Wall clock time and date at job start Mon Mar 30 2020 03:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00276 * 2 1 4 4 H 1.48494 * 109.47066 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46824 * 300.00301 * 3 2 1 6 6 H 1.48500 * 109.46970 * 59.99908 * 3 2 1 7 7 C 1.37887 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99914 * 185.53197 * 7 2 1 9 9 C 1.50700 * 119.99821 * 5.53401 * 7 2 1 10 10 C 1.53001 * 110.09628 * 60.95779 * 9 7 2 11 11 N 1.46906 * 109.46775 * 53.47479 * 10 9 7 12 12 C 1.54173 * 110.07071 * 299.44422 * 9 7 2 13 13 C 1.55038 * 106.24286 * 239.92003 * 12 9 7 14 14 H 1.08992 * 111.66821 * 145.73638 * 13 12 9 15 15 C 1.52965 * 107.40226 * 269.25370 * 13 12 9 16 16 C 1.52282 * 110.10149 * 170.26818 * 15 13 12 17 17 C 1.51793 * 110.58936 * 298.67251 * 16 15 13 18 18 C 1.51007 * 113.20211 * 52.51097 * 17 16 15 19 19 C 1.49923 * 115.97429 * 317.27388 * 18 17 16 20 20 H 1.09003 * 108.60876 * 163.36846 * 19 18 17 21 21 C 1.54488 * 112.15009 * 284.01570 * 19 18 17 22 22 H 0.97000 * 120.00434 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.47022 * 173.47041 * 10 9 7 24 24 H 1.08995 * 109.47518 * 293.47605 * 10 9 7 25 25 H 1.00901 * 110.99964 * 61.15214 * 11 10 9 26 26 H 1.00903 * 110.99737 * 185.09433 * 11 10 9 27 27 H 1.08997 * 110.11128 * 359.13106 * 12 9 7 28 28 H 1.09004 * 110.11088 * 120.70494 * 12 9 7 29 29 H 1.09000 * 109.36909 * 290.46231 * 15 13 12 30 30 H 1.08994 * 109.36966 * 50.20994 * 15 13 12 31 31 H 1.09006 * 109.25240 * 58.95764 * 16 15 13 32 32 H 1.08997 * 109.25238 * 178.38247 * 16 15 13 33 33 H 1.08998 * 108.75071 * 173.55144 * 17 16 15 34 34 H 1.09004 * 108.75341 * 291.79113 * 17 16 15 35 35 H 1.09005 * 108.28122 * 195.51609 * 18 17 16 36 36 H 1.08996 * 108.09859 * 78.89371 * 18 17 16 37 37 H 1.08996 * 110.63097 * 45.55911 * 21 19 18 38 38 H 1.08993 * 110.63940 * 282.50743 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0807 -1.1962 0.0907 9 6 1.2562 -2.4962 -0.1247 10 6 0.4975 -2.5409 -1.4526 11 7 1.4268 -2.2674 -2.5570 12 6 0.2732 -2.6569 1.0520 13 6 0.6923 -3.9523 1.7935 14 1 0.5284 -3.8720 2.8680 15 6 -0.0919 -5.1093 1.1720 16 6 0.4433 -6.4395 1.6849 17 6 1.9002 -6.6143 1.2963 18 6 2.7673 -5.4450 1.6976 19 6 2.1875 -4.0839 1.4553 20 1 2.7512 -3.3566 2.0396 21 6 2.2413 -3.6849 -0.0362 22 1 -0.4851 0.8400 0.0004 23 1 0.0557 -3.5285 -1.5856 24 1 -0.2908 -1.7881 -1.4462 25 1 2.1568 -2.9628 -2.5959 26 1 0.9359 -2.2090 -3.4366 27 1 0.3478 -1.8006 1.7223 28 1 -0.7464 -2.7520 0.6783 29 1 -1.1448 -5.0165 1.4381 30 1 0.0112 -5.0745 0.0875 31 1 0.3551 -6.4676 2.7710 32 1 -0.1431 -7.2522 1.2562 33 1 2.2841 -7.5162 1.7731 34 1 1.9622 -6.7368 0.2150 35 1 3.7092 -5.5152 1.1533 36 1 2.9879 -5.5363 2.7611 37 1 1.9066 -4.5088 -0.6665 38 1 3.2475 -3.3714 -0.3140 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260935205.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:34 Heat of formation + Delta-G solvation = -46.807990 kcal Electronic energy + Delta-G solvation = -16706.260316 eV Core-core repulsion = 14353.117414 eV Total energy + Delta-G solvation = -2353.142902 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.89631 -37.05714 -33.84516 -33.70793 -32.45965 -29.70897 -27.70574 -26.43771 -24.86603 -22.88547 -22.01992 -20.36483 -18.96465 -17.94221 -16.58822 -16.41343 -16.24849 -15.46775 -15.16549 -14.83209 -14.61586 -14.35413 -13.92679 -13.70655 -13.26754 -12.89228 -12.67857 -12.60814 -12.37975 -12.17835 -12.04040 -11.86835 -11.68257 -11.18347 -10.99947 -10.71545 -10.67605 -10.61089 -10.50145 -10.11606 -9.04518 -7.88711 -5.90868 1.41379 1.45619 1.53549 2.56076 3.41667 3.86968 3.92404 4.02907 4.18629 4.39036 4.40469 4.48412 4.62391 4.66988 4.79023 4.85591 4.94389 4.99697 5.08312 5.14532 5.17522 5.23563 5.29804 5.31259 5.37911 5.48159 5.50323 5.62450 5.68320 5.80329 5.85890 5.87604 6.03073 6.24622 6.57578 6.81134 7.02539 7.13086 7.71117 9.16296 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.036933 B = 0.009367 C = 0.009106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.945524 B = 2988.341244 C = 3074.140621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.026 3.974 3 Si 0.931 3.069 4 H -0.275 1.275 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.470 4.470 8 H 0.034 0.966 9 C 0.067 3.933 10 C 0.093 3.907 11 N -0.836 5.836 12 C -0.074 4.074 13 C -0.086 4.086 14 H 0.063 0.937 15 C -0.103 4.103 16 C -0.111 4.111 17 C -0.109 4.109 18 C -0.102 4.102 19 C -0.074 4.074 20 H 0.044 0.956 21 C -0.094 4.094 22 H 0.249 0.751 23 H -0.009 1.009 24 H 0.051 0.949 25 H 0.331 0.669 26 H 0.328 0.672 27 H 0.026 0.974 28 H 0.023 0.977 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.051 0.949 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.655 -12.561 1.597 12.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.171 4.171 3 Si 0.760 3.240 4 H -0.200 1.200 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.508 4.508 8 H 0.052 0.948 9 C 0.066 3.934 10 C -0.038 4.038 11 N -0.364 5.364 12 C -0.112 4.112 13 C -0.104 4.104 14 H 0.081 0.919 15 C -0.141 4.141 16 C -0.148 4.148 17 C -0.146 4.146 18 C -0.139 4.139 19 C -0.093 4.093 20 H 0.062 0.938 21 C -0.131 4.131 22 H 0.058 0.942 23 H 0.009 0.991 24 H 0.069 0.931 25 H 0.144 0.856 26 H 0.139 0.861 27 H 0.045 0.955 28 H 0.042 0.958 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.683 -11.743 1.982 12.028 hybrid contribution -0.077 0.782 -0.518 0.941 sum 1.606 -10.961 1.465 11.175 Atomic orbital electron populations 1.70038 1.06428 1.25599 1.53216 1.25303 0.95272 1.00687 0.95877 0.85935 0.79310 0.82157 0.76588 1.20029 1.21743 1.21755 1.21111 0.91818 0.91409 1.46500 0.94755 1.18859 0.91764 0.92398 0.90380 1.21696 0.94692 0.94657 0.92768 1.58458 1.16097 1.56008 1.05856 1.22154 0.96960 0.94639 0.97491 1.21898 0.95108 0.95300 0.98105 0.91856 1.21342 0.98401 0.94489 0.99832 1.21095 0.96152 0.96472 1.01106 1.20796 0.94998 0.97708 1.01103 1.20358 0.98914 0.93366 1.01301 1.20997 0.95472 0.96328 0.96500 0.93784 1.22369 0.98472 0.96731 0.95565 0.94165 0.99141 0.93086 0.85648 0.86124 0.95526 0.95828 0.92763 0.93212 0.91902 0.90990 0.90478 0.92983 0.92227 0.92441 0.93062 0.94098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.43 10.47 21.45 0.22 -52.21 16 2 C 0.03 1.45 4.96 84.66 0.42 1.87 16 3 Si 0.93 45.79 29.54 68.60 2.03 47.82 16 4 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 5 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 6 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 7 C -0.47 -25.46 7.28 25.60 0.19 -25.27 16 8 H 0.03 1.92 7.53 -2.91 -0.02 1.90 16 9 C 0.07 3.12 0.37 -51.98 -0.02 3.10 16 10 C 0.09 4.27 5.16 86.30 0.45 4.71 16 11 N -0.84 -34.83 9.00 -186.71 -1.68 -36.51 16 12 C -0.07 -3.43 4.51 31.69 0.14 -3.29 16 13 C -0.09 -3.15 3.38 -9.82 -0.03 -3.18 16 14 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 15 C -0.10 -3.21 4.72 30.34 0.14 -3.06 16 16 C -0.11 -2.67 5.90 29.96 0.18 -2.50 16 17 C -0.11 -2.54 5.77 29.55 0.17 -2.37 16 18 C -0.10 -2.80 5.22 28.96 0.15 -2.65 16 19 C -0.07 -2.65 2.69 -10.99 -0.03 -2.68 16 20 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 21 C -0.09 -3.70 4.06 31.65 0.13 -3.57 16 22 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 23 H -0.01 -0.40 7.55 -2.38 -0.02 -0.41 16 24 H 0.05 2.72 6.60 -2.39 -0.02 2.71 16 25 H 0.33 12.41 8.37 -89.69 -0.75 11.66 16 26 H 0.33 11.96 9.08 -89.69 -0.81 11.14 16 27 H 0.03 1.41 7.03 -2.39 -0.02 1.39 16 28 H 0.02 1.12 7.34 -2.39 -0.02 1.10 16 29 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.05 1.67 6.43 -2.39 -0.02 1.65 16 31 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.05 1.24 8.13 -2.38 -0.02 1.22 16 35 H 0.06 1.57 8.07 -2.38 -0.02 1.55 16 36 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.05 1.86 6.93 -2.39 -0.02 1.84 16 38 H 0.04 1.68 7.67 -2.39 -0.02 1.66 16 Total: -1.00 -59.45 280.36 1.92 -57.53 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: -0.53 Total: 22.25 kcal Atomic # 6 Polarization: -40.76 SS G_CDS: 1.88 Total: -38.88 kcal Atomic # 7 Polarization: -87.26 SS G_CDS: -1.46 Total: -88.71 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -59.45 1.92 -57.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260935205.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.718 kcal (2) G-P(sol) polarization free energy of solvation -59.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds