Wall clock time and date at job start Mon Mar 30 2020 03:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99530 * 2 1 4 4 H 1.48507 * 109.46811 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47400 * 299.99881 * 3 2 1 6 6 H 1.48502 * 109.47190 * 60.00419 * 3 2 1 7 7 C 1.37878 * 120.00293 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99906 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00044 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47300 * 180.02562 * 9 7 2 11 11 H 1.09007 * 109.67268 * 55.31012 * 10 9 7 12 12 C 1.54526 * 109.57208 * 294.99899 * 10 9 7 13 13 C 1.45872 * 111.67035 * 162.95521 * 12 10 9 14 14 C 1.53984 * 112.66910 * 61.50060 * 13 12 10 15 15 N 1.44312 * 108.30860 * 278.59200 * 14 13 12 16 16 C 1.46905 * 110.99756 * 221.34328 * 15 14 13 17 17 C 1.53004 * 117.49670 * 137.22131 * 16 15 14 18 18 C 1.53004 * 117.49519 * 68.56677 * 16 15 14 19 19 C 1.47943 * 113.63984 * 95.40050 * 15 14 13 20 20 C 1.50540 * 109.57583 * 175.62256 * 10 9 7 21 21 H 0.96996 * 120.00679 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47219 * 59.99867 * 9 7 2 23 23 H 1.09001 * 109.46910 * 300.00360 * 9 7 2 24 24 H 1.08993 * 109.04250 * 283.52391 * 12 10 9 25 25 H 1.09000 * 109.03843 * 42.46976 * 12 10 9 26 26 H 1.09000 * 108.84229 * 182.32062 * 13 12 10 27 27 H 1.09006 * 108.84623 * 300.67687 * 13 12 10 28 28 H 1.08992 * 109.69750 * 38.29257 * 14 13 12 29 29 H 1.09003 * 109.69933 * 158.85118 * 14 13 12 30 30 H 1.08996 * 115.55236 * 282.89365 * 16 15 14 31 31 H 1.09008 * 117.49621 * 0.02562 * 17 16 15 32 32 H 1.08996 * 117.49940 * 145.02167 * 17 16 15 33 33 H 1.09000 * 117.49875 * 214.97940 * 18 16 15 34 34 H 1.08998 * 117.50309 * 359.97438 * 18 16 15 35 35 H 1.08999 * 108.71278 * 79.12850 * 19 15 14 36 36 H 1.09006 * 108.70768 * 197.14339 * 19 15 14 37 37 H 1.09006 * 108.78496 * 332.45898 * 20 10 9 38 38 H 1.08998 * 108.78802 * 90.66701 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 1 2.9279 -3.5613 0.8435 12 6 3.0495 -3.6556 -1.3201 13 6 4.2576 -4.4667 -1.2187 14 6 3.9550 -5.9485 -0.9291 15 7 3.7207 -6.0949 0.4873 16 6 4.3605 -7.3124 1.0036 17 6 5.0962 -7.2108 2.3413 18 6 5.8897 -7.3460 1.0393 19 6 2.2896 -6.0494 0.8597 20 6 1.4983 -4.9644 0.1077 21 1 -0.4851 0.8400 -0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6248 -2.5570 0.8897 24 1 2.4229 -4.0494 -2.1203 25 1 3.3302 -2.6301 -1.5605 26 1 4.8084 -4.3967 -2.1567 27 1 4.8809 -4.0714 -0.4165 28 1 3.0679 -6.2571 -1.4820 29 1 4.8053 -6.5622 -1.2267 30 1 3.8415 -8.2454 0.7843 31 1 5.1052 -6.2407 2.8384 32 1 5.0616 -8.0772 3.0018 33 1 6.3768 -8.3013 0.8437 34 1 6.4211 -6.4650 0.6793 35 1 1.8417 -7.0199 0.6464 36 1 2.2128 -5.8594 1.9303 37 1 0.5591 -4.7878 0.6322 38 1 1.2746 -5.3253 -0.8962 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260710065.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:37 Heat of formation + Delta-G solvation = 10.156902 kcal Electronic energy + Delta-G solvation = -15845.614157 eV Core-core repulsion = 13494.941438 eV Total energy + Delta-G solvation = -2350.672719 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.15075 -36.65295 -33.62647 -32.24860 -31.80919 -28.02172 -25.26342 -24.57439 -22.28288 -21.54606 -21.12844 -19.67103 -18.68978 -16.41334 -16.24677 -15.08694 -15.00740 -14.40259 -14.08652 -13.51031 -13.22797 -12.60707 -12.42303 -12.24957 -11.91970 -11.48855 -11.48224 -11.29797 -10.89662 -10.63702 -10.57914 -10.32335 -10.27546 -10.11743 -9.93898 -9.72226 -9.38765 -8.93928 -8.84245 -8.26261 -7.95139 -5.91656 -3.91945 3.35669 3.43223 3.47664 3.81775 3.93191 4.53042 4.94969 4.99941 5.16994 5.26328 5.36472 5.43689 5.54649 5.60019 5.63914 5.70291 5.73541 5.89085 5.97803 6.03527 6.21471 6.24294 6.29511 6.40171 6.49221 6.77610 6.82421 6.91383 7.23789 7.24999 7.36030 7.41973 7.55209 7.79501 7.96570 8.10532 8.55180 9.15246 9.71121 11.19940 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.039925 B = 0.006335 C = 0.006131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.144390 B = 4418.540886 C = 4565.889273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.054 3.946 3 Si 0.887 3.113 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.508 4.508 8 H 0.056 0.944 9 C 0.026 3.974 10 C -0.070 4.070 11 H 0.065 0.935 12 C -0.109 4.109 13 C -0.108 4.108 14 C 0.068 3.932 15 N -0.517 5.517 16 C 0.009 3.991 17 C -0.166 4.166 18 C -0.171 4.171 19 C 0.072 3.928 20 C -0.115 4.115 21 H 0.258 0.742 22 H 0.013 0.987 23 H 0.013 0.987 24 H 0.040 0.960 25 H 0.073 0.927 26 H 0.048 0.952 27 H 0.065 0.935 28 H 0.039 0.961 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.022 0.978 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.220 -14.315 0.441 16.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.715 3.285 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.547 4.547 8 H 0.075 0.925 9 C -0.011 4.011 10 C -0.088 4.088 11 H 0.083 0.917 12 C -0.146 4.146 13 C -0.146 4.146 14 C -0.060 4.060 15 N -0.242 5.242 16 C -0.100 4.100 17 C -0.204 4.204 18 C -0.209 4.209 19 C -0.055 4.055 20 C -0.153 4.153 21 H 0.067 0.933 22 H 0.031 0.969 23 H 0.032 0.968 24 H 0.059 0.941 25 H 0.092 0.908 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.119 0.881 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.117 0.883 35 H 0.040 0.960 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.266 -13.811 0.635 16.108 hybrid contribution -0.059 0.281 -0.391 0.485 sum 8.206 -13.530 0.244 15.826 Atomic orbital electron populations 1.69974 1.06026 1.26235 1.51615 1.25023 0.94779 0.99106 0.95703 0.86612 0.80216 0.84186 0.77454 1.19760 1.21174 1.21159 1.21313 0.93051 0.90969 1.49343 0.92534 1.19209 0.93690 0.91462 0.96782 1.20900 0.97641 0.93546 0.96748 0.91654 1.20558 0.95821 1.00490 0.97756 1.20520 0.99255 0.94355 1.00453 1.21783 0.99542 0.97524 0.87158 1.60461 1.14411 1.34437 1.14903 1.22372 0.93510 0.92459 1.01652 1.23032 1.03553 1.03190 0.90583 1.22996 0.93059 1.02834 1.01988 1.22353 0.85638 0.97115 1.00373 1.21570 0.98699 0.95733 0.99287 0.93253 0.96901 0.96836 0.94076 0.90814 0.93380 0.91626 0.94268 0.92200 0.90358 0.88070 0.89232 0.89155 0.88251 0.95989 0.91384 0.91571 0.93345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 13.29 55.43 0.74 -26.65 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.51 -14.42 8.16 -34.44 -0.28 -14.71 16 8 H 0.06 1.58 7.22 -52.49 -0.38 1.20 16 9 C 0.03 0.66 4.29 -27.89 -0.12 0.55 16 10 C -0.07 -1.46 1.84 -91.05 -0.17 -1.62 16 11 H 0.07 1.45 7.79 -51.92 -0.40 1.04 16 12 C -0.11 -2.09 4.67 -29.30 -0.14 -2.23 16 13 C -0.11 -1.73 5.37 -29.59 -0.16 -1.89 16 14 C 0.07 0.98 5.31 -4.70 -0.02 0.95 16 15 N -0.52 -7.61 4.12 -226.65 -0.93 -8.54 16 16 C 0.01 0.11 4.84 -67.71 -0.33 -0.22 16 17 C -0.17 -1.84 10.46 -26.69 -0.28 -2.12 16 18 C -0.17 -1.83 9.75 -26.69 -0.26 -2.09 16 19 C 0.07 1.10 5.44 -2.78 -0.02 1.09 16 20 C -0.12 -2.04 4.83 -27.49 -0.13 -2.17 16 21 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 22 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.01 0.37 7.98 -51.93 -0.41 -0.04 16 24 H 0.04 0.77 7.59 -51.93 -0.39 0.37 16 25 H 0.07 1.58 6.66 -51.93 -0.35 1.24 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 28 H 0.04 0.58 6.79 -51.93 -0.35 0.22 16 29 H 0.06 0.77 7.14 -51.93 -0.37 0.40 16 30 H 0.08 0.91 8.12 -51.93 -0.42 0.49 16 31 H 0.10 1.25 8.14 -51.92 -0.42 0.83 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.02 0.31 8.00 -51.93 -0.42 -0.11 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.20 7.62 -51.93 -0.40 0.80 16 38 H 0.05 0.83 6.66 -51.93 -0.35 0.48 16 LS Contribution 293.62 15.07 4.42 4.42 Total: -1.00 -29.64 293.62 -9.55 -39.19 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -6.75 Total: -2.40 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: -2.00 Total: -22.99 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: -0.20 Total: -35.19 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.64 -9.55 -39.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260710065.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.345 kcal (2) G-P(sol) polarization free energy of solvation -29.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds