Wall clock time and date at job start Mon Mar 30 2020 03:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99530 * 2 1 4 4 H 1.48507 * 109.46811 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47400 * 299.99881 * 3 2 1 6 6 H 1.48502 * 109.47190 * 60.00419 * 3 2 1 7 7 C 1.37878 * 120.00293 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99906 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00044 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47300 * 180.02562 * 9 7 2 11 11 H 1.09007 * 109.67268 * 55.31012 * 10 9 7 12 12 C 1.54526 * 109.57208 * 294.99899 * 10 9 7 13 13 C 1.45872 * 111.67035 * 162.95521 * 12 10 9 14 14 C 1.53984 * 112.66910 * 61.50060 * 13 12 10 15 15 N 1.44312 * 108.30860 * 278.59200 * 14 13 12 16 16 C 1.46905 * 110.99756 * 221.34328 * 15 14 13 17 17 C 1.53004 * 117.49670 * 137.22131 * 16 15 14 18 18 C 1.53004 * 117.49519 * 68.56677 * 16 15 14 19 19 C 1.47943 * 113.63984 * 95.40050 * 15 14 13 20 20 C 1.50540 * 109.57583 * 175.62256 * 10 9 7 21 21 H 0.96996 * 120.00679 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47219 * 59.99867 * 9 7 2 23 23 H 1.09001 * 109.46910 * 300.00360 * 9 7 2 24 24 H 1.08993 * 109.04250 * 283.52391 * 12 10 9 25 25 H 1.09000 * 109.03843 * 42.46976 * 12 10 9 26 26 H 1.09000 * 108.84229 * 182.32062 * 13 12 10 27 27 H 1.09006 * 108.84623 * 300.67687 * 13 12 10 28 28 H 1.08992 * 109.69750 * 38.29257 * 14 13 12 29 29 H 1.09003 * 109.69933 * 158.85118 * 14 13 12 30 30 H 1.08996 * 115.55236 * 282.89365 * 16 15 14 31 31 H 1.09008 * 117.49621 * 0.02562 * 17 16 15 32 32 H 1.08996 * 117.49940 * 145.02167 * 17 16 15 33 33 H 1.09000 * 117.49875 * 214.97940 * 18 16 15 34 34 H 1.08998 * 117.50309 * 359.97438 * 18 16 15 35 35 H 1.08999 * 108.71278 * 79.12850 * 19 15 14 36 36 H 1.09006 * 108.70768 * 197.14339 * 19 15 14 37 37 H 1.09006 * 108.78496 * 332.45898 * 20 10 9 38 38 H 1.08998 * 108.78802 * 90.66701 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 1 2.9279 -3.5613 0.8435 12 6 3.0495 -3.6556 -1.3201 13 6 4.2576 -4.4667 -1.2187 14 6 3.9550 -5.9485 -0.9291 15 7 3.7207 -6.0949 0.4873 16 6 4.3605 -7.3124 1.0036 17 6 5.0962 -7.2108 2.3413 18 6 5.8897 -7.3460 1.0393 19 6 2.2896 -6.0494 0.8597 20 6 1.4983 -4.9644 0.1077 21 1 -0.4851 0.8400 -0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6248 -2.5570 0.8897 24 1 2.4229 -4.0494 -2.1203 25 1 3.3302 -2.6301 -1.5605 26 1 4.8084 -4.3967 -2.1567 27 1 4.8809 -4.0714 -0.4165 28 1 3.0679 -6.2571 -1.4820 29 1 4.8053 -6.5622 -1.2267 30 1 3.8415 -8.2454 0.7843 31 1 5.1052 -6.2407 2.8384 32 1 5.0616 -8.0772 3.0018 33 1 6.3768 -8.3013 0.8437 34 1 6.4211 -6.4650 0.6793 35 1 1.8417 -7.0199 0.6464 36 1 2.2128 -5.8594 1.9303 37 1 0.5591 -4.7878 0.6322 38 1 1.2746 -5.3253 -0.8962 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260710065.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:37 Heat of formation + Delta-G solvation = -6.464098 kcal Electronic energy + Delta-G solvation = -15846.334898 eV Core-core repulsion = 13494.941438 eV Total energy + Delta-G solvation = -2351.393459 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.38973 -37.89831 -35.34414 -33.83121 -33.37652 -29.87197 -26.55833 -26.38973 -23.56463 -22.94086 -22.19952 -21.01924 -20.20805 -18.43724 -17.46425 -16.56700 -16.35581 -15.96086 -15.42182 -15.01011 -14.59514 -14.38479 -13.81884 -13.62158 -13.45229 -13.18736 -13.07021 -12.66735 -12.35938 -12.27980 -12.20119 -11.84856 -11.62104 -11.48817 -11.22241 -11.20092 -10.94419 -10.81414 -10.71448 -10.49511 -9.05586 -8.16319 -6.24917 1.39143 1.39514 1.52824 2.42634 2.86966 2.95101 3.16647 3.88203 4.07126 4.08634 4.13816 4.18632 4.28690 4.36408 4.37893 4.54486 4.69258 4.78209 4.84835 4.85706 4.90024 4.97781 5.12709 5.18411 5.27011 5.28915 5.32336 5.38771 5.47436 5.52520 5.58842 5.71062 5.87216 5.97585 6.30023 6.33956 6.45097 6.91231 7.42992 8.95956 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.039925 B = 0.006335 C = 0.006131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.144390 B = 4418.540886 C = 4565.889273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.003 4.003 3 Si 0.959 3.041 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.524 4.524 8 H 0.057 0.943 9 C 0.031 3.969 10 C -0.058 4.058 11 H 0.050 0.950 12 C -0.100 4.100 13 C -0.104 4.104 14 C 0.074 3.926 15 N -0.534 5.534 16 C -0.005 4.005 17 C -0.166 4.166 18 C -0.158 4.158 19 C 0.080 3.920 20 C -0.111 4.111 21 H 0.261 0.739 22 H -0.013 1.013 23 H -0.016 1.016 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.039 0.961 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.115 0.885 34 H 0.089 0.911 35 H 0.042 0.958 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.007 -15.601 0.208 18.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.200 4.200 3 Si 0.784 3.216 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.562 4.562 8 H 0.076 0.924 9 C -0.006 4.006 10 C -0.077 4.077 11 H 0.069 0.931 12 C -0.138 4.138 13 C -0.142 4.142 14 C -0.054 4.054 15 N -0.259 5.259 16 C -0.113 4.113 17 C -0.204 4.204 18 C -0.195 4.195 19 C -0.047 4.047 20 C -0.148 4.148 21 H 0.070 0.930 22 H 0.005 0.995 23 H 0.003 0.997 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.087 0.913 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.128 0.872 33 H 0.133 0.867 34 H 0.108 0.892 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.067 -15.111 0.405 18.161 hybrid contribution -0.645 0.685 -0.305 0.989 sum 9.421 -14.426 0.100 17.230 Atomic orbital electron populations 1.70106 1.07740 1.27426 1.52505 1.25943 0.95696 1.03149 0.95191 0.85480 0.79139 0.79234 0.77713 1.18720 1.20397 1.20513 1.21660 0.93278 0.92170 1.49114 0.92437 1.19116 0.94048 0.93371 0.94051 1.20682 0.96441 0.93227 0.97342 0.93102 1.20460 0.97107 0.99633 0.96568 1.20447 0.97329 0.95266 1.01142 1.21716 1.00438 0.96149 0.87085 1.60378 1.13840 1.36438 1.15221 1.22477 0.94479 0.91773 1.02561 1.23066 1.03439 1.03153 0.90755 1.23056 0.91850 1.03661 1.00973 1.22180 0.86231 0.96740 0.99523 1.21448 0.98307 0.94965 1.00115 0.92984 0.99452 0.99727 0.93664 0.93664 0.91279 0.92882 0.94313 0.89914 0.89072 0.89874 0.87206 0.86722 0.89199 0.93957 0.91875 0.92677 0.92581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.49 13.29 21.45 0.28 -58.20 16 2 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 3 Si 0.96 45.57 29.54 68.60 2.03 47.59 16 4 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 7 C -0.52 -30.57 8.16 25.60 0.21 -30.36 16 8 H 0.06 3.27 7.22 -2.91 -0.02 3.25 16 9 C 0.03 1.70 4.29 29.85 0.13 1.83 16 10 C -0.06 -2.49 1.84 -11.07 -0.02 -2.51 16 11 H 0.05 2.31 7.79 -2.38 -0.02 2.29 16 12 C -0.10 -3.86 4.67 28.93 0.13 -3.72 16 13 C -0.10 -3.19 5.37 28.74 0.15 -3.04 16 14 C 0.07 1.95 5.31 87.12 0.46 2.41 16 15 N -0.53 -14.68 4.12 -870.97 -3.59 -18.26 16 16 C 0.00 -0.10 4.84 44.92 0.22 0.12 16 17 C -0.17 -3.30 10.46 30.62 0.32 -2.98 16 18 C -0.16 -2.88 9.75 30.62 0.30 -2.58 16 19 C 0.08 2.35 5.44 86.41 0.47 2.82 16 20 C -0.11 -3.93 4.83 30.10 0.15 -3.78 16 21 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 22 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 23 H -0.02 -0.93 7.98 -2.39 -0.02 -0.95 16 24 H 0.04 1.68 7.59 -2.39 -0.02 1.66 16 25 H 0.04 1.97 6.66 -2.39 -0.02 1.96 16 26 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.05 1.77 8.08 -2.38 -0.02 1.75 16 28 H 0.04 1.04 6.79 -2.39 -0.02 1.02 16 29 H 0.08 1.82 7.14 -2.39 -0.02 1.81 16 30 H 0.09 1.79 8.12 -2.39 -0.02 1.77 16 31 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 32 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.09 1.83 8.14 -2.39 -0.02 1.82 16 35 H 0.04 1.08 8.00 -2.39 -0.02 1.06 16 36 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 37 H 0.05 2.05 7.62 -2.38 -0.02 2.03 16 38 H 0.06 1.89 6.66 -2.39 -0.02 1.87 16 Total: -1.00 -64.77 293.62 2.70 -62.07 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 1.00 Total: 8.32 kcal Atomic # 6 Polarization: -44.50 SS G_CDS: 2.98 Total: -41.52 kcal Atomic # 7 Polarization: -73.16 SS G_CDS: -3.30 Total: -76.47 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.59 kcal Total: -64.77 2.70 -62.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260710065.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.608 kcal (2) G-P(sol) polarization free energy of solvation -64.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds