Wall clock time and date at job start Mon Mar 30 2020 03:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00084 * 2 1 4 4 H 1.48501 * 109.47110 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47100 * 299.99920 * 3 2 1 6 6 H 1.48507 * 109.47397 * 59.99999 * 3 2 1 7 7 C 1.37876 * 119.99747 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99535 * 172.70880 * 7 2 1 9 9 C 1.50703 * 120.00329 * 352.71297 * 7 2 1 10 10 C 1.52994 * 110.09742 * 302.42738 * 9 7 2 11 11 N 1.46898 * 109.47734 * 303.92329 * 10 9 7 12 12 C 1.54911 * 110.07515 * 180.90342 * 9 7 2 13 13 C 1.52500 * 105.32290 * 237.31684 * 12 9 7 14 14 H 1.09000 * 109.76410 * 272.21502 * 13 12 9 15 15 C 1.51616 * 116.56618 * 146.67580 * 13 12 9 16 16 C 1.53755 * 107.33357 * 180.27973 * 15 13 12 17 17 C 1.52731 * 111.36313 * 57.45095 * 16 15 13 18 18 C 1.53733 * 111.53774 * 305.26533 * 17 16 15 19 19 C 1.51780 * 107.25226 * 57.81432 * 18 17 16 20 20 H 1.09006 * 110.98364 * 56.07001 * 19 18 17 21 21 C 1.53274 * 115.79280 * 182.95021 * 19 18 17 22 22 H 0.96995 * 119.99987 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.47198 * 63.92594 * 10 9 7 24 24 H 1.09001 * 109.47329 * 183.92169 * 10 9 7 25 25 H 1.00895 * 111.00391 * 174.02186 * 11 10 9 26 26 H 1.00896 * 110.99714 * 297.98016 * 11 10 9 27 27 H 1.08997 * 110.27308 * 118.35155 * 12 9 7 28 28 H 1.09002 * 110.27130 * 356.28146 * 12 9 7 29 29 H 1.09008 * 109.89491 * 299.75814 * 15 13 12 30 30 H 1.08998 * 109.89724 * 60.79500 * 15 13 12 31 31 H 1.09000 * 109.08421 * 178.03666 * 16 15 13 32 32 H 1.09005 * 109.08687 * 297.01916 * 16 15 13 33 33 H 1.09000 * 109.05538 * 184.73283 * 17 16 15 34 34 H 1.09001 * 108.99897 * 65.76301 * 17 16 15 35 35 H 1.08998 * 109.90032 * 298.37785 * 18 17 16 36 36 H 1.09002 * 109.96430 * 177.28758 * 18 17 16 37 37 H 1.09001 * 110.71742 * 38.79095 * 21 19 18 38 38 H 1.09006 * 110.71955 * 275.51550 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0780 -1.1979 -0.1182 9 6 1.2601 -2.4939 0.1667 10 6 0.4692 -2.4830 1.4762 11 7 1.3806 -2.2154 2.5967 12 6 2.2549 -3.6814 0.1561 13 6 1.7904 -4.5860 -0.9805 14 1 1.0456 -5.2903 -0.6101 15 6 2.8711 -5.3334 -1.7370 16 6 2.1754 -6.1653 -2.8269 17 6 1.3440 -5.2822 -3.7551 18 6 0.3360 -4.4285 -2.9687 19 6 1.1281 -3.5964 -1.9767 20 1 1.8868 -3.0011 -2.4847 21 6 0.3004 -2.7157 -1.0341 22 1 -0.4850 0.8400 -0.0004 23 1 -0.2930 -1.7049 1.4339 24 1 -0.0087 -3.4521 1.6201 25 1 0.8700 -2.1065 3.4601 26 1 2.0771 -2.9409 2.6775 27 1 2.2147 -4.2162 1.1050 28 1 3.2670 -3.3245 -0.0346 29 1 3.5611 -4.6246 -2.1951 30 1 3.4125 -5.9912 -1.0571 31 1 2.9311 -6.6889 -3.4124 32 1 1.5222 -6.8983 -2.3533 33 1 0.8026 -5.9153 -4.4581 34 1 2.0117 -4.6237 -4.3106 35 1 -0.3622 -5.0747 -2.4368 36 1 -0.2091 -3.7747 -3.6496 37 1 -0.6030 -3.2354 -0.7148 38 1 0.0530 -1.7671 -1.5105 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260935208.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:39 Heat of formation + Delta-G solvation = -29.302425 kcal Electronic energy + Delta-G solvation = -16540.939067 eV Core-core repulsion = 14188.555264 eV Total energy + Delta-G solvation = -2352.383804 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.22974 -35.66548 -32.14384 -31.87314 -30.84755 -27.90582 -26.10468 -24.52382 -23.20020 -20.79859 -20.31063 -19.20953 -18.14450 -15.85990 -14.87142 -14.54086 -14.29866 -14.02712 -13.79631 -13.32742 -13.23441 -12.57666 -11.97086 -11.91287 -11.72831 -11.39660 -11.11693 -10.99621 -10.75710 -10.57219 -10.34494 -10.16275 -10.04349 -9.56300 -9.50369 -9.30082 -9.03680 -8.83099 -8.71983 -8.06428 -7.31412 -5.78347 -3.77658 3.42927 3.50961 3.55247 4.62485 5.11582 5.15431 5.23401 5.52696 5.68827 5.74453 5.81172 5.94306 5.96134 5.99657 6.06445 6.15396 6.36058 6.42827 6.48457 6.55170 6.60919 6.65512 6.73146 6.79919 6.88786 6.92785 7.09345 7.14631 7.29710 7.46439 7.58948 7.85439 7.96811 8.22184 8.42912 8.60144 8.76173 9.16415 9.83315 11.27357 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.031516 B = 0.009587 C = 0.008724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.235095 B = 2919.983110 C = 3208.919596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.068 3.932 3 Si 0.885 3.115 4 H -0.277 1.277 5 H -0.292 1.292 6 H -0.288 1.288 7 C -0.464 4.464 8 H 0.049 0.951 9 C 0.078 3.922 10 C 0.080 3.920 11 N -0.827 5.827 12 C -0.103 4.103 13 C -0.095 4.095 14 H 0.053 0.947 15 C -0.107 4.107 16 C -0.114 4.114 17 C -0.116 4.116 18 C -0.108 4.108 19 C -0.089 4.089 20 H 0.070 0.930 21 C -0.090 4.090 22 H 0.253 0.747 23 H 0.093 0.907 24 H -0.025 1.025 25 H 0.314 0.686 26 H 0.318 0.682 27 H 0.033 0.967 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.026 0.974 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.420 -9.516 -2.996 10.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.132 4.132 3 Si 0.714 3.286 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.214 1.214 7 C -0.502 4.502 8 H 0.067 0.933 9 C 0.077 3.923 10 C -0.051 4.051 11 N -0.353 5.353 12 C -0.141 4.141 13 C -0.113 4.113 14 H 0.072 0.928 15 C -0.145 4.145 16 C -0.152 4.152 17 C -0.154 4.154 18 C -0.146 4.146 19 C -0.107 4.107 20 H 0.089 0.911 21 C -0.129 4.129 22 H 0.063 0.937 23 H 0.111 0.889 24 H -0.007 1.007 25 H 0.124 0.876 26 H 0.130 0.870 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.045 0.955 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.473 -8.726 -3.410 9.484 hybrid contribution 0.073 -0.002 0.499 0.504 sum 1.546 -8.728 -2.911 9.330 Atomic orbital electron populations 1.69885 1.05695 1.25574 1.52184 1.24773 0.94635 0.98384 0.95362 0.86668 0.80247 0.84719 0.76939 1.20202 1.21870 1.21408 1.20908 0.92630 0.89821 1.46859 0.93286 1.19079 0.90898 0.92219 0.90075 1.21923 0.95414 0.95900 0.91825 1.58583 1.18338 1.52467 1.05938 1.22105 1.00504 0.96631 0.94874 1.21655 0.96869 0.96505 0.96281 0.92810 1.21394 0.97876 0.98433 0.96778 1.21547 0.98493 0.97932 0.97214 1.21555 0.97946 0.98152 0.97705 1.21425 0.97239 0.97775 0.98136 1.21853 0.98358 0.95481 0.95055 0.91144 1.22155 0.95543 0.98457 0.96696 0.93665 0.88898 1.00722 0.87647 0.87037 0.94794 0.92699 0.92054 0.93012 0.93047 0.92837 0.93170 0.92496 0.92690 0.92527 0.95528 0.89892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.82 9.98 55.43 0.55 -24.27 16 2 C 0.07 1.85 4.98 -17.82 -0.09 1.76 16 3 Si 0.88 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 7 C -0.46 -12.37 7.51 -34.44 -0.26 -12.63 16 8 H 0.05 1.35 7.36 -52.49 -0.39 0.96 16 9 C 0.08 1.83 0.42 -153.43 -0.06 1.77 16 10 C 0.08 1.86 5.19 -3.83 -0.02 1.84 16 11 N -0.83 -17.60 9.07 -10.37 -0.09 -17.69 16 12 C -0.10 -2.13 5.41 -25.98 -0.14 -2.27 16 13 C -0.09 -1.71 2.24 -90.38 -0.20 -1.92 16 14 H 0.05 0.97 7.97 -51.93 -0.41 0.56 16 15 C -0.11 -1.66 5.65 -27.04 -0.15 -1.81 16 16 C -0.11 -1.55 5.86 -26.48 -0.16 -1.71 16 17 C -0.12 -1.63 5.85 -26.49 -0.15 -1.78 16 18 C -0.11 -1.76 5.66 -26.97 -0.15 -1.92 16 19 C -0.09 -1.72 2.36 -89.90 -0.21 -1.93 16 20 H 0.07 1.47 8.07 -51.93 -0.42 1.05 16 21 C -0.09 -2.06 5.03 -25.37 -0.13 -2.18 16 22 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 23 H 0.09 2.45 6.34 -51.93 -0.33 2.12 16 24 H -0.03 -0.56 8.14 -51.93 -0.42 -0.98 16 25 H 0.31 5.91 9.08 -39.29 -0.36 5.56 16 26 H 0.32 6.19 7.66 -39.29 -0.30 5.89 16 27 H 0.03 0.66 6.74 -51.93 -0.35 0.31 16 28 H 0.05 1.17 7.35 -51.93 -0.38 0.79 16 29 H 0.06 0.98 8.08 -51.92 -0.42 0.56 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.88 8.02 -51.93 -0.42 0.46 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.03 0.59 7.89 -51.93 -0.41 0.18 16 38 H 0.08 2.15 6.45 -51.93 -0.33 1.82 16 LS Contribution 282.39 15.07 4.26 4.26 Total: -1.00 -27.34 282.39 -8.65 -35.99 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -6.61 Total: 7.60 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: -1.73 Total: -22.77 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: 0.46 Total: -41.96 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -27.34 -8.65 -35.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260935208.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.684 kcal (2) G-P(sol) polarization free energy of solvation -27.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds