -12.72 -0.12 -15.39 16 9 C 0.38 10.66 7.43 -155.60 -1.16 9.50 16 10 C -0.46 -12.79 9.00 -38.17 -0.34 -13.13 16 11 H 0.08 1.92 7.16 -52.49 -0.38 1.54 16 12 C 0.08 2.21 5.50 -17.29 -0.10 2.11 16 13 N -0.74 -21.12 11.90 55.56 0.66 -20.46 16 14 Si 0.91 19.38 29.56 -169.99 -5.03 14.35 16 15 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 16 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 17 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 18 N -0.51 -12.25 3.21 -118.76 -0.38 -12.64 16 19 C 0.10 1.90 10.77 59.85 0.64 2.54 16 20 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 21 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 22 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 23 H 0.07 0.86 6.47 -51.93 -0.34 0.53 16 24 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 25 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.08 1.29 8.06 -51.93 -0.42 0.87 16 27 H 0.03 0.49 8.12 -51.93 -0.42 0.06 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.05 0.81 5.49 -51.93 -0.28 0.53 16 30 H 0.13 3.03 8.06 -52.48 -0.42 2.61 16 31 H 0.27 7.04 8.29 -40.82 -0.34 6.70 16 32 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.07 1.31 7.38 -51.93 -0.38 0.93 16 34 H 0.06 0.92 7.10 -51.93 -0.37 0.55 16 LS Contribution 283.49 15.07 4.27 4.27 Total: -1.00 -31.82 283.49 -7.66 -39.48 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -5.10 Total: 0.18 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -0.70 Total: -0.86 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: -1.10 Total: -57.43 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.35 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.82 -7.66 -39.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260690791.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.537 kcal (2) G-P(sol) polarization free energy of solvation -31.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds