Wall clock time and date at job start Mon Mar 30 2020 02:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46901 * 110.99788 * 2 1 4 4 C 1.46901 * 110.99790 * 123.95054 * 2 1 3 5 5 C 1.53000 * 109.46769 * 169.99915 * 4 2 1 6 6 C 1.50703 * 109.46912 * 180.02562 * 5 4 2 7 7 C 1.36216 * 126.40342 * 84.69241 * 6 5 4 8 8 N 1.32757 * 108.61792 * 179.82971 * 7 6 5 9 9 C 1.32984 * 109.22567 * 0.43803 * 8 7 6 10 10 C 1.39996 * 125.96372 * 179.72678 * 9 8 7 11 11 H 1.07998 * 120.00178 * 179.97438 * 10 9 8 12 12 C 1.40238 * 119.99716 * 0.02562 * 10 9 8 13 13 N 1.30687 * 120.00312 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99543 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47075 * 60.00110 * 14 12 10 16 16 H 1.48508 * 109.47102 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47386 * 299.99531 * 14 12 10 18 18 N 1.36414 * 126.40234 * 265.00061 * 6 5 4 19 19 C 1.46511 * 126.55593 * 0.02562 * 18 6 5 20 20 H 1.08998 * 109.47089 * 296.04801 * 1 2 3 21 21 H 1.09001 * 109.46977 * 56.04954 * 1 2 3 22 22 H 1.08998 * 109.46995 * 176.04706 * 1 2 3 23 23 H 1.08999 * 109.46894 * 183.95297 * 3 2 1 24 24 H 1.09005 * 109.47342 * 303.95215 * 3 2 1 25 25 H 1.09001 * 109.47121 * 63.95310 * 3 2 1 26 26 H 1.09001 * 109.46874 * 50.00195 * 4 2 1 27 27 H 1.08992 * 109.47407 * 290.00212 * 4 2 1 28 28 H 1.09002 * 109.47398 * 300.00295 * 5 4 2 29 29 H 1.09001 * 109.47194 * 60.00475 * 5 4 2 30 30 H 1.08004 * 125.68977 * 359.97438 * 7 6 5 31 31 H 0.97001 * 119.99959 * 180.02562 * 13 12 10 32 32 H 1.08996 * 109.46776 * 89.99940 * 19 18 6 33 33 H 1.09002 * 109.46604 * 210.00124 * 19 18 6 34 34 H 1.08992 * 109.46909 * 329.99472 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 3.5044 -0.9553 0.9704 6 6 4.0444 -1.7416 2.1371 7 6 4.0638 -3.0982 2.2581 8 7 4.6200 -3.4121 3.4219 9 6 4.9532 -2.2958 4.0632 10 6 5.5582 -2.2210 5.3235 11 1 5.7882 -1.2584 5.7558 12 6 5.8664 -3.3960 6.0241 13 7 5.5885 -4.5608 5.5009 14 14 6.6743 -3.2961 7.7055 15 1 5.7921 -2.5453 8.6347 16 1 6.8936 -4.6675 8.2316 17 1 7.9787 -2.5964 7.5872 18 7 4.5997 -1.2276 3.2721 19 6 4.7839 0.1911 3.5884 20 1 -0.3633 0.4513 0.9233 21 1 -0.3633 0.5739 -0.8525 22 1 -0.3633 -1.0252 -0.0708 23 1 3.0827 1.3432 -0.0708 24 1 1.5898 1.9164 -0.8525 25 1 1.7043 1.8724 0.9233 26 1 1.5089 -1.7406 1.1757 27 1 1.7975 -0.2247 2.0628 28 1 3.7024 -1.4965 0.0452 29 1 3.9909 0.0194 0.9324 30 1 3.6911 -3.8013 1.5278 31 1 5.8014 -5.3736 5.9857 32 1 3.9029 0.5642 4.1105 33 1 5.6611 0.3106 4.2243 34 1 4.9249 0.7536 2.6656 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260690791.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:31 Heat of formation + Delta-G solvation = 35.722089 kcal Electronic energy + Delta-G solvation = -15256.113772 eV Core-core repulsion = 12803.009299 eV Total energy + Delta-G solvation = -2453.104473 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.85866 -38.50668 -35.37534 -34.18368 -33.07829 -29.80331 -28.47280 -27.56385 -26.72282 -24.66677 -22.09284 -21.90957 -20.16228 -18.58069 -17.39087 -16.68454 -16.37531 -16.07579 -15.74115 -15.41056 -14.97687 -14.36006 -14.20229 -13.50552 -13.47485 -13.30432 -13.25020 -12.88208 -12.84017 -12.65844 -12.48475 -12.38242 -12.28674 -11.88668 -11.75602 -11.04465 -9.82429 -9.73230 -9.34436 -8.89161 -8.31209 -6.25029 1.37474 1.43526 1.57047 1.78539 2.26885 2.66450 2.74827 3.08508 3.64106 4.02701 4.19658 4.23761 4.29392 4.42492 4.50103 4.53362 4.64079 4.66416 4.69200 4.75299 4.77336 4.94565 4.99468 5.03442 5.17814 5.23137 5.45286 5.75573 6.02566 6.11125 6.25193 6.30442 6.70637 7.02476 7.41445 8.30932 8.65095 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.053569 B = 0.006154 C = 0.005835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.560586 B = 4548.727566 C = 4797.238908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.557 5.557 3 C 0.020 3.980 4 C 0.075 3.925 5 C -0.003 4.003 6 C -0.117 4.117 7 C -0.054 4.054 8 N -0.563 5.563 9 C 0.337 3.663 10 C -0.494 4.494 11 H 0.089 0.911 12 C 0.031 3.969 13 N -0.795 5.795 14 Si 0.994 3.006 15 H -0.259 1.259 16 H -0.274 1.274 17 H -0.258 1.258 18 N -0.510 5.510 19 C 0.094 3.906 20 H 0.022 0.978 21 H 0.086 0.914 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.084 0.916 25 H 0.023 0.977 26 H 0.063 0.937 27 H 0.016 0.984 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.144 0.856 31 H 0.275 0.725 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.222 11.358 -5.751 13.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.281 5.281 3 C -0.128 4.128 4 C -0.054 4.054 5 C -0.042 4.042 6 C -0.230 4.230 7 C -0.205 4.205 8 N -0.284 5.284 9 C 0.092 3.908 10 C -0.533 4.533 11 H 0.107 0.893 12 C -0.188 4.188 13 N -0.421 5.421 14 Si 0.814 3.186 15 H -0.183 1.183 16 H -0.199 1.199 17 H -0.182 1.182 18 N -0.199 5.199 19 C -0.049 4.049 20 H 0.040 0.960 21 H 0.105 0.895 22 H 0.085 0.915 23 H 0.089 0.911 24 H 0.103 0.897 25 H 0.041 0.959 26 H 0.081 0.919 27 H 0.034 0.966 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.161 0.839 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.967 10.266 -5.927 12.853 hybrid contribution -0.144 0.766 1.126 1.369 sum -5.112 11.032 -4.801 13.072 Atomic orbital electron populations 1.22430 0.86392 1.02644 1.00948 1.62030 1.08837 1.14669 1.42591 1.22494 1.01272 0.88076 1.00915 1.21972 0.95338 0.97585 0.90488 1.19589 0.93469 0.98095 0.92997 1.20994 1.14564 0.94179 0.93277 1.22298 1.06966 0.93219 0.98021 1.71136 1.23464 1.26594 1.07237 1.20537 0.96591 0.80411 0.93280 1.18506 1.40240 0.94990 0.99562 0.89311 1.26769 0.94860 0.93878 1.03268 1.70163 1.35050 0.98902 1.38009 0.85109 0.79090 0.78294 0.76098 1.18287 1.19861 1.18176 1.45474 1.51352 1.06985 1.16079 1.21700 1.02151 0.78933 1.02134 0.95964 0.89538 0.91454 0.91145 0.89705 0.95884 0.91873 0.96585 0.90228 0.91380 0.83865 0.91493 0.92127 0.90590 0.89342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 9.57 127.69 1.22 1.72 16 2 N -0.56 -14.00 5.02 -948.84 -4.76 -18.77 16 3 C 0.02 0.42 9.32 127.69 1.19 1.61 16 4 C 0.07 2.30 4.94 86.30 0.43 2.73 16 5 C 0.00 -0.09 5.47 29.85 0.16 0.08 16 6 C -0.12 -5.31 6.23 41.38 0.26 -5.05 16 7 C -0.05 -2.83 11.77 84.08 0.99 -1.84 16 8 N -0.56 -34.58 9.40 -194.17 -1.83 -36.41 16 9 C 0.34 19.53 7.43 133.59 0.99 20.52 16 10 C -0.49 -27.69 9.00 23.18 0.21 -27.48 16 11 H 0.09 4.51 7.16 -2.91 -0.02 4.48 16 12 C 0.03 1.68 5.50 85.35 0.47 2.15 16 13 N -0.80 -46.86 11.90 21.88 0.26 -46.60 16 14 Si 0.99 40.09 29.56 68.60 2.03 42.11 16 15 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 16 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 17 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 18 N -0.51 -24.42 3.21 -529.63 -1.70 -26.12 16 19 C 0.09 3.33 10.77 127.77 1.38 4.70 16 20 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 21 H 0.09 1.41 8.12 -2.39 -0.02 1.39 16 22 H 0.07 1.40 8.12 -2.39 -0.02 1.38 16 23 H 0.07 1.45 6.47 -2.39 -0.02 1.43 16 24 H 0.08 1.39 8.12 -2.38 -0.02 1.37 16 25 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.06 2.10 8.06 -2.39 -0.02 2.08 16 27 H 0.02 0.53 8.12 -2.39 -0.02 0.51 16 28 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.07 2.05 5.49 -2.39 -0.01 2.04 16 30 H 0.14 6.84 8.06 -2.91 -0.02 6.82 16 31 H 0.27 14.79 8.29 -92.71 -0.77 14.02 16 32 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.08 2.64 7.38 -2.39 -0.02 2.62 16 34 H 0.09 2.56 7.10 -2.39 -0.02 2.54 16 Total: -1.00 -71.20 283.49 2.37 -68.83 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 1.07 Total: 17.82 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 7.30 Total: -0.87 kcal Atomic # 7 Polarization: -119.86 SS G_CDS: -8.03 Total: -127.89 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.11 kcal Total: -71.20 2.37 -68.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260690791.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.553 kcal (2) G-P(sol) polarization free energy of solvation -71.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds