Wall clock time and date at job start Mon Mar 30 2020 03:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00276 * 2 1 4 4 H 1.48494 * 109.47066 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46824 * 300.00301 * 3 2 1 6 6 H 1.48500 * 109.46970 * 59.99908 * 3 2 1 7 7 C 1.37887 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99914 * 185.53197 * 7 2 1 9 9 C 1.50700 * 119.99821 * 5.53401 * 7 2 1 10 10 C 1.53001 * 110.09628 * 60.95779 * 9 7 2 11 11 N 1.46906 * 109.46775 * 53.47479 * 10 9 7 12 12 C 1.54173 * 110.07071 * 299.44422 * 9 7 2 13 13 C 1.55038 * 106.24286 * 239.92003 * 12 9 7 14 14 H 1.08992 * 111.66821 * 145.73638 * 13 12 9 15 15 C 1.52965 * 107.40226 * 269.25370 * 13 12 9 16 16 C 1.52282 * 110.10149 * 170.26818 * 15 13 12 17 17 C 1.51793 * 110.58936 * 298.67251 * 16 15 13 18 18 C 1.51007 * 113.20211 * 52.51097 * 17 16 15 19 19 C 1.49923 * 115.97429 * 317.27388 * 18 17 16 20 20 H 1.09003 * 108.60876 * 163.36846 * 19 18 17 21 21 C 1.54488 * 112.15009 * 284.01570 * 19 18 17 22 22 H 0.97000 * 120.00434 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.47022 * 173.47041 * 10 9 7 24 24 H 1.08995 * 109.47518 * 293.47605 * 10 9 7 25 25 H 1.00901 * 110.99964 * 61.15214 * 11 10 9 26 26 H 1.00903 * 110.99737 * 185.09433 * 11 10 9 27 27 H 1.08997 * 110.11128 * 359.13106 * 12 9 7 28 28 H 1.09004 * 110.11088 * 120.70494 * 12 9 7 29 29 H 1.09000 * 109.36909 * 290.46231 * 15 13 12 30 30 H 1.08994 * 109.36966 * 50.20994 * 15 13 12 31 31 H 1.09006 * 109.25240 * 58.95764 * 16 15 13 32 32 H 1.08997 * 109.25238 * 178.38247 * 16 15 13 33 33 H 1.08998 * 108.75071 * 173.55144 * 17 16 15 34 34 H 1.09004 * 108.75341 * 291.79113 * 17 16 15 35 35 H 1.09005 * 108.28122 * 195.51609 * 18 17 16 36 36 H 1.08996 * 108.09859 * 78.89371 * 18 17 16 37 37 H 1.08996 * 110.63097 * 45.55911 * 21 19 18 38 38 H 1.08993 * 110.63940 * 282.50743 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0807 -1.1962 0.0907 9 6 1.2562 -2.4962 -0.1247 10 6 0.4975 -2.5409 -1.4526 11 7 1.4268 -2.2674 -2.5570 12 6 0.2732 -2.6569 1.0520 13 6 0.6923 -3.9523 1.7935 14 1 0.5284 -3.8720 2.8680 15 6 -0.0919 -5.1093 1.1720 16 6 0.4433 -6.4395 1.6849 17 6 1.9002 -6.6143 1.2963 18 6 2.7673 -5.4450 1.6976 19 6 2.1875 -4.0839 1.4553 20 1 2.7512 -3.3566 2.0396 21 6 2.2413 -3.6849 -0.0362 22 1 -0.4851 0.8400 0.0004 23 1 0.0557 -3.5285 -1.5856 24 1 -0.2908 -1.7881 -1.4462 25 1 2.1568 -2.9628 -2.5959 26 1 0.9359 -2.2090 -3.4366 27 1 0.3478 -1.8006 1.7223 28 1 -0.7464 -2.7520 0.6783 29 1 -1.1448 -5.0165 1.4381 30 1 0.0112 -5.0745 0.0875 31 1 0.3551 -6.4676 2.7710 32 1 -0.1431 -7.2522 1.2562 33 1 2.2841 -7.5162 1.7731 34 1 1.9622 -6.7368 0.2150 35 1 3.7092 -5.5152 1.1533 36 1 2.9879 -5.5363 2.7611 37 1 1.9066 -4.5088 -0.6665 38 1 3.2475 -3.3714 -0.3140 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260935205.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:35 Heat of formation + Delta-G solvation = -30.755657 kcal Electronic energy + Delta-G solvation = -16705.564235 eV Core-core repulsion = 14353.117414 eV Total energy + Delta-G solvation = -2352.446820 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.36432 -35.46036 -32.18804 -31.78748 -31.10182 -28.02213 -26.12940 -24.41978 -23.28563 -21.50809 -20.58922 -18.48082 -17.55227 -16.04127 -14.98431 -14.60466 -14.51269 -13.98136 -13.71531 -13.26035 -13.12552 -12.88082 -12.16735 -12.05425 -11.58885 -11.34876 -10.92055 -10.85545 -10.73844 -10.68830 -10.43542 -10.17443 -10.00958 -9.51844 -9.37093 -9.26143 -9.20444 -8.78795 -8.64183 -8.07741 -7.31049 -5.77982 -3.76069 3.43268 3.51200 3.55339 4.63501 5.12103 5.20859 5.27734 5.52495 5.65185 5.75655 5.85095 5.91357 5.97667 6.03399 6.09034 6.17808 6.42830 6.45955 6.47898 6.54891 6.56672 6.62777 6.72258 6.83901 6.92783 7.00433 7.09559 7.21659 7.23058 7.45446 7.57088 7.83926 7.98415 8.20064 8.43685 8.60382 8.75955 9.18359 9.84713 11.29497 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.036933 B = 0.009367 C = 0.009106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.945524 B = 2988.341244 C = 3074.140621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.068 3.932 3 Si 0.885 3.115 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.292 1.292 7 C -0.466 4.466 8 H 0.049 0.951 9 C 0.076 3.924 10 C 0.083 3.917 11 N -0.826 5.826 12 C -0.080 4.080 13 C -0.092 4.092 14 H 0.058 0.942 15 C -0.107 4.107 16 C -0.115 4.115 17 C -0.109 4.109 18 C -0.104 4.104 19 C -0.080 4.080 20 H 0.066 0.934 21 C -0.104 4.104 22 H 0.253 0.747 23 H -0.024 1.024 24 H 0.086 0.914 25 H 0.319 0.681 26 H 0.313 0.687 27 H 0.066 0.934 28 H 0.038 0.962 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.044 0.956 37 H 0.036 0.964 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.988 -10.412 1.440 10.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.132 4.132 3 Si 0.714 3.286 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.219 1.219 7 C -0.504 4.504 8 H 0.067 0.933 9 C 0.076 3.924 10 C -0.048 4.048 11 N -0.352 5.352 12 C -0.119 4.119 13 C -0.110 4.110 14 H 0.076 0.924 15 C -0.145 4.145 16 C -0.153 4.153 17 C -0.147 4.147 18 C -0.142 4.142 19 C -0.099 4.099 20 H 0.085 0.915 21 C -0.142 4.142 22 H 0.063 0.937 23 H -0.006 1.006 24 H 0.105 0.895 25 H 0.130 0.870 26 H 0.123 0.877 27 H 0.085 0.915 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.054 0.946 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.004 -9.588 1.831 9.813 hybrid contribution 0.132 0.067 -0.457 0.480 sum 1.137 -9.521 1.375 9.686 Atomic orbital electron populations 1.69920 1.05668 1.25554 1.52242 1.24770 0.94635 0.98357 0.95414 0.86670 0.80220 0.84777 0.76919 1.20214 1.21445 1.21886 1.20883 0.92385 0.89733 1.47393 0.93313 1.18793 0.91145 0.92466 0.90034 1.21961 0.95334 0.95164 0.92303 1.58582 1.15796 1.55303 1.05474 1.22335 0.97767 0.93826 0.97961 1.21956 0.94438 0.96486 0.98149 0.92386 1.21419 0.98446 0.93801 1.00817 1.21116 0.95798 0.97872 1.00476 1.20781 0.95512 0.97582 1.00829 1.20405 0.98539 0.94991 1.00230 1.21051 0.95995 0.94494 0.98333 0.91529 1.22519 1.00098 0.97692 0.93878 0.93720 1.00608 0.89545 0.87021 0.87745 0.91530 0.94311 0.93024 0.91957 0.92826 0.93077 0.93161 0.92930 0.92931 0.93696 0.94569 0.93091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.00 10.47 55.43 0.58 -24.42 16 2 C 0.07 1.86 4.96 -17.82 -0.09 1.77 16 3 Si 0.88 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.47 -12.41 7.28 -34.44 -0.25 -12.66 16 8 H 0.05 1.34 7.53 -52.49 -0.40 0.95 16 9 C 0.08 1.77 0.37 -154.19 -0.06 1.72 16 10 C 0.08 1.90 5.16 -3.82 -0.02 1.88 16 11 N -0.83 -17.48 9.00 -10.36 -0.09 -17.57 16 12 C -0.08 -1.83 4.51 -25.04 -0.11 -1.94 16 13 C -0.09 -1.73 3.38 -89.12 -0.30 -2.03 16 14 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 15 C -0.11 -1.78 4.72 -27.12 -0.13 -1.91 16 16 C -0.12 -1.61 5.90 -27.71 -0.16 -1.78 16 17 C -0.11 -1.52 5.77 -28.35 -0.16 -1.68 16 18 C -0.10 -1.59 5.22 -29.26 -0.15 -1.75 16 19 C -0.08 -1.48 2.69 -90.92 -0.24 -1.73 16 20 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 21 C -0.10 -2.11 4.06 -25.09 -0.10 -2.21 16 22 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 23 H -0.02 -0.52 7.55 -51.93 -0.39 -0.91 16 24 H 0.09 2.26 6.60 -51.93 -0.34 1.92 16 25 H 0.32 6.19 8.37 -39.29 -0.33 5.86 16 26 H 0.31 5.86 9.08 -39.29 -0.36 5.50 16 27 H 0.07 1.72 7.03 -51.93 -0.37 1.35 16 28 H 0.04 0.90 7.34 -51.93 -0.38 0.52 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 1.11 6.43 -51.93 -0.33 0.78 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.74 8.13 -51.93 -0.42 0.31 16 35 H 0.05 0.78 8.07 -51.93 -0.42 0.36 16 36 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.04 0.69 6.93 -51.93 -0.36 0.33 16 38 H 0.05 1.07 7.67 -51.93 -0.40 0.67 16 LS Contribution 280.36 15.07 4.23 4.23 Total: -1.00 -27.50 280.36 -8.68 -36.18 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -6.59 Total: 6.92 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: -1.78 Total: -22.31 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: 0.49 Total: -41.99 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -27.50 -8.68 -36.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260935205.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.428 kcal (2) G-P(sol) polarization free energy of solvation -27.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds